Wall clock time and date at job start Tue Mar 31 2020 18:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47172 * 348.84184 * 3 2 1 5 5 C 1.53006 * 109.47127 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47126 * 180.02562 * 5 4 3 7 7 O 1.21279 * 119.99926 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99773 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99531 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46883 * 179.97438 * 9 8 6 11 11 H 1.08999 * 110.64086 * 56.69995 * 10 9 8 12 12 C 1.54941 * 110.72298 * 293.55006 * 10 9 8 13 13 N 1.48536 * 103.22265 * 204.22290 * 12 10 9 14 14 C 1.46901 * 110.99796 * 159.71956 * 13 12 10 15 15 C 1.50698 * 109.47347 * 170.00202 * 14 13 12 16 16 O 1.21298 * 119.99634 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00480 * 179.97438 * 15 14 13 18 18 C 1.37091 * 120.00076 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00394 * 0.02562 * 18 17 15 20 20 C 1.38953 * 119.99632 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99977 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99926 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47179 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47398 * 120.00088 * 22 20 18 25 25 H 1.48508 * 109.46788 * 239.99973 * 22 20 18 26 26 C 1.47903 * 105.81739 * 39.21027 * 13 12 10 27 27 C 1.53990 * 107.06057 * 334.66547 * 26 13 12 28 28 H 1.09001 * 110.30803 * 120.14595 * 27 26 13 29 29 C 1.53000 * 110.31004 * 242.30960 * 27 26 13 30 30 H 4.44645 * 5.63342 * 180.02562 * 4 1 2 31 31 H 1.09001 * 109.47041 * 228.84558 * 3 2 1 32 32 H 1.08996 * 109.47367 * 108.84157 * 3 2 1 33 33 H 1.09001 * 109.47289 * 59.99972 * 4 3 2 34 34 H 1.08996 * 109.47853 * 300.00084 * 4 3 2 35 35 H 1.08998 * 109.46509 * 60.00429 * 5 4 3 36 36 H 1.08993 * 109.46955 * 299.99989 * 5 4 3 37 37 H 0.96992 * 120.00503 * 359.97438 * 8 6 5 38 38 H 1.09001 * 109.46891 * 60.00097 * 9 8 6 39 39 H 1.08993 * 109.47378 * 299.99469 * 9 8 6 40 40 H 1.09000 * 110.66681 * 322.65960 * 12 10 9 41 41 H 1.09002 * 110.66669 * 85.79424 * 12 10 9 42 42 H 1.09008 * 109.47114 * 290.00589 * 14 13 12 43 43 H 1.09000 * 109.46757 * 50.00488 * 14 13 12 44 44 H 0.97008 * 119.99407 * 0.02562 * 17 15 14 45 45 H 0.97005 * 119.99884 * 180.02562 * 21 20 18 46 46 H 1.09005 * 109.91864 * 94.02357 * 26 13 12 47 47 H 1.09002 * 109.91524 * 215.30828 * 26 13 12 48 48 H 1.08998 * 109.47289 * 175.71444 * 29 27 26 49 49 H 1.09000 * 109.47251 * 295.71560 * 29 27 26 50 50 H 1.09007 * 109.47217 * 55.71577 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4143 0.2791 5 6 4.6867 -1.4137 0.2785 6 6 5.1897 -2.8076 0.5528 7 8 4.4020 -3.7123 0.7317 8 7 6.5148 -3.0486 0.6004 9 6 7.0037 -4.4036 0.8676 10 6 8.5338 -4.4030 0.8669 11 1 8.9181 -3.6884 1.5946 12 6 9.0813 -4.0920 -0.5489 13 7 10.4351 -4.7029 -0.5314 14 6 10.9239 -4.9386 -1.8965 15 6 12.3798 -5.3246 -1.8491 16 8 12.9537 -5.3968 -0.7829 17 7 13.0441 -5.5906 -2.9912 18 6 14.3687 -5.9412 -2.9481 19 1 14.8798 -6.0047 -1.9989 20 6 15.0535 -6.2150 -4.1257 21 7 14.4314 -6.1382 -5.2807 22 14 16.8583 -6.6935 -4.0669 23 1 17.3208 -6.7083 -2.6559 24 1 17.0319 -8.0440 -4.6595 25 1 17.6571 -5.7078 -4.8389 26 6 10.2934 -5.9760 0.2080 27 6 9.0815 -5.8216 1.1454 28 1 8.3254 -6.5715 0.9130 29 6 9.5209 -5.9438 2.6059 30 1 -1.0498 -0.0004 -0.0001 31 1 3.0090 0.6771 0.7738 32 1 3.0092 0.3327 -0.9725 33 1 2.7936 -2.0909 -0.4946 34 1 2.7935 -1.7465 1.2517 35 1 5.0500 -0.7372 1.0520 36 1 5.0494 -1.0819 -0.6942 37 1 7.1448 -2.3251 0.4577 38 1 6.6406 -5.0800 0.0939 39 1 6.6407 -4.7356 1.8402 40 1 8.4588 -4.5578 -1.3129 41 1 9.1470 -3.0157 -0.7080 42 1 10.3492 -5.7438 -2.3543 43 1 10.8082 -4.0290 -2.4858 44 1 12.5850 -5.5332 -3.8439 45 1 14.9094 -6.3296 -6.1028 46 1 10.1201 -6.7942 -0.4911 47 1 11.1931 -6.1680 0.7926 48 1 8.6682 -5.7571 3.2587 49 1 9.9042 -6.9480 2.7871 50 1 10.3033 -5.2135 2.8123 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101922114.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:27 Heat of formation + Delta-G solvation = -60.362161 kcal Electronic energy + Delta-G solvation = -27822.930487 eV Core-core repulsion = 23849.692348 eV Total energy + Delta-G solvation = -3973.238139 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.08843 -40.46540 -39.43040 -36.60641 -36.11475 -35.73364 -34.24727 -33.24517 -33.18349 -31.31698 -29.40974 -28.59154 -27.02141 -26.57267 -24.60073 -23.22590 -21.92306 -21.58415 -21.11660 -20.51012 -19.82310 -19.08806 -17.82987 -17.69687 -17.34931 -16.95083 -16.56233 -16.55425 -16.27452 -15.81918 -15.57682 -15.40374 -15.05990 -14.89062 -14.64791 -14.46776 -14.42474 -13.80023 -13.69478 -13.54655 -13.50472 -13.42759 -13.22869 -12.96344 -12.80543 -12.49530 -12.42630 -12.37958 -12.23245 -12.09965 -11.89620 -11.75606 -11.64172 -11.54504 -11.48113 -11.15646 -10.95065 -10.79688 -10.31679 -10.03833 -9.99579 -9.29022 -8.46007 -5.94408 1.36577 1.41700 1.55797 1.72613 1.86504 1.94122 2.07208 2.28925 2.29841 2.81938 3.20656 3.38254 3.54586 3.56553 3.64319 3.83318 3.89295 4.12650 4.17612 4.21770 4.28340 4.32295 4.40749 4.42367 4.52901 4.55947 4.60715 4.65630 4.68869 4.72708 4.75326 4.83628 4.85669 4.89553 5.04740 5.13396 5.19222 5.23397 5.23709 5.26030 5.35196 5.41732 5.43588 5.52598 5.87650 5.99961 6.11630 6.62005 6.63081 6.73825 7.14413 7.33720 7.57988 8.14266 8.71711 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018511 B = 0.001714 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.232358 B =16331.505486 C =17504.099891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.216 4.216 3 C -0.012 4.012 4 C -0.095 4.095 5 C -0.133 4.133 6 C 0.506 3.494 7 O -0.593 6.593 8 N -0.718 5.718 9 C 0.138 3.862 10 C -0.083 4.083 11 H 0.100 0.900 12 C 0.039 3.961 13 N -0.511 5.511 14 C 0.049 3.951 15 C 0.441 3.559 16 O -0.615 6.615 17 N -0.576 5.576 18 C -0.331 4.331 19 H 0.078 0.922 20 C -0.013 4.013 21 N -0.921 5.921 22 Si 0.992 3.008 23 H -0.274 1.274 24 H -0.272 1.272 25 H -0.270 1.270 26 C 0.048 3.952 27 C -0.089 4.089 28 H 0.086 0.914 29 C -0.137 4.137 30 H 0.238 0.762 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.417 0.583 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.101 0.899 42 H 0.065 0.935 43 H 0.112 0.888 44 H 0.395 0.605 45 H 0.277 0.723 46 H 0.029 0.971 47 H 0.058 0.942 48 H 0.073 0.927 49 H 0.053 0.947 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.534 11.912 9.660 27.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.216 4.216 3 C -0.048 4.048 4 C -0.133 4.133 5 C -0.172 4.172 6 C 0.294 3.706 7 O -0.474 6.474 8 N -0.371 5.371 9 C 0.014 3.986 10 C -0.102 4.102 11 H 0.119 0.881 12 C -0.088 4.088 13 N -0.235 5.235 14 C -0.082 4.082 15 C 0.229 3.771 16 O -0.501 6.501 17 N -0.214 5.214 18 C -0.461 4.461 19 H 0.096 0.904 20 C -0.212 4.212 21 N -0.563 5.563 22 Si 0.815 3.185 23 H -0.198 1.198 24 H -0.197 1.197 25 H -0.196 1.196 26 C -0.080 4.080 27 C -0.108 4.108 28 H 0.104 0.896 29 C -0.194 4.194 30 H 0.254 0.746 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.254 0.746 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.119 0.881 42 H 0.083 0.917 43 H 0.130 0.870 44 H 0.229 0.771 45 H 0.086 0.914 46 H 0.047 0.953 47 H 0.076 0.924 48 H 0.092 0.908 49 H 0.072 0.928 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -22.221 11.526 10.546 27.163 hybrid contribution 0.398 -0.935 -1.199 1.572 sum -21.824 10.590 9.347 25.996 Atomic orbital electron populations 1.25707 0.97156 1.00259 1.01024 1.23896 0.95939 1.00993 1.00731 1.18875 0.83587 0.97442 1.04882 1.21173 0.94212 0.95884 1.02047 1.21717 0.96003 0.92565 1.06901 1.21368 0.81967 0.92035 0.75192 1.90707 1.56605 1.48529 1.51584 1.45964 1.07167 1.11589 1.72351 1.21204 0.92097 0.84168 1.01171 1.22270 0.93124 0.97523 0.97309 0.88137 1.23444 0.87555 1.01194 0.96649 1.64387 1.23984 1.22646 1.12503 1.21929 0.91831 1.02483 0.91986 1.20807 0.90052 0.82413 0.83857 1.90484 1.70833 1.58025 1.30729 1.41940 1.10468 1.61155 1.07857 1.19681 0.87098 1.44898 0.94404 0.90424 1.26009 1.04281 0.96933 0.94000 1.69679 1.38874 1.49521 0.98185 0.84890 0.77124 0.78196 0.78245 1.19826 1.19698 1.19562 1.22886 0.98446 0.90336 0.96380 1.21955 0.95802 0.97041 0.96027 0.89599 1.21783 1.01541 1.01816 0.94296 0.74595 0.87485 0.87657 0.93031 0.92823 0.85581 0.85800 0.74560 0.92525 0.91521 0.93042 0.88101 0.91707 0.87038 0.77104 0.91368 0.95263 0.92397 0.90836 0.92822 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.18 19.25 74.32 1.43 -1.74 16 2 C -0.22 -3.27 13.34 31.12 0.42 -2.86 16 3 C -0.01 -0.11 5.70 28.79 0.16 0.06 16 4 C -0.09 -1.18 4.46 30.60 0.14 -1.05 16 5 C -0.13 -1.02 5.70 29.85 0.17 -0.85 16 6 C 0.51 8.18 7.83 87.66 0.69 8.87 16 7 O -0.59 -15.72 15.98 -3.03 -0.05 -15.77 16 8 N -0.72 -8.95 5.40 -463.05 -2.50 -11.46 16 9 C 0.14 2.21 4.99 86.38 0.43 2.64 16 10 C -0.08 -1.42 2.67 -9.59 -0.03 -1.45 16 11 H 0.10 1.63 7.87 -2.39 -0.02 1.61 16 12 C 0.04 0.78 5.66 86.65 0.49 1.27 16 13 N -0.51 -15.73 4.91 -887.53 -4.36 -20.09 16 14 C 0.05 1.68 5.27 85.56 0.45 2.14 16 15 C 0.44 21.08 7.61 87.66 0.67 21.75 16 16 O -0.62 -34.17 14.87 -3.08 -0.05 -34.21 16 17 N -0.58 -29.70 5.29 -306.99 -1.62 -31.32 16 18 C -0.33 -18.90 9.68 84.04 0.81 -18.08 16 19 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 20 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 21 N -0.92 -49.76 13.05 21.66 0.28 -49.48 16 22 Si 0.99 43.04 29.55 68.60 2.03 45.07 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 C 0.05 1.46 5.53 86.44 0.48 1.94 16 27 C -0.09 -1.89 3.17 -9.92 -0.03 -1.92 16 28 H 0.09 1.67 7.85 -2.39 -0.02 1.65 16 29 C -0.14 -2.71 8.89 71.98 0.64 -2.07 16 30 H 0.24 1.74 7.80 -4.43 -0.03 1.71 16 31 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 34 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 35 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.42 2.80 8.33 -92.71 -0.77 2.03 16 38 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 40 H 0.05 1.00 7.89 -2.39 -0.02 0.98 16 41 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.07 2.03 7.73 -2.38 -0.02 2.01 16 43 H 0.11 3.28 8.08 -2.39 -0.02 3.26 16 44 H 0.40 19.33 7.90 -92.70 -0.73 18.59 16 45 H 0.28 13.96 8.31 -92.70 -0.77 13.19 16 46 H 0.03 0.93 7.52 -2.38 -0.02 0.92 16 47 H 0.06 2.19 7.07 -2.39 -0.02 2.17 16 48 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -78.42 416.71 0.55 -77.87 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: -0.57 Total: 30.96 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 7.38 Total: 8.42 kcal Atomic # 7 Polarization: -104.14 SS G_CDS: -8.20 Total: -112.34 kcal Atomic # 8 Polarization: -49.89 SS G_CDS: -0.09 Total: -49.99 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -78.42 0.55 -77.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101922114.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.511 kcal (2) G-P(sol) polarization free energy of solvation -78.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds