Wall clock time and date at job start Tue Mar 31 2020 18:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.36395 * 2 1 4 4 C 1.54374 * 110.32811 * 237.81885 * 2 1 3 5 5 N 1.48551 * 104.59541 * 264.95498 * 4 2 1 6 6 C 1.46903 * 111.00202 * 200.95973 * 5 4 2 7 7 C 1.50709 * 109.46622 * 290.12199 * 6 5 4 8 8 O 1.21293 * 120.00303 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99647 * 179.97438 * 7 6 5 10 10 C 1.37094 * 119.99997 * 180.02562 * 9 7 6 11 11 H 1.08001 * 119.99732 * 0.02562 * 10 9 7 12 12 C 1.38943 * 120.00063 * 179.97438 * 10 9 7 13 13 N 1.31421 * 120.00098 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 120.00290 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46716 * 90.00081 * 14 12 10 16 16 H 1.48497 * 109.47319 * 210.00056 * 14 12 10 17 17 H 1.48498 * 109.46910 * 330.00297 * 14 12 10 18 18 C 1.48561 * 104.22369 * 320.51345 * 5 4 2 19 19 C 1.54259 * 110.32733 * 122.17650 * 2 1 3 20 20 H 1.09002 * 110.32223 * 0.02562 * 19 2 1 21 21 C 1.53001 * 110.32668 * 237.89662 * 19 2 1 22 22 N 1.46496 * 109.47275 * 176.42777 * 21 19 2 23 23 C 1.34776 * 120.00439 * 180.02562 * 22 21 19 24 24 O 1.21620 * 119.99562 * 0.02562 * 23 22 21 25 25 C 1.47100 * 120.00500 * 179.97438 * 23 22 21 26 26 C 1.32991 * 120.00157 * 180.02562 * 25 23 22 27 27 C 1.51403 * 136.31629 * 359.62071 * 26 25 23 28 28 C 1.53376 * 87.52110 * 206.06370 * 27 26 25 29 29 C 1.51408 * 136.31811 * 180.02562 * 26 25 23 30 30 H 1.09002 * 109.47426 * 297.81474 * 1 2 3 31 31 H 1.08997 * 109.47602 * 57.82471 * 1 2 3 32 32 H 1.09007 * 109.46614 * 177.81946 * 1 2 3 33 33 H 1.09004 * 110.41045 * 23.73158 * 4 2 1 34 34 H 1.08995 * 110.41604 * 146.05141 * 4 2 1 35 35 H 1.08991 * 109.47335 * 50.12209 * 6 5 4 36 36 H 1.08999 * 109.47033 * 170.12809 * 6 5 4 37 37 H 0.97000 * 120.00144 * 0.02562 * 9 7 6 38 38 H 0.96997 * 120.00114 * 180.02562 * 13 12 10 39 39 H 1.09005 * 110.41198 * 280.70728 * 18 5 4 40 40 H 1.08998 * 110.41368 * 158.26250 * 18 5 4 41 41 H 1.09003 * 109.47002 * 296.42688 * 21 19 2 42 42 H 1.09004 * 109.46984 * 56.42794 * 21 19 2 43 43 H 0.97005 * 120.00028 * 0.02562 * 22 21 19 44 44 H 1.08008 * 119.99733 * 359.97438 * 25 23 22 45 45 H 1.09001 * 113.56205 * 320.65256 * 27 26 25 46 46 H 1.09002 * 113.55659 * 91.37532 * 27 26 25 47 47 H 1.09001 * 113.96838 * 220.29768 * 28 27 26 48 48 H 1.08997 * 113.59578 * 88.79743 * 28 27 26 49 49 H 1.08998 * 113.55878 * 268.62786 * 29 26 25 50 50 H 1.09004 * 113.55761 * 39.34924 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0663 -0.7710 -1.2252 5 7 2.3149 -2.1466 -0.7224 6 6 3.2651 -2.8593 -1.5867 7 6 2.6105 -3.1628 -2.9099 8 8 1.4650 -2.8195 -3.1127 9 7 3.2981 -3.8156 -3.8678 10 6 2.7029 -4.0912 -5.0717 11 1 1.6831 -3.7848 -5.2525 12 6 3.4118 -4.7637 -6.0594 13 7 2.8411 -5.0283 -7.2132 14 14 5.1763 -5.2917 -5.7474 15 1 5.1882 -6.6550 -5.1588 16 1 5.9248 -5.2997 -7.0299 17 1 5.8185 -4.3402 -4.8054 18 6 2.8808 -1.9420 0.6358 19 6 2.0659 -0.7703 1.2244 20 1 1.2388 -1.1488 1.8251 21 6 2.9655 0.1340 2.0692 22 7 3.3947 -0.5880 3.2694 23 6 4.1987 0.0151 4.1674 24 8 4.5676 1.1590 3.9814 25 6 4.6292 -0.7097 5.3728 26 6 5.4222 -0.1143 6.2591 27 6 6.0872 1.2387 6.3981 28 6 7.1538 0.5517 7.2600 29 6 6.0689 -0.4896 7.5757 30 1 -0.3634 0.4795 0.9089 31 1 -0.3634 0.5472 -0.8698 32 1 -0.3633 -1.0270 -0.0391 33 1 1.3214 -0.7859 -2.0209 34 1 2.9929 -0.3213 -1.5816 35 1 4.1446 -2.2367 -1.7508 36 1 3.5640 -3.7913 -1.1071 37 1 4.2141 -4.0904 -3.7055 38 1 3.3359 -5.4982 -7.9026 39 1 3.9361 -1.6768 0.5720 40 1 2.7492 -2.8387 1.2415 41 1 3.8403 0.4227 1.4866 42 1 2.4122 1.0268 2.3607 43 1 3.1002 -1.5003 3.4180 44 1 4.3006 -1.7251 5.5386 45 1 6.4754 1.6320 5.4586 46 1 5.4864 1.9652 6.9452 47 1 7.4682 1.1361 8.1247 48 1 7.9904 0.1550 6.6849 49 1 5.4630 -0.2376 8.4460 50 1 6.4420 -1.5134 7.6016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101873547.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:18 Heat of formation + Delta-G solvation = -52.208436 kcal Electronic energy + Delta-G solvation = -28290.325411 eV Core-core repulsion = 24317.440844 eV Total energy + Delta-G solvation = -3972.884567 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.16036 -40.61585 -39.66583 -39.06696 -36.19481 -35.76457 -34.24315 -33.70021 -32.18691 -30.84756 -29.18956 -27.31725 -26.68612 -26.55783 -24.85373 -23.67773 -22.19307 -21.67854 -21.30718 -20.85080 -20.12269 -19.18323 -17.90725 -17.69989 -17.31240 -16.85378 -16.69328 -16.44142 -16.31649 -16.04957 -15.65966 -15.33892 -15.22068 -14.98613 -14.78365 -14.56815 -14.47902 -14.07338 -13.92464 -13.62877 -13.33439 -13.31588 -13.02494 -12.93214 -12.82687 -12.63650 -12.43068 -12.42529 -12.18637 -11.98826 -11.90288 -11.81586 -11.61308 -11.55298 -11.49349 -11.44260 -10.68256 -10.39446 -10.30428 -10.23922 -9.89813 -9.36149 -8.41375 -6.01944 0.40337 1.29070 1.34607 1.43251 1.96388 2.22067 2.22286 2.34360 2.65851 3.13898 3.24982 3.41436 3.55391 3.60340 3.69205 3.83127 3.85071 4.13494 4.17866 4.23275 4.27736 4.30943 4.36471 4.40257 4.45658 4.61457 4.62856 4.65333 4.70684 4.75348 4.80041 4.87529 4.91701 4.95846 4.99974 5.04858 5.15975 5.17030 5.26720 5.28971 5.36353 5.43761 5.49853 5.52849 5.69229 5.87302 5.92896 6.04770 6.59977 6.63699 6.88773 7.30582 7.40088 7.97809 8.76325 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015363 B = 0.002020 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.133334 B =13857.528103 C =15267.919921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 H 0.088 0.912 4 C 0.037 3.963 5 N -0.505 5.505 6 C 0.043 3.957 7 C 0.452 3.548 8 O -0.605 6.605 9 N -0.594 5.594 10 C -0.326 4.326 11 H 0.055 0.945 12 C -0.016 4.016 13 N -0.935 5.935 14 Si 0.965 3.035 15 H -0.256 1.256 16 H -0.276 1.276 17 H -0.234 1.234 18 C 0.036 3.964 19 C -0.084 4.084 20 H 0.103 0.897 21 C 0.138 3.862 22 N -0.713 5.713 23 C 0.542 3.458 24 O -0.590 6.590 25 C -0.210 4.210 26 C -0.072 4.072 27 C -0.119 4.119 28 C -0.137 4.137 29 C -0.097 4.097 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.037 0.963 35 H 0.074 0.926 36 H 0.122 0.878 37 H 0.388 0.612 38 H 0.279 0.721 39 H 0.053 0.947 40 H 0.102 0.898 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.416 0.584 44 H 0.163 0.837 45 H 0.058 0.942 46 H 0.100 0.900 47 H 0.094 0.906 48 H 0.083 0.917 49 H 0.117 0.883 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.338 7.944 33.004 35.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.101 4.101 3 H 0.106 0.894 4 C -0.091 4.091 5 N -0.229 5.229 6 C -0.089 4.089 7 C 0.239 3.761 8 O -0.488 6.488 9 N -0.236 5.236 10 C -0.456 4.456 11 H 0.073 0.927 12 C -0.214 4.214 13 N -0.576 5.576 14 Si 0.785 3.215 15 H -0.180 1.180 16 H -0.201 1.201 17 H -0.157 1.157 18 C -0.091 4.091 19 C -0.104 4.104 20 H 0.121 0.879 21 C 0.014 3.986 22 N -0.364 5.364 23 C 0.332 3.668 24 O -0.472 6.472 25 C -0.230 4.230 26 C -0.074 4.074 27 C -0.156 4.156 28 C -0.174 4.174 29 C -0.133 4.133 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.092 0.908 36 H 0.140 0.860 37 H 0.224 0.776 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.120 0.880 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.253 0.747 44 H 0.181 0.819 45 H 0.077 0.923 46 H 0.118 0.882 47 H 0.112 0.888 48 H 0.101 0.899 49 H 0.135 0.865 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.324 8.552 32.509 34.630 hybrid contribution 1.106 -0.325 -1.252 1.702 sum 9.430 8.227 31.257 33.669 Atomic orbital electron populations 1.21744 0.93890 1.01688 1.01861 1.21826 0.96848 0.98881 0.92555 0.89372 1.23179 0.99600 0.88274 0.98056 1.65072 1.40056 1.15539 1.02242 1.22017 0.93894 1.01910 0.91055 1.20869 0.87125 0.81403 0.86663 1.90533 1.20145 1.56288 1.81847 1.42040 1.14594 1.53606 1.13350 1.18986 0.99252 1.36291 0.91029 0.92716 1.26105 1.04506 0.96569 0.94252 1.69808 1.40101 1.41457 1.06203 0.85366 0.76662 0.80141 0.79351 1.17993 1.20064 1.15715 1.23344 0.96984 0.99351 0.89435 1.22112 0.98047 0.94510 0.95695 0.87902 1.21316 0.97402 0.94728 0.85167 1.45788 1.50202 1.18487 1.21960 1.18943 0.78010 0.85905 0.83924 1.90765 1.57919 1.20015 1.78509 1.21737 1.03626 1.02503 0.95126 1.23905 0.89657 0.97944 0.95915 1.22320 0.97477 0.95226 1.00591 1.22731 0.96178 0.98127 1.00399 1.22377 0.96130 1.01041 0.93759 0.90783 0.93446 0.93400 0.92301 0.94483 0.90783 0.86001 0.77616 0.91189 0.92900 0.88022 0.92656 0.91531 0.74656 0.81942 0.92317 0.88207 0.88788 0.89860 0.86456 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.90 71.98 0.64 -2.35 16 2 C -0.08 -1.79 3.30 -9.90 -0.03 -1.82 16 3 H 0.09 1.73 7.71 -2.38 -0.02 1.71 16 4 C 0.04 1.12 5.34 86.45 0.46 1.58 16 5 N -0.50 -14.88 5.06 -886.06 -4.48 -19.37 16 6 C 0.04 1.33 5.30 85.56 0.45 1.79 16 7 C 0.45 20.67 7.58 87.66 0.66 21.33 16 8 O -0.60 -33.72 14.42 -3.07 -0.04 -33.77 16 9 N -0.59 -28.36 5.09 -306.98 -1.56 -29.92 16 10 C -0.33 -19.32 10.16 84.04 0.85 -18.46 16 11 H 0.05 3.86 7.39 -2.91 -0.02 3.84 16 12 C -0.02 -0.89 5.50 84.92 0.47 -0.42 16 13 N -0.93 -56.82 13.96 21.66 0.30 -56.52 16 14 Si 0.96 39.15 27.74 68.60 1.90 41.05 16 15 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 16 H -0.28 -11.11 7.11 99.48 0.71 -10.41 16 17 H -0.23 -8.04 6.52 99.48 0.65 -7.39 16 18 C 0.04 0.69 5.78 86.45 0.50 1.19 16 19 C -0.08 -1.43 2.75 -9.90 -0.03 -1.46 16 20 H 0.10 1.53 7.71 -2.39 -0.02 1.52 16 21 C 0.14 2.34 4.79 86.38 0.41 2.75 16 22 N -0.71 -10.33 5.41 -466.71 -2.52 -12.85 16 23 C 0.54 10.58 7.76 86.57 0.67 11.25 16 24 O -0.59 -16.56 15.15 -4.09 -0.06 -16.62 16 25 C -0.21 -2.86 10.03 23.43 0.23 -2.62 16 26 C -0.07 -0.98 6.93 -17.17 -0.12 -1.10 16 27 C -0.12 -1.77 6.99 30.06 0.21 -1.56 16 28 C -0.14 -1.21 8.17 30.93 0.25 -0.96 16 29 C -0.10 -0.69 7.95 30.15 0.24 -0.45 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.06 2.30 6.63 -2.39 -0.02 2.29 16 34 H 0.04 1.10 7.83 -2.39 -0.02 1.08 16 35 H 0.07 1.99 7.88 -2.39 -0.02 1.97 16 36 H 0.12 3.06 8.13 -2.39 -0.02 3.04 16 37 H 0.39 15.38 5.76 -92.71 -0.53 14.85 16 38 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.05 0.96 7.64 -2.38 -0.02 0.94 16 40 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.06 1.11 8.02 -2.39 -0.02 1.09 16 42 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.42 3.57 8.35 -92.70 -0.77 2.80 16 44 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 45 H 0.06 1.19 7.49 -2.39 -0.02 1.17 16 46 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.08 0.76 8.14 -2.39 -0.02 0.75 16 49 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 50 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 Total: -1.00 -83.27 403.11 -1.01 -84.28 By element: Atomic # 1 Polarization: 35.45 SS G_CDS: -0.42 Total: 35.03 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 5.89 Total: 8.69 kcal Atomic # 7 Polarization: -110.39 SS G_CDS: -8.27 Total: -118.66 kcal Atomic # 8 Polarization: -50.28 SS G_CDS: -0.11 Total: -50.38 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 1.90 Total: 41.05 kcal Total: -83.27 -1.01 -84.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101873547.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.067 kcal (2) G-P(sol) polarization free energy of solvation -83.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds