Wall clock time and date at job start Tue Mar 31 2020 18:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 110.34996 * 2 1 4 4 C 1.53993 * 110.30690 * 237.86247 * 2 1 3 5 5 N 1.47908 * 107.22336 * 242.20571 * 4 2 1 6 6 C 1.46897 * 111.00072 * 214.25473 * 5 4 2 7 7 C 1.50703 * 109.47306 * 176.61381 * 6 5 4 8 8 O 1.21296 * 119.99416 * 6.14417 * 7 6 5 9 9 N 1.34774 * 120.00292 * 186.13956 * 7 6 5 10 10 C 1.37094 * 119.99583 * 180.02562 * 9 7 6 11 11 H 1.07999 * 120.00525 * 0.02562 * 10 9 7 12 12 C 1.38960 * 119.99524 * 180.02562 * 10 9 7 13 13 N 1.31412 * 119.99916 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 119.99922 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47258 * 59.99878 * 14 12 10 16 16 H 1.48500 * 109.47258 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47123 * 300.00291 * 14 12 10 18 18 C 1.48811 * 105.67826 * 334.90819 * 5 4 2 19 19 C 1.54595 * 110.30780 * 122.14195 * 2 1 3 20 20 H 1.08996 * 110.72097 * 22.52215 * 19 2 1 21 21 C 1.52996 * 110.72379 * 259.40925 * 19 2 1 22 22 N 1.46505 * 109.46847 * 175.00040 * 21 19 2 23 23 C 1.34775 * 120.00226 * 180.02562 * 22 21 19 24 24 O 1.21616 * 119.99438 * 0.02562 * 23 22 21 25 25 C 1.47096 * 120.00149 * 180.02562 * 23 22 21 26 26 C 1.32613 * 124.61580 * 179.70090 * 25 23 22 27 27 C 1.51117 * 110.75618 * 179.84376 * 26 25 23 28 28 C 1.54578 * 104.90261 * 343.80512 * 27 26 25 29 29 C 1.51104 * 124.62404 * 0.02562 * 25 23 22 30 30 H 1.09002 * 109.46796 * 180.68087 * 1 2 3 31 31 H 1.08998 * 109.46925 * 300.68878 * 1 2 3 32 32 H 1.08998 * 109.46913 * 60.68855 * 1 2 3 33 33 H 1.08994 * 109.92289 * 1.65757 * 4 2 1 34 34 H 1.09009 * 109.91688 * 122.76301 * 4 2 1 35 35 H 1.08996 * 109.47542 * 296.62245 * 6 5 4 36 36 H 1.09010 * 109.46875 * 56.61739 * 6 5 4 37 37 H 0.97003 * 119.99922 * 0.02562 * 9 7 6 38 38 H 0.96997 * 119.99530 * 180.02562 * 13 12 10 39 39 H 1.08994 * 110.51834 * 280.53989 * 18 5 4 40 40 H 1.09006 * 110.69606 * 157.49055 * 18 5 4 41 41 H 1.08998 * 109.47207 * 295.00116 * 21 19 2 42 42 H 1.09002 * 109.46866 * 55.00665 * 21 19 2 43 43 H 0.96998 * 119.99776 * 0.02562 * 22 21 19 44 44 H 1.07999 * 124.62602 * 0.02562 * 26 25 23 45 45 H 1.08998 * 110.51771 * 224.85001 * 27 26 25 46 46 H 1.08996 * 110.24753 * 102.61864 * 27 26 25 47 47 H 1.08996 * 110.98401 * 266.71506 * 28 27 26 48 48 H 1.09001 * 111.01786 * 142.92404 * 28 27 26 49 49 H 1.09010 * 110.36501 * 315.44121 * 29 25 23 50 50 H 1.09003 * 110.36697 * 77.64331 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 6 2.0645 -0.7683 -1.2229 5 7 2.8343 -1.9234 -0.7123 6 6 3.9777 -2.2213 -1.5851 7 6 4.7837 -3.3473 -0.9905 8 8 4.3807 -3.9262 -0.0037 9 7 5.9521 -3.7112 -1.5551 10 6 6.6849 -4.7359 -1.0144 11 1 6.3258 -5.2518 -0.1362 12 6 7.8898 -5.1107 -1.5963 13 7 8.3270 -4.4825 -2.6646 14 14 8.8881 -6.5073 -0.8600 15 1 8.0804 -7.7535 -0.8730 16 1 10.1228 -6.7087 -1.6601 17 1 9.2548 -6.1698 0.5389 18 6 3.2856 -1.5347 0.6514 19 6 2.0666 -0.7714 1.2276 20 1 1.3173 -1.4683 1.6029 21 6 2.5012 0.1981 2.3286 22 7 2.8916 -0.5596 3.5202 23 6 3.3124 0.0897 4.6237 24 8 3.3675 1.3046 4.6305 25 6 3.7049 -0.6711 5.8199 26 6 4.1366 -0.1279 6.9501 27 6 4.4480 -1.1959 7.9728 28 6 3.7508 -2.4695 7.4426 29 6 3.6779 -2.1781 5.9261 30 1 -0.3633 -1.0276 0.0122 31 1 -0.3633 0.5245 0.8837 32 1 -0.3633 0.5031 -0.8961 33 1 1.2328 -1.1175 -1.8346 34 1 2.7135 -0.1213 -1.8133 35 1 3.6159 -2.5143 -2.5706 36 1 4.6051 -1.3347 -1.6773 37 1 6.2744 -3.2480 -2.3441 38 1 9.1680 -4.7444 -3.0709 39 1 4.1564 -0.8818 0.5940 40 1 3.5047 -2.4183 1.2511 41 1 3.3484 0.7882 1.9795 42 1 1.6729 0.8622 2.5756 43 1 2.8473 -1.5285 3.5149 44 1 4.2475 0.9332 7.1178 45 1 4.0450 -0.9207 8.9475 46 1 5.5247 -1.3525 8.0388 47 1 2.7530 -2.5743 7.8685 48 1 4.3529 -3.3562 7.6410 49 1 2.7509 -2.5713 5.5085 50 1 4.5373 -2.6100 5.4132 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101869003.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:03 Heat of formation + Delta-G solvation = -86.200682 kcal Electronic energy + Delta-G solvation = -29062.051644 eV Core-core repulsion = 25087.693062 eV Total energy + Delta-G solvation = -3974.358582 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.26706 -40.67726 -39.48286 -38.63531 -36.24155 -35.85443 -34.19397 -33.25358 -31.58598 -30.26303 -29.43560 -28.95595 -26.96989 -26.68569 -24.67866 -23.15546 -22.08219 -21.60325 -21.07736 -20.98568 -19.89426 -19.64525 -18.18269 -17.90358 -17.17946 -16.81582 -16.66888 -16.41386 -16.26569 -16.07993 -15.74304 -15.64257 -15.16710 -14.83554 -14.57883 -14.33998 -14.03242 -13.81892 -13.71515 -13.61311 -13.48610 -13.36745 -12.98934 -12.95384 -12.76872 -12.62413 -12.46147 -12.41450 -12.24626 -12.13155 -12.08783 -12.02642 -11.80221 -11.66786 -11.59193 -11.42043 -11.03587 -10.27616 -10.23841 -10.01283 -9.85710 -9.32660 -8.47001 -5.95677 0.33877 1.39128 1.40975 1.51956 2.04085 2.15310 2.23052 2.28078 2.82573 3.19843 3.27297 3.49145 3.55984 3.61504 3.71214 3.81022 4.05983 4.17920 4.19577 4.24791 4.28904 4.29145 4.33555 4.42098 4.52427 4.59220 4.64371 4.69839 4.71190 4.77128 4.79520 4.86497 4.95134 4.96128 5.06783 5.09920 5.15349 5.18687 5.26999 5.30072 5.33907 5.39851 5.41052 5.47786 5.52586 5.85299 5.95827 6.10457 6.44995 6.59704 7.11563 7.12011 7.55265 8.10454 8.70411 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007675 B = 0.003285 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3647.496918 B = 8522.770627 C =11530.981900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 H 0.088 0.912 4 C 0.035 3.965 5 N -0.510 5.510 6 C 0.047 3.953 7 C 0.441 3.559 8 O -0.611 6.611 9 N -0.575 5.575 10 C -0.332 4.332 11 H 0.081 0.919 12 C -0.014 4.014 13 N -0.922 5.922 14 Si 0.992 3.008 15 H -0.270 1.270 16 H -0.272 1.272 17 H -0.271 1.271 18 C 0.048 3.952 19 C -0.087 4.087 20 H 0.095 0.905 21 C 0.136 3.864 22 N -0.716 5.716 23 C 0.559 3.441 24 O -0.590 6.590 25 C -0.219 4.219 26 C -0.066 4.066 27 C -0.104 4.104 28 C -0.118 4.118 29 C -0.094 4.094 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.110 0.890 36 H 0.062 0.938 37 H 0.395 0.605 38 H 0.277 0.723 39 H 0.025 0.975 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.079 0.921 43 H 0.410 0.590 44 H 0.133 0.867 45 H 0.100 0.900 46 H 0.095 0.905 47 H 0.083 0.917 48 H 0.089 0.911 49 H 0.079 0.921 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.605 9.013 12.790 20.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 H 0.106 0.894 4 C -0.092 4.092 5 N -0.234 5.234 6 C -0.084 4.084 7 C 0.228 3.772 8 O -0.497 6.497 9 N -0.212 5.212 10 C -0.462 4.462 11 H 0.099 0.901 12 C -0.213 4.213 13 N -0.563 5.563 14 Si 0.816 3.184 15 H -0.195 1.195 16 H -0.196 1.196 17 H -0.197 1.197 18 C -0.079 4.079 19 C -0.106 4.106 20 H 0.114 0.886 21 C 0.012 3.988 22 N -0.366 5.366 23 C 0.349 3.651 24 O -0.472 6.472 25 C -0.222 4.222 26 C -0.086 4.086 27 C -0.141 4.141 28 C -0.156 4.156 29 C -0.131 4.131 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.128 0.872 36 H 0.080 0.920 37 H 0.228 0.772 38 H 0.087 0.913 39 H 0.043 0.957 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.097 0.903 43 H 0.247 0.753 44 H 0.151 0.849 45 H 0.118 0.882 46 H 0.113 0.887 47 H 0.102 0.898 48 H 0.108 0.892 49 H 0.097 0.903 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.990 8.954 13.275 20.619 hybrid contribution 1.605 -0.076 -0.675 1.743 sum -11.385 8.878 12.600 19.162 Atomic orbital electron populations 1.21790 0.92453 1.02288 1.02715 1.21956 0.97766 0.98910 0.92064 0.89393 1.23139 0.98206 0.90431 0.97411 1.64556 1.19858 1.37075 1.01922 1.21976 0.92291 0.96063 0.98089 1.20671 0.82634 0.87638 0.86249 1.90451 1.71477 1.58596 1.29142 1.41941 1.18885 1.32165 1.28202 1.19639 1.02519 1.11829 1.12179 0.90089 1.26052 0.97875 1.01068 0.96345 1.69672 1.22772 1.42609 1.21279 0.84996 0.77385 0.77865 0.78161 1.19539 1.19619 1.19653 1.23261 0.95563 0.98253 0.90860 1.22342 0.97045 0.96635 0.94609 0.88637 1.21351 0.99833 0.93852 0.83782 1.45942 1.66375 1.11232 1.13042 1.18436 0.76208 0.86766 0.83645 1.90740 1.56676 1.15302 1.84516 1.21913 1.08177 0.97575 0.94510 1.24350 0.89871 1.00516 0.93836 1.21554 1.02198 0.92254 0.98064 1.22450 1.02019 0.98068 0.93023 1.21302 1.02816 0.89941 0.99016 0.92574 0.91801 0.91112 0.88954 0.92933 0.87202 0.91997 0.77182 0.91337 0.95704 0.91020 0.92757 0.90284 0.75333 0.84944 0.88184 0.88652 0.89844 0.89227 0.90275 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.89 71.98 0.64 -1.42 16 2 C -0.09 -1.69 3.16 -9.91 -0.03 -1.72 16 3 H 0.09 1.54 7.85 -2.39 -0.02 1.53 16 4 C 0.04 0.82 6.35 86.44 0.55 1.36 16 5 N -0.51 -16.33 5.11 -886.76 -4.54 -20.87 16 6 C 0.05 1.67 5.31 85.56 0.45 2.12 16 7 C 0.44 20.95 7.42 87.66 0.65 21.60 16 8 O -0.61 -32.88 13.89 -3.08 -0.04 -32.92 16 9 N -0.57 -29.61 5.29 -306.98 -1.62 -31.23 16 10 C -0.33 -18.80 9.68 84.04 0.81 -17.99 16 11 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 12 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 13 N -0.92 -50.06 13.05 21.67 0.28 -49.78 16 14 Si 0.99 42.77 29.55 68.60 2.03 44.80 16 15 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 16 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 17 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 18 C 0.05 1.55 4.97 86.60 0.43 1.98 16 19 C -0.09 -2.01 2.61 -9.59 -0.03 -2.04 16 20 H 0.10 2.16 7.86 -2.39 -0.02 2.14 16 21 C 0.14 3.22 5.00 86.38 0.43 3.65 16 22 N -0.72 -17.80 5.47 -466.71 -2.55 -20.36 16 23 C 0.56 15.82 7.79 86.57 0.67 16.50 16 24 O -0.59 -20.64 16.77 -4.08 -0.07 -20.71 16 25 C -0.22 -4.98 6.09 -18.57 -0.11 -5.09 16 26 C -0.07 -1.28 10.43 24.66 0.26 -1.02 16 27 C -0.10 -1.34 6.80 30.52 0.21 -1.13 16 28 C -0.12 -1.54 7.17 31.67 0.23 -1.32 16 29 C -0.09 -1.70 6.02 30.52 0.18 -1.51 16 30 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 33 H 0.09 1.91 7.68 -2.39 -0.02 1.90 16 34 H 0.05 1.12 7.68 -2.38 -0.02 1.10 16 35 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 36 H 0.06 2.00 7.99 -2.38 -0.02 1.99 16 37 H 0.39 19.49 7.90 -92.71 -0.73 18.76 16 38 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 39 H 0.02 0.84 7.82 -2.39 -0.02 0.83 16 40 H 0.07 2.78 6.46 -2.38 -0.02 2.76 16 41 H 0.05 1.45 8.00 -2.39 -0.02 1.43 16 42 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.41 9.30 7.48 -92.71 -0.69 8.61 16 44 H 0.13 2.62 8.03 -2.91 -0.02 2.60 16 45 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.08 1.32 7.83 -2.38 -0.02 1.30 16 50 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -71.88 403.11 -1.17 -73.05 By element: Atomic # 1 Polarization: 44.80 SS G_CDS: -0.48 Total: 44.32 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: 5.82 Total: 13.71 kcal Atomic # 7 Polarization: -113.81 SS G_CDS: -8.43 Total: -122.24 kcal Atomic # 8 Polarization: -53.52 SS G_CDS: -0.11 Total: -53.63 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -71.88 -1.17 -73.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101869003.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.152 kcal (2) G-P(sol) polarization free energy of solvation -71.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds