Wall clock time and date at job start Tue Mar 31 2020 18:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46872 * 2 1 4 4 C 1.50697 * 109.47441 * 119.99801 * 2 1 3 5 5 O 1.33483 * 126.83326 * 300.00335 * 4 2 1 6 6 N 1.20660 * 113.16005 * 179.97438 * 5 4 2 7 7 C 1.30008 * 112.29894 * 359.73214 * 6 5 4 8 8 C 1.37364 * 126.82728 * 119.99853 * 4 2 1 9 9 C 1.47403 * 128.56336 * 359.96744 * 8 4 2 10 10 O 1.21608 * 120.00133 * 359.97438 * 9 8 4 11 11 N 1.34776 * 119.99675 * 179.97438 * 9 8 4 12 12 C 1.46508 * 119.99579 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.46707 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.47125 * 179.97438 * 13 12 11 15 15 H 1.09000 * 110.63496 * 51.85936 * 14 13 12 16 16 C 1.54335 * 111.00070 * 288.78390 * 14 13 12 17 17 N 1.47022 * 107.26195 * 219.59791 * 16 14 13 18 18 C 1.36935 * 125.64427 * 178.84992 * 17 16 14 19 19 H 1.08000 * 120.00518 * 359.44761 * 18 17 16 20 20 C 1.38817 * 119.99990 * 179.71412 * 18 17 16 21 21 N 1.31617 * 119.99869 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99909 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47028 * 60.00888 * 22 20 18 24 24 H 1.48503 * 109.46851 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47412 * 300.00497 * 22 20 18 26 26 C 1.47426 * 108.70625 * 358.58545 * 17 16 14 27 27 C 1.54912 * 104.82994 * 24.35934 * 26 17 16 28 28 H 1.08995 * 111.00742 * 81.05954 * 27 26 17 29 29 C 1.52998 * 111.00086 * 204.87731 * 27 26 17 30 30 H 1.09000 * 109.46841 * 299.99951 * 1 2 3 31 31 H 1.08997 * 109.47343 * 59.99874 * 1 2 3 32 32 H 1.08991 * 109.46696 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47251 * 240.00705 * 2 1 3 34 34 H 1.09000 * 109.47347 * 60.00359 * 3 2 1 35 35 H 1.09001 * 109.46680 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.47239 * 300.00189 * 3 2 1 37 37 H 1.08007 * 127.33638 * 180.26911 * 7 6 5 38 38 H 0.96996 * 120.00291 * 0.02562 * 11 9 8 39 39 H 1.09000 * 109.46669 * 60.00382 * 12 11 9 40 40 H 1.08993 * 109.46871 * 299.99995 * 12 11 9 41 41 H 1.09009 * 109.47210 * 60.00549 * 13 12 11 42 42 H 1.09003 * 109.47538 * 300.00244 * 13 12 11 43 43 H 1.09007 * 109.99076 * 100.12594 * 16 14 13 44 44 H 1.09002 * 109.78210 * 338.95588 * 16 14 13 45 45 H 0.96996 * 119.99743 * 179.97438 * 21 20 18 46 46 H 1.08998 * 110.36404 * 143.19245 * 26 17 16 47 47 H 1.08995 * 110.36566 * 265.51629 * 26 17 16 48 48 H 1.08996 * 109.47303 * 58.54471 * 29 27 26 49 49 H 1.09006 * 109.46537 * 178.54319 * 29 27 26 50 50 H 1.08996 * 109.47165 * 298.54472 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 1.7955 -0.3753 2.5006 6 7 2.3204 -1.1184 3.2932 7 6 2.9865 -2.0706 2.7103 8 6 2.8252 -1.8315 1.2679 9 6 3.3731 -2.6076 0.1408 10 8 3.1334 -2.2707 -1.0028 11 7 4.1396 -3.6905 0.3779 12 6 4.6837 -4.4621 -0.7424 13 6 5.5116 -5.6300 -0.2026 14 6 6.0794 -6.4363 -1.3725 15 1 6.5978 -5.7826 -2.0739 16 6 4.9657 -7.2267 -2.0916 17 7 5.5205 -8.5427 -2.4407 18 6 4.8436 -9.5523 -3.0713 19 1 3.8082 -9.4180 -3.3476 20 6 5.4866 -10.7504 -3.3505 21 7 6.7467 -10.9162 -3.0087 22 14 4.5629 -12.1279 -4.2101 23 1 4.0925 -11.6556 -5.5371 24 1 5.4666 -13.2924 -4.3906 25 1 3.3955 -12.5309 -3.3857 26 6 6.9281 -8.5931 -2.0052 27 6 7.0264 -7.5537 -0.8607 28 1 6.6654 -7.9718 0.0789 29 6 8.4582 -7.0351 -0.7126 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3632 -1.0276 0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 3.5421 -2.8664 3.1842 38 1 4.3305 -3.9593 1.2900 39 1 5.3179 -3.8190 -1.3525 40 1 3.8648 -4.8470 -1.3501 41 1 4.8777 -6.2733 0.4078 42 1 6.3306 -5.2447 0.4049 43 1 4.6606 -6.7011 -2.9965 44 1 4.1115 -7.3493 -1.4257 45 1 7.1959 -11.7535 -3.2035 46 1 7.1755 -9.5883 -1.6360 47 1 7.5893 -8.3169 -2.8264 48 1 8.7802 -6.5841 -1.6512 49 1 8.4937 -6.2881 0.0805 50 1 9.1206 -7.8635 -0.4615 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103601560.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:11 Heat of formation + Delta-G solvation = 6.475516 kcal Electronic energy + Delta-G solvation = -28731.723655 eV Core-core repulsion = 24761.383815 eV Total energy + Delta-G solvation = -3970.339840 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.98357 -40.74304 -39.69099 -37.10200 -36.36874 -35.10614 -34.69669 -32.55460 -32.48225 -31.77176 -28.62525 -28.11031 -27.49806 -26.18556 -25.21496 -24.38751 -23.36031 -22.04399 -21.58562 -21.15466 -20.63779 -18.90968 -18.82384 -18.75459 -17.39994 -17.15401 -16.94028 -16.52568 -16.12322 -15.93702 -15.69296 -15.44917 -14.94831 -14.77000 -14.57978 -14.53547 -14.18151 -14.14759 -13.69149 -13.48562 -13.34811 -13.09058 -12.91231 -12.83948 -12.74573 -12.72284 -12.42096 -12.39666 -12.26833 -12.18932 -11.97519 -11.87018 -11.76242 -11.49258 -11.41561 -11.26694 -11.18741 -10.92063 -10.72464 -10.59815 -10.09983 -8.86407 -7.76630 -5.21030 -0.02362 0.75159 1.44941 1.48142 1.54560 1.66809 2.10353 2.16339 2.49450 3.21243 3.23975 3.31755 3.47189 3.72025 3.75246 3.85803 3.93403 4.06312 4.06480 4.08872 4.22378 4.32611 4.37198 4.53520 4.57693 4.65564 4.74473 4.75032 4.79467 4.81361 4.85432 4.87973 4.88731 5.03150 5.04564 5.10327 5.14033 5.20740 5.28166 5.28882 5.32317 5.40212 5.42841 5.47133 5.56890 5.78442 5.87125 6.33620 6.44447 7.08695 7.11736 7.12497 7.80888 8.44607 9.24357 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017729 B = 0.002079 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.973358 B =13464.689930 C =14211.673057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.032 4.032 3 C -0.144 4.144 4 C 0.064 3.936 5 O 0.086 5.914 6 N -0.376 5.376 7 C 0.039 3.961 8 C -0.283 4.283 9 C 0.596 3.404 10 O -0.569 6.569 11 N -0.704 5.704 12 C 0.126 3.874 13 C -0.101 4.101 14 C -0.078 4.078 15 H 0.078 0.922 16 C 0.133 3.867 17 N -0.630 5.630 18 C -0.241 4.241 19 H 0.076 0.924 20 C -0.068 4.068 21 N -0.948 5.948 22 Si 0.979 3.021 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.276 1.276 26 C 0.159 3.841 27 C -0.100 4.100 28 H 0.072 0.928 29 C -0.127 4.127 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.111 0.889 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.087 0.913 37 H 0.236 0.764 38 H 0.416 0.584 39 H 0.068 0.932 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.011 0.989 44 H 0.026 0.974 45 H 0.247 0.753 46 H 0.068 0.932 47 H -0.018 1.018 48 H 0.047 0.953 49 H 0.081 0.919 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.160 23.765 12.879 27.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.051 4.051 3 C -0.201 4.201 4 C -0.001 4.001 5 O 0.030 5.970 6 N -0.084 5.084 7 C -0.143 4.143 8 C -0.291 4.291 9 C 0.383 3.617 10 O -0.450 6.450 11 N -0.355 5.355 12 C 0.002 3.998 13 C -0.139 4.139 14 C -0.097 4.097 15 H 0.096 0.904 16 C 0.008 3.992 17 N -0.356 5.356 18 C -0.370 4.370 19 H 0.094 0.906 20 C -0.260 4.260 21 N -0.598 5.598 22 Si 0.807 3.193 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.202 1.202 26 C 0.034 3.966 27 C -0.120 4.120 28 H 0.090 0.910 29 C -0.184 4.184 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.128 0.872 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.253 0.747 38 H 0.254 0.746 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.118 0.882 43 H 0.029 0.971 44 H 0.044 0.956 45 H 0.056 0.944 46 H 0.086 0.914 47 H 0.000 1.000 48 H 0.066 0.934 49 H 0.100 0.900 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.552 24.147 13.262 28.317 hybrid contribution 0.060 -1.822 -1.139 2.149 sum -6.492 22.325 12.123 26.220 Atomic orbital electron populations 1.21868 0.91571 1.02536 1.04262 1.20325 0.97950 0.97140 0.89734 1.21864 1.01215 0.92795 1.04239 1.25279 0.93358 0.93716 0.87764 1.84554 1.55841 1.44068 1.12521 1.73668 1.12865 1.05295 1.16577 1.26920 0.99110 0.99128 0.89191 1.22067 1.10383 1.02007 0.94615 1.16967 0.77938 0.80145 0.86642 1.90763 1.60962 1.69982 1.23268 1.45650 1.50917 1.27621 1.11349 1.21349 0.97304 0.92531 0.88573 1.21645 0.99962 0.95099 0.97194 1.22047 0.95339 0.95461 0.96893 0.90397 1.21588 0.95796 0.85730 0.96067 1.44857 1.09972 1.11834 1.68938 1.19411 0.94940 0.92730 1.29924 0.90579 1.25628 0.97208 1.00434 1.02774 1.70062 1.11062 1.25386 1.53256 0.85145 0.77352 0.78385 0.78419 1.20646 1.21773 1.20224 1.21793 0.83792 0.98657 0.92396 1.22466 0.96196 0.95299 0.98038 0.90980 1.21597 0.94081 1.00876 1.01893 0.91009 0.89342 0.93114 0.87155 0.91039 0.92834 0.89377 0.74730 0.74630 0.91389 0.92875 0.90681 0.88205 0.97072 0.95581 0.94363 0.91404 1.00041 0.93355 0.89997 0.93198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.18 71.98 0.66 -1.11 16 2 C -0.03 -0.50 3.29 -11.54 -0.04 -0.54 16 3 C -0.14 -1.66 9.18 71.98 0.66 -1.00 16 4 C 0.06 1.16 6.06 25.48 0.15 1.32 16 5 O 0.09 1.61 11.06 77.07 0.85 2.46 16 6 N -0.38 -7.08 12.01 -54.21 -0.65 -7.73 16 7 C 0.04 0.58 11.95 87.29 1.04 1.62 16 8 C -0.28 -5.35 6.47 -18.74 -0.12 -5.47 16 9 C 0.60 13.39 7.81 86.66 0.68 14.07 16 10 O -0.57 -16.78 14.86 -4.05 -0.06 -16.84 16 11 N -0.70 -12.53 5.55 -466.39 -2.59 -15.12 16 12 C 0.13 2.74 5.56 86.38 0.48 3.22 16 13 C -0.10 -2.10 4.74 30.59 0.14 -1.95 16 14 C -0.08 -2.39 2.38 -9.60 -0.02 -2.41 16 15 H 0.08 2.34 8.02 -2.39 -0.02 2.32 16 16 C 0.13 5.46 6.25 86.73 0.54 6.01 16 17 N -0.63 -33.08 3.39 -691.95 -2.35 -35.43 16 18 C -0.24 -13.86 10.27 84.04 0.86 -12.99 16 19 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 20 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 21 N -0.95 -57.21 10.09 21.65 0.22 -56.99 16 22 Si 0.98 46.39 29.55 68.60 2.03 48.42 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 24 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 C 0.16 7.81 5.36 86.86 0.47 8.27 16 27 C -0.10 -3.46 3.09 -9.40 -0.03 -3.49 16 28 H 0.07 2.44 8.05 -2.39 -0.02 2.42 16 29 C -0.13 -3.46 9.30 71.98 0.67 -2.79 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.11 2.21 5.89 -2.39 -0.01 2.20 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.24 1.42 7.88 -2.91 -0.02 1.40 16 38 H 0.42 4.52 7.84 -92.71 -0.73 3.80 16 39 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.05 1.41 7.69 -2.39 -0.02 1.40 16 41 H 0.07 1.56 7.95 -2.38 -0.02 1.54 16 42 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 44 H 0.03 1.05 7.70 -2.39 -0.02 1.03 16 45 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 46 H 0.07 3.84 5.87 -2.39 -0.01 3.82 16 47 H -0.02 -0.99 8.04 -2.39 -0.02 -1.01 16 48 H 0.05 1.34 8.11 -2.39 -0.02 1.32 16 49 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 50 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -74.47 402.93 4.27 -70.20 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.20 Total: 11.75 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 6.62 Total: -0.71 kcal Atomic # 7 Polarization: -109.90 SS G_CDS: -5.37 Total: -115.27 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: 0.79 Total: -14.38 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -74.47 4.27 -70.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103601560.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.679 kcal (2) G-P(sol) polarization free energy of solvation -74.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds