Wall clock time and date at job start Tue Mar 31 2020 18:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.36395 * 2 1 4 4 C 1.54374 * 110.32811 * 237.81885 * 2 1 3 5 5 N 1.48551 * 104.59541 * 264.95498 * 4 2 1 6 6 C 1.46903 * 111.00202 * 200.95973 * 5 4 2 7 7 C 1.50709 * 109.46622 * 290.12199 * 6 5 4 8 8 O 1.21293 * 120.00303 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99647 * 179.97438 * 7 6 5 10 10 C 1.37094 * 119.99997 * 180.02562 * 9 7 6 11 11 H 1.08001 * 119.99732 * 0.02562 * 10 9 7 12 12 C 1.38943 * 120.00063 * 179.97438 * 10 9 7 13 13 N 1.31421 * 120.00098 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 120.00290 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46716 * 90.00081 * 14 12 10 16 16 H 1.48497 * 109.47319 * 210.00056 * 14 12 10 17 17 H 1.48498 * 109.46910 * 330.00297 * 14 12 10 18 18 C 1.48561 * 104.22369 * 320.51345 * 5 4 2 19 19 C 1.54259 * 110.32733 * 122.17650 * 2 1 3 20 20 H 1.09002 * 110.32223 * 0.02562 * 19 2 1 21 21 C 1.53001 * 110.32668 * 237.89662 * 19 2 1 22 22 N 1.46496 * 109.47275 * 176.42777 * 21 19 2 23 23 C 1.34776 * 120.00439 * 180.02562 * 22 21 19 24 24 O 1.21620 * 119.99562 * 0.02562 * 23 22 21 25 25 C 1.47100 * 120.00500 * 179.97438 * 23 22 21 26 26 C 1.32991 * 120.00157 * 180.02562 * 25 23 22 27 27 C 1.51403 * 136.31629 * 359.62071 * 26 25 23 28 28 C 1.53376 * 87.52110 * 206.06370 * 27 26 25 29 29 C 1.51408 * 136.31811 * 180.02562 * 26 25 23 30 30 H 1.09002 * 109.47426 * 297.81474 * 1 2 3 31 31 H 1.08997 * 109.47602 * 57.82471 * 1 2 3 32 32 H 1.09007 * 109.46614 * 177.81946 * 1 2 3 33 33 H 1.09004 * 110.41045 * 23.73158 * 4 2 1 34 34 H 1.08995 * 110.41604 * 146.05141 * 4 2 1 35 35 H 1.08991 * 109.47335 * 50.12209 * 6 5 4 36 36 H 1.08999 * 109.47033 * 170.12809 * 6 5 4 37 37 H 0.97000 * 120.00144 * 0.02562 * 9 7 6 38 38 H 0.96997 * 120.00114 * 180.02562 * 13 12 10 39 39 H 1.09005 * 110.41198 * 280.70728 * 18 5 4 40 40 H 1.08998 * 110.41368 * 158.26250 * 18 5 4 41 41 H 1.09003 * 109.47002 * 296.42688 * 21 19 2 42 42 H 1.09004 * 109.46984 * 56.42794 * 21 19 2 43 43 H 0.97005 * 120.00028 * 0.02562 * 22 21 19 44 44 H 1.08008 * 119.99733 * 359.97438 * 25 23 22 45 45 H 1.09001 * 113.56205 * 320.65256 * 27 26 25 46 46 H 1.09002 * 113.55659 * 91.37532 * 27 26 25 47 47 H 1.09001 * 113.96838 * 220.29768 * 28 27 26 48 48 H 1.08997 * 113.59578 * 88.79743 * 28 27 26 49 49 H 1.08998 * 113.55878 * 268.62786 * 29 26 25 50 50 H 1.09004 * 113.55761 * 39.34924 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0663 -0.7710 -1.2252 5 7 2.3149 -2.1466 -0.7224 6 6 3.2651 -2.8593 -1.5867 7 6 2.6105 -3.1628 -2.9099 8 8 1.4650 -2.8195 -3.1127 9 7 3.2981 -3.8156 -3.8678 10 6 2.7029 -4.0912 -5.0717 11 1 1.6831 -3.7848 -5.2525 12 6 3.4118 -4.7637 -6.0594 13 7 2.8411 -5.0283 -7.2132 14 14 5.1763 -5.2917 -5.7474 15 1 5.1882 -6.6550 -5.1588 16 1 5.9248 -5.2997 -7.0299 17 1 5.8185 -4.3402 -4.8054 18 6 2.8808 -1.9420 0.6358 19 6 2.0659 -0.7703 1.2244 20 1 1.2388 -1.1488 1.8251 21 6 2.9655 0.1340 2.0692 22 7 3.3947 -0.5880 3.2694 23 6 4.1987 0.0151 4.1674 24 8 4.5676 1.1590 3.9814 25 6 4.6292 -0.7097 5.3728 26 6 5.4222 -0.1143 6.2591 27 6 6.0872 1.2387 6.3981 28 6 7.1538 0.5517 7.2600 29 6 6.0689 -0.4896 7.5757 30 1 -0.3634 0.4795 0.9089 31 1 -0.3634 0.5472 -0.8698 32 1 -0.3633 -1.0270 -0.0391 33 1 1.3214 -0.7859 -2.0209 34 1 2.9929 -0.3213 -1.5816 35 1 4.1446 -2.2367 -1.7508 36 1 3.5640 -3.7913 -1.1071 37 1 4.2141 -4.0904 -3.7055 38 1 3.3359 -5.4982 -7.9026 39 1 3.9361 -1.6768 0.5720 40 1 2.7492 -2.8387 1.2415 41 1 3.8403 0.4227 1.4866 42 1 2.4122 1.0268 2.3607 43 1 3.1002 -1.5003 3.4180 44 1 4.3006 -1.7251 5.5386 45 1 6.4754 1.6320 5.4586 46 1 5.4864 1.9652 6.9452 47 1 7.4682 1.1361 8.1247 48 1 7.9904 0.1550 6.6849 49 1 5.4630 -0.2376 8.4460 50 1 6.4420 -1.5134 7.6016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101873547.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:19 Heat of formation + Delta-G solvation = -26.071273 kcal Electronic energy + Delta-G solvation = -28289.192018 eV Core-core repulsion = 24317.440844 eV Total energy + Delta-G solvation = -3971.751175 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.28153 -39.54605 -38.61742 -37.89645 -35.07966 -33.96482 -33.09852 -31.64084 -31.50782 -30.00583 -27.79663 -26.35640 -26.18392 -24.97134 -23.84100 -22.80016 -21.29124 -20.83771 -19.96864 -19.31090 -18.65066 -18.15501 -17.20078 -16.52823 -15.99391 -15.95468 -15.73317 -15.43871 -15.05766 -14.82883 -14.71064 -14.31083 -13.95950 -13.86081 -13.52190 -13.31941 -12.92921 -12.88737 -12.87861 -12.45247 -12.37663 -12.20181 -12.15004 -12.12236 -11.72317 -11.45930 -11.44207 -11.26141 -11.02117 -10.97057 -10.81247 -10.64864 -10.61265 -10.56987 -9.96847 -9.93564 -9.64308 -9.54389 -9.22422 -8.61189 -8.17566 -8.08460 -6.30105 -3.81349 1.01338 2.90951 3.02800 3.05908 3.07038 3.15222 3.75364 3.93117 3.97442 4.06610 4.10991 4.31076 4.46205 4.55361 4.62597 4.67056 4.80409 4.90127 5.07925 5.14758 5.17411 5.20346 5.22198 5.25143 5.27568 5.38346 5.45196 5.52658 5.54332 5.59898 5.62329 5.66098 5.74825 5.77713 5.83915 5.87458 5.93145 5.99639 6.05153 6.11583 6.20183 6.23999 6.39775 6.46108 7.05322 7.11340 7.28877 7.59557 8.01996 8.15530 8.61554 8.96524 9.43730 9.85110 10.83081 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015363 B = 0.002020 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.133334 B =13857.528103 C =15267.919921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.087 4.087 3 H 0.075 0.925 4 C 0.039 3.961 5 N -0.482 5.482 6 C 0.031 3.969 7 C 0.454 3.546 8 O -0.558 6.558 9 N -0.593 5.593 10 C -0.303 4.303 11 H 0.120 0.880 12 C 0.041 3.959 13 N -0.882 5.882 14 Si 0.879 3.121 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.270 1.270 18 C 0.033 3.967 19 C -0.100 4.100 20 H 0.089 0.911 21 C 0.129 3.871 22 N -0.725 5.725 23 C 0.549 3.451 24 O -0.544 6.544 25 C -0.201 4.201 26 C -0.061 4.061 27 C -0.107 4.107 28 C -0.143 4.143 29 C -0.109 4.109 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.037 0.963 35 H 0.050 0.950 36 H 0.089 0.911 37 H 0.370 0.630 38 H 0.273 0.727 39 H 0.043 0.957 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.402 0.598 44 H 0.133 0.867 45 H 0.087 0.913 46 H 0.098 0.902 47 H 0.078 0.922 48 H 0.085 0.915 49 H 0.101 0.899 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.510 8.970 29.160 31.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.106 4.106 3 H 0.094 0.906 4 C -0.089 4.089 5 N -0.205 5.205 6 C -0.101 4.101 7 C 0.240 3.760 8 O -0.439 6.439 9 N -0.233 5.233 10 C -0.432 4.432 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.522 5.522 14 Si 0.706 3.294 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.196 1.196 18 C -0.095 4.095 19 C -0.120 4.120 20 H 0.107 0.893 21 C 0.006 3.994 22 N -0.377 5.377 23 C 0.338 3.662 24 O -0.424 6.424 25 C -0.222 4.222 26 C -0.063 4.063 27 C -0.143 4.143 28 C -0.181 4.181 29 C -0.146 4.146 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.121 0.879 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.108 0.892 37 H 0.202 0.798 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.236 0.764 44 H 0.151 0.849 45 H 0.105 0.895 46 H 0.116 0.884 47 H 0.097 0.903 48 H 0.103 0.897 49 H 0.119 0.881 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.508 9.600 28.632 30.696 hybrid contribution 2.138 -0.735 -0.027 2.261 sum 7.645 8.865 28.605 30.907 Atomic orbital electron populations 1.21788 0.93876 1.02838 1.01047 1.21862 0.96909 0.98479 0.93366 0.90636 1.23280 1.00701 0.87349 0.97547 1.65135 1.39282 1.15560 1.00558 1.22095 0.93840 0.99703 0.94434 1.19599 0.87657 0.83702 0.85058 1.90544 1.17664 1.55145 1.80587 1.42209 1.13736 1.52820 1.14491 1.19419 1.01029 1.34515 0.88232 0.86283 1.25031 0.98355 0.97473 0.95335 1.69623 1.37301 1.40552 1.04756 0.86678 0.84715 0.79462 0.78563 1.19625 1.20212 1.19585 1.23242 0.96552 0.97902 0.91849 1.22247 0.97897 0.95295 0.96527 0.89292 1.21500 0.98097 0.94817 0.85032 1.45911 1.50980 1.17969 1.22802 1.18434 0.78376 0.86283 0.83127 1.90781 1.56152 1.17980 1.77443 1.21590 1.03125 1.01320 0.96165 1.23494 0.90158 0.97957 0.94692 1.22231 0.96163 0.94682 1.01263 1.22736 0.96643 0.98198 1.00488 1.22362 0.96873 1.00463 0.94909 0.93248 0.92456 0.91463 0.87904 0.94452 0.93215 0.89242 0.79784 0.91654 0.93838 0.90243 0.91431 0.91199 0.76391 0.84943 0.89490 0.88412 0.90331 0.89686 0.88067 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.90 37.16 0.33 -1.23 16 2 C -0.09 -0.99 3.30 -89.24 -0.29 -1.29 16 3 H 0.08 0.79 7.71 -51.93 -0.40 0.39 16 4 C 0.04 0.59 5.34 -2.19 -0.01 0.58 16 5 N -0.48 -7.47 5.06 -231.41 -1.17 -8.64 16 6 C 0.03 0.52 5.30 -4.97 -0.03 0.50 16 7 C 0.45 10.30 7.58 -10.98 -0.08 10.22 16 8 O -0.56 -14.79 14.42 5.55 0.08 -14.71 16 9 N -0.59 -14.16 5.09 -10.96 -0.06 -14.21 16 10 C -0.30 -8.59 10.16 -14.94 -0.15 -8.74 16 11 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 12 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 13 N -0.88 -25.83 13.96 55.50 0.77 -25.06 16 14 Si 0.88 19.45 27.74 -169.99 -4.71 14.74 16 15 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 17 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 18 C 0.03 0.37 5.78 -2.18 -0.01 0.36 16 19 C -0.10 -0.98 2.75 -89.24 -0.25 -1.23 16 20 H 0.09 0.82 7.71 -51.93 -0.40 0.41 16 21 C 0.13 1.24 4.79 -4.04 -0.02 1.22 16 22 N -0.73 -6.22 5.41 -61.49 -0.33 -6.55 16 23 C 0.55 5.79 7.76 -12.67 -0.10 5.69 16 24 O -0.54 -7.70 15.15 5.26 0.08 -7.62 16 25 C -0.20 -1.61 10.03 -37.81 -0.38 -1.99 16 26 C -0.06 -0.47 6.93 -100.48 -0.70 -1.17 16 27 C -0.11 -0.82 6.99 -27.56 -0.19 -1.02 16 28 C -0.14 -0.78 8.17 -26.21 -0.21 -0.99 16 29 C -0.11 -0.56 7.95 -27.41 -0.22 -0.78 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 33 H 0.10 1.89 6.63 -51.93 -0.34 1.54 16 34 H 0.04 0.56 7.83 -51.93 -0.41 0.15 16 35 H 0.05 0.75 7.88 -51.93 -0.41 0.35 16 36 H 0.09 1.31 8.13 -51.93 -0.42 0.89 16 37 H 0.37 7.78 5.76 -40.82 -0.24 7.54 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.04 0.48 7.64 -51.93 -0.40 0.08 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.74 8.02 -51.93 -0.42 0.32 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.40 2.47 8.35 -40.82 -0.34 2.13 16 44 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 45 H 0.09 0.84 7.49 -51.93 -0.39 0.45 16 46 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 403.11 15.07 6.07 6.07 Total: -1.00 -34.56 403.11 -10.04 -44.61 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -8.37 Total: 10.21 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -2.41 Total: 1.16 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.79 Total: -54.46 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.16 Total: -22.32 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.71 Total: 14.74 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.56 -10.04 -44.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101873547.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.534 kcal (2) G-P(sol) polarization free energy of solvation -34.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds