Wall clock time and date at job start Tue Mar 31 2020 18:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47172 * 348.84184 * 3 2 1 5 5 C 1.53006 * 109.47127 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47126 * 180.02562 * 5 4 3 7 7 O 1.21279 * 119.99926 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99773 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99531 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46883 * 179.97438 * 9 8 6 11 11 H 1.08999 * 110.64086 * 56.69995 * 10 9 8 12 12 C 1.54941 * 110.72298 * 293.55006 * 10 9 8 13 13 N 1.48536 * 103.22265 * 204.22290 * 12 10 9 14 14 C 1.46901 * 110.99796 * 159.71956 * 13 12 10 15 15 C 1.50698 * 109.47347 * 170.00202 * 14 13 12 16 16 O 1.21298 * 119.99634 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00480 * 179.97438 * 15 14 13 18 18 C 1.37091 * 120.00076 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00394 * 0.02562 * 18 17 15 20 20 C 1.38953 * 119.99632 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99977 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99926 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47179 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47398 * 120.00088 * 22 20 18 25 25 H 1.48508 * 109.46788 * 239.99973 * 22 20 18 26 26 C 1.47903 * 105.81739 * 39.21027 * 13 12 10 27 27 C 1.53990 * 107.06057 * 334.66547 * 26 13 12 28 28 H 1.09001 * 110.30803 * 120.14595 * 27 26 13 29 29 C 1.53000 * 110.31004 * 242.30960 * 27 26 13 30 30 H 4.44645 * 5.63342 * 180.02562 * 4 1 2 31 31 H 1.09001 * 109.47041 * 228.84558 * 3 2 1 32 32 H 1.08996 * 109.47367 * 108.84157 * 3 2 1 33 33 H 1.09001 * 109.47289 * 59.99972 * 4 3 2 34 34 H 1.08996 * 109.47853 * 300.00084 * 4 3 2 35 35 H 1.08998 * 109.46509 * 60.00429 * 5 4 3 36 36 H 1.08993 * 109.46955 * 299.99989 * 5 4 3 37 37 H 0.96992 * 120.00503 * 359.97438 * 8 6 5 38 38 H 1.09001 * 109.46891 * 60.00097 * 9 8 6 39 39 H 1.08993 * 109.47378 * 299.99469 * 9 8 6 40 40 H 1.09000 * 110.66681 * 322.65960 * 12 10 9 41 41 H 1.09002 * 110.66669 * 85.79424 * 12 10 9 42 42 H 1.09008 * 109.47114 * 290.00589 * 14 13 12 43 43 H 1.09000 * 109.46757 * 50.00488 * 14 13 12 44 44 H 0.97008 * 119.99407 * 0.02562 * 17 15 14 45 45 H 0.97005 * 119.99884 * 180.02562 * 21 20 18 46 46 H 1.09005 * 109.91864 * 94.02357 * 26 13 12 47 47 H 1.09002 * 109.91524 * 215.30828 * 26 13 12 48 48 H 1.08998 * 109.47289 * 175.71444 * 29 27 26 49 49 H 1.09000 * 109.47251 * 295.71560 * 29 27 26 50 50 H 1.09007 * 109.47217 * 55.71577 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4143 0.2791 5 6 4.6867 -1.4137 0.2785 6 6 5.1897 -2.8076 0.5528 7 8 4.4020 -3.7123 0.7317 8 7 6.5148 -3.0486 0.6004 9 6 7.0037 -4.4036 0.8676 10 6 8.5338 -4.4030 0.8669 11 1 8.9181 -3.6884 1.5946 12 6 9.0813 -4.0920 -0.5489 13 7 10.4351 -4.7029 -0.5314 14 6 10.9239 -4.9386 -1.8965 15 6 12.3798 -5.3246 -1.8491 16 8 12.9537 -5.3968 -0.7829 17 7 13.0441 -5.5906 -2.9912 18 6 14.3687 -5.9412 -2.9481 19 1 14.8798 -6.0047 -1.9989 20 6 15.0535 -6.2150 -4.1257 21 7 14.4314 -6.1382 -5.2807 22 14 16.8583 -6.6935 -4.0669 23 1 17.3208 -6.7083 -2.6559 24 1 17.0319 -8.0440 -4.6595 25 1 17.6571 -5.7078 -4.8389 26 6 10.2934 -5.9760 0.2080 27 6 9.0815 -5.8216 1.1454 28 1 8.3254 -6.5715 0.9130 29 6 9.5209 -5.9438 2.6059 30 1 -1.0498 -0.0004 -0.0001 31 1 3.0090 0.6771 0.7738 32 1 3.0092 0.3327 -0.9725 33 1 2.7936 -2.0909 -0.4946 34 1 2.7935 -1.7465 1.2517 35 1 5.0500 -0.7372 1.0520 36 1 5.0494 -1.0819 -0.6942 37 1 7.1448 -2.3251 0.4577 38 1 6.6406 -5.0800 0.0939 39 1 6.6407 -4.7356 1.8402 40 1 8.4588 -4.5578 -1.3129 41 1 9.1470 -3.0157 -0.7080 42 1 10.3492 -5.7438 -2.3543 43 1 10.8082 -4.0290 -2.4858 44 1 12.5850 -5.5332 -3.8439 45 1 14.9094 -6.3296 -6.1028 46 1 10.1201 -6.7942 -0.4911 47 1 11.1931 -6.1680 0.7926 48 1 8.6682 -5.7571 3.2587 49 1 9.9042 -6.9480 2.7871 50 1 10.3033 -5.2135 2.8123 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101922114.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:28 Heat of formation + Delta-G solvation = -35.448420 kcal Electronic energy + Delta-G solvation = -27821.850146 eV Core-core repulsion = 23849.692348 eV Total energy + Delta-G solvation = -3972.157798 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.22439 -39.33211 -37.79977 -36.06420 -35.09169 -33.93329 -33.13246 -32.65920 -31.19357 -30.46586 -28.50402 -27.52094 -26.03741 -24.92505 -23.49794 -22.51034 -20.97054 -20.79606 -19.91034 -19.05170 -18.57554 -17.83903 -17.15339 -16.53281 -16.35288 -15.93273 -15.61242 -15.26007 -14.94686 -14.56871 -14.48739 -14.12649 -13.96660 -13.86573 -13.70649 -13.48136 -13.10774 -13.07581 -12.92819 -12.58974 -12.22041 -12.19048 -11.99338 -11.75860 -11.59334 -11.40724 -11.39757 -11.19651 -10.98950 -10.85762 -10.69261 -10.60674 -10.55887 -10.46795 -10.34136 -10.21746 -10.05477 -9.49815 -9.32479 -8.49946 -7.98457 -7.92725 -6.41039 -3.81644 2.38732 2.42136 2.48373 2.92163 3.16441 3.26902 3.34070 3.91554 3.97407 3.98417 4.23314 4.34525 4.49065 4.55925 4.57438 4.65888 4.67981 5.01098 5.04205 5.11626 5.13307 5.17740 5.18927 5.19980 5.24924 5.29805 5.48326 5.49506 5.58146 5.66677 5.69010 5.70189 5.72667 5.80180 5.84717 5.86643 5.96405 6.01861 6.09894 6.18487 6.27987 6.29189 6.47638 7.15597 7.20614 7.22684 7.26250 7.55978 7.96000 8.07424 8.63116 9.19411 9.55834 10.07963 10.76915 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018511 B = 0.001714 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.232358 B =16331.505486 C =17504.099891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.186 4.186 3 C -0.014 4.014 4 C -0.100 4.100 5 C -0.142 4.142 6 C 0.511 3.489 7 O -0.542 6.542 8 N -0.729 5.729 9 C 0.129 3.871 10 C -0.100 4.100 11 H 0.092 0.908 12 C 0.037 3.963 13 N -0.490 5.490 14 C 0.036 3.964 15 C 0.445 3.555 16 O -0.576 6.576 17 N -0.567 5.567 18 C -0.297 4.297 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.928 3.072 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.048 3.952 27 C -0.094 4.094 28 H 0.075 0.925 29 C -0.140 4.140 30 H 0.216 0.784 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.403 0.597 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.044 0.956 41 H 0.079 0.921 42 H 0.049 0.951 43 H 0.087 0.913 44 H 0.391 0.609 45 H 0.270 0.730 46 H 0.040 0.960 47 H 0.094 0.906 48 H 0.051 0.949 49 H 0.057 0.943 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.837 10.238 9.895 26.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.186 4.186 3 C -0.051 4.051 4 C -0.138 4.138 5 C -0.182 4.182 6 C 0.297 3.703 7 O -0.420 6.420 8 N -0.381 5.381 9 C 0.005 3.995 10 C -0.119 4.119 11 H 0.110 0.890 12 C -0.091 4.091 13 N -0.213 5.213 14 C -0.095 4.095 15 C 0.230 3.770 16 O -0.460 6.460 17 N -0.204 5.204 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.080 4.080 27 C -0.114 4.114 28 H 0.093 0.907 29 C -0.198 4.198 30 H 0.233 0.767 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.237 0.763 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.097 0.903 42 H 0.067 0.933 43 H 0.106 0.894 44 H 0.224 0.776 45 H 0.080 0.920 46 H 0.058 0.942 47 H 0.113 0.887 48 H 0.070 0.930 49 H 0.076 0.924 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -21.523 9.818 10.801 26.006 hybrid contribution 0.218 -0.408 -1.302 1.382 sum -21.306 9.410 9.499 25.154 Atomic orbital electron populations 1.24931 0.96042 1.00648 1.01212 1.23099 0.94594 1.00562 1.00380 1.18770 0.84903 0.98119 1.03274 1.21278 0.92920 0.95515 1.04047 1.21691 0.97454 0.94589 1.04471 1.20688 0.82146 0.91084 0.76364 1.90721 1.55347 1.46694 1.49190 1.46064 1.07133 1.11756 1.73185 1.21409 0.92973 0.83432 1.01639 1.22409 0.92861 0.98552 0.98086 0.88957 1.23321 0.89967 1.00301 0.95531 1.64466 1.20938 1.22343 1.13597 1.22081 0.96175 1.01034 0.90247 1.19721 0.87794 0.84368 0.85079 1.90511 1.69185 1.56862 1.29419 1.41869 1.10943 1.60489 1.07083 1.19742 0.85538 1.42563 0.94836 0.87896 1.25249 1.00404 0.97660 0.94665 1.69622 1.37388 1.49678 0.97755 0.85814 0.82075 0.77975 0.78565 1.19224 1.20807 1.20775 1.22973 0.98227 0.90581 0.96203 1.21998 0.97330 0.95539 0.96540 0.90704 1.21820 1.01131 1.02345 0.94497 0.76700 0.89429 0.89375 0.90706 0.90749 0.88532 0.88458 0.76301 0.91426 0.91250 0.93781 0.90251 0.93262 0.89442 0.77566 0.91978 0.94186 0.88749 0.92967 0.92428 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.56 19.25 29.55 0.57 -0.99 16 2 C -0.19 -1.49 13.34 -37.12 -0.50 -1.99 16 3 C -0.01 -0.08 5.70 -29.52 -0.17 -0.25 16 4 C -0.10 -0.68 4.46 -26.73 -0.12 -0.80 16 5 C -0.14 -0.76 5.70 -27.88 -0.16 -0.91 16 6 C 0.51 4.63 7.83 -10.98 -0.09 4.54 16 7 O -0.54 -7.30 15.98 5.56 0.09 -7.21 16 8 N -0.73 -5.57 5.40 -60.29 -0.33 -5.90 16 9 C 0.13 1.18 4.99 -4.04 -0.02 1.16 16 10 C -0.10 -0.97 2.67 -88.76 -0.24 -1.21 16 11 H 0.09 0.88 7.87 -51.93 -0.41 0.47 16 12 C 0.04 0.42 5.66 -1.89 -0.01 0.41 16 13 N -0.49 -7.78 4.91 -231.88 -1.14 -8.92 16 14 C 0.04 0.64 5.27 -4.98 -0.03 0.61 16 15 C 0.45 10.44 7.61 -10.99 -0.08 10.36 16 16 O -0.58 -15.46 14.87 5.54 0.08 -15.38 16 17 N -0.57 -14.31 5.29 -10.97 -0.06 -14.37 16 18 C -0.30 -8.27 9.68 -14.94 -0.14 -8.41 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 22 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 C 0.05 0.73 5.53 -2.76 -0.02 0.72 16 27 C -0.09 -1.06 3.17 -89.27 -0.28 -1.34 16 28 H 0.07 0.78 7.85 -51.93 -0.41 0.37 16 29 C -0.14 -1.45 8.89 37.16 0.33 -1.12 16 30 H 0.22 0.89 7.80 -54.10 -0.42 0.47 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 34 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.40 2.13 8.33 -40.82 -0.34 1.79 16 38 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.04 0.49 7.89 -51.93 -0.41 0.08 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.80 7.73 -51.92 -0.40 0.40 16 43 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 44 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 45 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.04 0.63 7.52 -51.93 -0.39 0.24 16 47 H 0.09 1.69 7.07 -51.93 -0.37 1.33 16 48 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 LS Contribution 416.71 15.07 6.28 6.28 Total: -1.00 -34.62 416.71 -8.88 -43.50 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -8.47 Total: 8.55 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -1.04 Total: 1.26 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: -0.80 Total: -52.99 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: 0.17 Total: -22.59 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -34.62 -8.88 -43.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101922114.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.052 kcal (2) G-P(sol) polarization free energy of solvation -34.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds