Wall clock time and date at job start Tue Mar 31 2020 18:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46872 * 2 1 4 4 C 1.50697 * 109.47441 * 119.99801 * 2 1 3 5 5 O 1.33483 * 126.83326 * 300.00335 * 4 2 1 6 6 N 1.20660 * 113.16005 * 179.97438 * 5 4 2 7 7 C 1.30008 * 112.29894 * 359.73214 * 6 5 4 8 8 C 1.37364 * 126.82728 * 119.99853 * 4 2 1 9 9 C 1.47403 * 128.56336 * 359.96744 * 8 4 2 10 10 O 1.21608 * 120.00133 * 359.97438 * 9 8 4 11 11 N 1.34776 * 119.99675 * 179.97438 * 9 8 4 12 12 C 1.46508 * 119.99579 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.46707 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.47125 * 179.97438 * 13 12 11 15 15 H 1.09000 * 110.63496 * 51.85936 * 14 13 12 16 16 C 1.54335 * 111.00070 * 288.78390 * 14 13 12 17 17 N 1.47022 * 107.26195 * 219.59791 * 16 14 13 18 18 C 1.36935 * 125.64427 * 178.84992 * 17 16 14 19 19 H 1.08000 * 120.00518 * 359.44761 * 18 17 16 20 20 C 1.38817 * 119.99990 * 179.71412 * 18 17 16 21 21 N 1.31617 * 119.99869 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99909 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47028 * 60.00888 * 22 20 18 24 24 H 1.48503 * 109.46851 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47412 * 300.00497 * 22 20 18 26 26 C 1.47426 * 108.70625 * 358.58545 * 17 16 14 27 27 C 1.54912 * 104.82994 * 24.35934 * 26 17 16 28 28 H 1.08995 * 111.00742 * 81.05954 * 27 26 17 29 29 C 1.52998 * 111.00086 * 204.87731 * 27 26 17 30 30 H 1.09000 * 109.46841 * 299.99951 * 1 2 3 31 31 H 1.08997 * 109.47343 * 59.99874 * 1 2 3 32 32 H 1.08991 * 109.46696 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47251 * 240.00705 * 2 1 3 34 34 H 1.09000 * 109.47347 * 60.00359 * 3 2 1 35 35 H 1.09001 * 109.46680 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.47239 * 300.00189 * 3 2 1 37 37 H 1.08007 * 127.33638 * 180.26911 * 7 6 5 38 38 H 0.96996 * 120.00291 * 0.02562 * 11 9 8 39 39 H 1.09000 * 109.46669 * 60.00382 * 12 11 9 40 40 H 1.08993 * 109.46871 * 299.99995 * 12 11 9 41 41 H 1.09009 * 109.47210 * 60.00549 * 13 12 11 42 42 H 1.09003 * 109.47538 * 300.00244 * 13 12 11 43 43 H 1.09007 * 109.99076 * 100.12594 * 16 14 13 44 44 H 1.09002 * 109.78210 * 338.95588 * 16 14 13 45 45 H 0.96996 * 119.99743 * 179.97438 * 21 20 18 46 46 H 1.08998 * 110.36404 * 143.19245 * 26 17 16 47 47 H 1.08995 * 110.36566 * 265.51629 * 26 17 16 48 48 H 1.08996 * 109.47303 * 58.54471 * 29 27 26 49 49 H 1.09006 * 109.46537 * 178.54319 * 29 27 26 50 50 H 1.08996 * 109.47165 * 298.54472 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 1.7955 -0.3753 2.5006 6 7 2.3204 -1.1184 3.2932 7 6 2.9865 -2.0706 2.7103 8 6 2.8252 -1.8315 1.2679 9 6 3.3731 -2.6076 0.1408 10 8 3.1334 -2.2707 -1.0028 11 7 4.1396 -3.6905 0.3779 12 6 4.6837 -4.4621 -0.7424 13 6 5.5116 -5.6300 -0.2026 14 6 6.0794 -6.4363 -1.3725 15 1 6.5978 -5.7826 -2.0739 16 6 4.9657 -7.2267 -2.0916 17 7 5.5205 -8.5427 -2.4407 18 6 4.8436 -9.5523 -3.0713 19 1 3.8082 -9.4180 -3.3476 20 6 5.4866 -10.7504 -3.3505 21 7 6.7467 -10.9162 -3.0087 22 14 4.5629 -12.1279 -4.2101 23 1 4.0925 -11.6556 -5.5371 24 1 5.4666 -13.2924 -4.3906 25 1 3.3955 -12.5309 -3.3857 26 6 6.9281 -8.5931 -2.0052 27 6 7.0264 -7.5537 -0.8607 28 1 6.6654 -7.9718 0.0789 29 6 8.4582 -7.0351 -0.7126 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3632 -1.0276 0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 3.5421 -2.8664 3.1842 38 1 4.3305 -3.9593 1.2900 39 1 5.3179 -3.8190 -1.3525 40 1 3.8648 -4.8470 -1.3501 41 1 4.8777 -6.2733 0.4078 42 1 6.3306 -5.2447 0.4049 43 1 4.6606 -6.7011 -2.9965 44 1 4.1115 -7.3493 -1.4257 45 1 7.1959 -11.7535 -3.2035 46 1 7.1755 -9.5883 -1.6360 47 1 7.5893 -8.3169 -2.8264 48 1 8.7802 -6.5841 -1.6512 49 1 8.4937 -6.2881 0.0805 50 1 9.1206 -7.8635 -0.4615 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103601560.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:12 Heat of formation + Delta-G solvation = 26.294723 kcal Electronic energy + Delta-G solvation = -28730.864230 eV Core-core repulsion = 24761.383815 eV Total energy + Delta-G solvation = -3969.480415 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.26952 -39.79121 -38.17412 -36.42575 -35.27027 -34.09727 -33.22667 -31.45363 -30.91993 -30.65121 -27.60254 -27.17634 -25.78973 -25.02732 -24.13134 -23.46657 -22.07406 -21.23906 -20.61160 -19.67652 -19.26727 -18.05292 -18.02874 -16.85349 -16.69108 -16.05501 -15.71826 -15.41183 -15.04710 -14.86229 -14.38367 -14.14288 -13.88746 -13.74178 -13.63507 -13.53691 -12.99804 -12.83009 -12.62997 -12.25567 -12.06829 -12.04692 -11.86024 -11.71334 -11.68481 -11.49925 -11.21880 -11.13393 -11.04568 -10.85947 -10.76802 -10.73644 -10.28974 -10.11267 -9.90342 -9.83694 -9.81774 -9.71538 -9.33451 -9.20171 -8.63003 -6.80399 -5.63303 -3.04744 0.74065 1.44329 2.41984 2.96713 2.99163 3.41407 3.45513 3.46815 3.85399 3.91014 4.19703 4.45949 4.50501 4.62372 4.72621 4.86483 4.93997 5.06566 5.18252 5.20897 5.26151 5.38335 5.40133 5.43258 5.45890 5.52316 5.54851 5.62335 5.64915 5.74627 5.79002 5.86225 5.92102 5.96479 6.11883 6.21428 6.25527 6.28901 6.33417 6.55564 6.61709 6.69245 6.83057 7.01883 7.24644 7.56588 7.65186 7.80398 7.88552 7.95228 8.38869 9.24629 9.85628 10.51019 11.40345 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017729 B = 0.002079 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.973358 B =13464.689930 C =14211.673057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.030 4.030 3 C -0.148 4.148 4 C 0.060 3.940 5 O 0.093 5.907 6 N -0.355 5.355 7 C 0.022 3.978 8 C -0.264 4.264 9 C 0.596 3.404 10 O -0.533 6.533 11 N -0.718 5.718 12 C 0.119 3.881 13 C -0.117 4.117 14 C -0.092 4.092 15 H 0.073 0.927 16 C 0.140 3.860 17 N -0.606 5.606 18 C -0.221 4.221 19 H 0.076 0.924 20 C -0.012 4.012 21 N -0.923 5.923 22 Si 0.914 3.086 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.158 3.842 27 C -0.115 4.115 28 H 0.068 0.932 29 C -0.133 4.133 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.130 0.870 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.201 0.799 38 H 0.400 0.600 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.020 0.980 44 H 0.022 0.978 45 H 0.252 0.748 46 H 0.105 0.895 47 H 0.011 0.989 48 H 0.050 0.950 49 H 0.042 0.958 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.907 22.318 11.112 25.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.049 4.049 3 C -0.205 4.205 4 C -0.004 4.004 5 O 0.034 5.966 6 N -0.060 5.060 7 C -0.161 4.161 8 C -0.272 4.272 9 C 0.383 3.617 10 O -0.411 6.411 11 N -0.368 5.368 12 C -0.004 4.004 13 C -0.155 4.155 14 C -0.112 4.112 15 H 0.091 0.909 16 C 0.014 3.986 17 N -0.331 5.331 18 C -0.350 4.350 19 H 0.094 0.906 20 C -0.208 4.208 21 N -0.572 5.572 22 Si 0.744 3.256 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.034 3.966 27 C -0.134 4.134 28 H 0.086 0.914 29 C -0.191 4.191 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.148 0.852 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.218 0.782 38 H 0.234 0.766 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.037 0.963 44 H 0.040 0.960 45 H 0.063 0.937 46 H 0.122 0.878 47 H 0.029 0.971 48 H 0.069 0.931 49 H 0.061 0.939 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.284 22.666 11.461 26.165 hybrid contribution 0.007 -1.380 -0.551 1.486 sum -6.277 21.286 10.909 24.729 Atomic orbital electron populations 1.21872 0.92716 1.02901 1.03068 1.20287 0.97025 0.96490 0.91137 1.21872 1.01722 0.93844 1.03074 1.24945 0.94135 0.93937 0.87429 1.84560 1.55568 1.43877 1.12609 1.73675 1.11740 1.04437 1.16126 1.26394 1.00283 0.99249 0.90155 1.22135 1.09301 1.01496 0.94229 1.16766 0.78210 0.80006 0.86762 1.90775 1.59602 1.68951 1.21749 1.45856 1.51662 1.28446 1.10858 1.21573 0.98094 0.92493 0.88243 1.21798 0.98991 0.95793 0.98911 1.22146 0.97310 0.96030 0.95692 0.90897 1.21373 0.94098 0.87303 0.95875 1.44497 1.09204 1.10413 1.69018 1.19041 0.94539 0.91639 1.29774 0.90617 1.24783 0.96243 0.98107 1.01632 1.69791 1.09797 1.25268 1.52323 0.86159 0.78476 0.81538 0.79383 1.21223 1.21589 1.21207 1.21969 0.84890 0.98465 0.91326 1.22629 0.93525 0.96664 1.00618 0.91395 1.21634 0.96724 1.00126 1.00609 0.91900 0.90827 0.91993 0.85204 0.91894 0.92070 0.90848 0.78195 0.76623 0.91160 0.90655 0.91136 0.91510 0.96260 0.96021 0.93739 0.87762 0.97070 0.93071 0.93883 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.18 37.16 0.34 -0.63 16 2 C -0.03 -0.24 3.29 -91.77 -0.30 -0.54 16 3 C -0.15 -0.93 9.18 37.16 0.34 -0.59 16 4 C 0.06 0.58 6.06 -34.63 -0.21 0.37 16 5 O 0.09 0.93 11.06 18.67 0.21 1.13 16 6 N -0.35 -3.66 12.01 31.80 0.38 -3.28 16 7 C 0.02 0.19 11.95 -14.73 -0.18 0.01 16 8 C -0.26 -2.68 6.47 -102.89 -0.67 -3.35 16 9 C 0.60 7.07 7.81 -12.53 -0.10 6.97 16 10 O -0.53 -7.88 14.86 5.27 0.08 -7.80 16 11 N -0.72 -7.28 5.55 -61.39 -0.34 -7.62 16 12 C 0.12 1.41 5.56 -4.04 -0.02 1.39 16 13 C -0.12 -1.41 4.74 -26.73 -0.13 -1.54 16 14 C -0.09 -1.49 2.38 -88.77 -0.21 -1.71 16 15 H 0.07 1.16 8.02 -51.93 -0.42 0.75 16 16 C 0.14 2.86 6.25 -3.06 -0.02 2.84 16 17 N -0.61 -15.53 3.39 -170.06 -0.58 -16.10 16 18 C -0.22 -6.22 10.27 -15.06 -0.15 -6.37 16 19 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 20 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 21 N -0.92 -26.94 10.09 55.49 0.56 -26.38 16 22 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 C 0.16 3.79 5.36 -2.53 -0.01 3.78 16 27 C -0.11 -2.05 3.09 -88.47 -0.27 -2.33 16 28 H 0.07 1.22 8.05 -51.93 -0.42 0.80 16 29 C -0.13 -1.98 9.30 37.16 0.35 -1.64 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.13 1.28 5.89 -51.93 -0.31 0.98 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.20 1.01 7.88 -52.48 -0.41 0.60 16 38 H 0.40 2.92 7.84 -40.82 -0.32 2.60 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.08 1.03 7.69 -51.93 -0.40 0.63 16 41 H 0.07 0.86 7.95 -51.92 -0.41 0.45 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.02 0.41 8.14 -51.92 -0.42 -0.02 16 44 H 0.02 0.44 7.70 -51.93 -0.40 0.04 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.10 2.83 5.87 -51.93 -0.31 2.52 16 47 H 0.01 0.29 8.04 -51.93 -0.42 -0.13 16 48 H 0.05 0.76 8.11 -51.93 -0.42 0.34 16 49 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 402.93 15.07 6.07 6.07 Total: -1.00 -32.70 402.93 -8.41 -41.10 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -8.42 Total: -0.51 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -1.34 Total: -3.79 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 0.02 Total: -53.37 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: 0.28 Total: -6.66 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.70 -8.41 -41.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103601560.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.400 kcal (2) G-P(sol) polarization free energy of solvation -32.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds