Wall clock time and date at job start Tue Mar 31 2020 18:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47312 * 2 1 4 4 C 1.50699 * 109.47094 * 120.00103 * 2 1 3 5 5 O 1.34251 * 126.52660 * 300.16183 * 4 2 1 6 6 C 1.34050 * 108.22955 * 180.22744 * 5 4 2 7 7 N 1.29935 * 109.24044 * 359.76960 * 6 5 4 8 8 C 1.36061 * 108.47701 * 0.02562 * 7 6 5 9 9 C 1.47420 * 126.44850 * 179.97438 * 8 7 6 10 10 O 1.21613 * 120.00219 * 180.02562 * 9 8 7 11 11 N 1.34780 * 120.00244 * 0.02562 * 9 8 7 12 12 C 1.46497 * 120.00316 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.46857 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47006 * 179.97438 * 13 12 11 15 15 H 1.09005 * 110.63590 * 51.85907 * 14 13 12 16 16 C 1.54337 * 111.00569 * 288.78250 * 14 13 12 17 17 N 1.47015 * 107.26507 * 219.59972 * 16 14 13 18 18 C 1.36937 * 125.64768 * 178.84634 * 17 16 14 19 19 H 1.07996 * 119.99824 * 340.94235 * 18 17 16 20 20 C 1.38807 * 120.00250 * 161.21713 * 18 17 16 21 21 N 1.31620 * 120.00450 * 157.60272 * 20 18 17 22 22 Si 1.86801 * 119.99892 * 337.60961 * 20 18 17 23 23 H 1.48500 * 109.47209 * 84.53337 * 22 20 18 24 24 H 1.48506 * 109.47109 * 204.53340 * 22 20 18 25 25 H 1.48497 * 109.47176 * 324.53007 * 22 20 18 26 26 C 1.47427 * 108.70568 * 358.58089 * 17 16 14 27 27 C 1.54914 * 104.83009 * 24.35900 * 26 17 16 28 28 H 1.09007 * 111.00378 * 81.06227 * 27 26 17 29 29 C 1.52998 * 111.00145 * 204.87596 * 27 26 17 30 30 H 1.09004 * 109.46992 * 300.00085 * 1 2 3 31 31 H 1.09005 * 109.46750 * 59.99626 * 1 2 3 32 32 H 1.08996 * 109.47103 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46992 * 239.99915 * 2 1 3 34 34 H 1.08999 * 109.47428 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.46981 * 300.00445 * 3 2 1 36 36 H 1.09004 * 109.47161 * 60.00019 * 3 2 1 37 37 H 1.08002 * 125.38043 * 179.79947 * 6 5 4 38 38 H 0.97004 * 119.99395 * 359.97438 * 11 9 8 39 39 H 1.08994 * 109.46946 * 59.99649 * 12 11 9 40 40 H 1.09002 * 109.46746 * 299.99680 * 12 11 9 41 41 H 1.08994 * 109.47558 * 60.00110 * 13 12 11 42 42 H 1.09002 * 109.47253 * 299.99457 * 13 12 11 43 43 H 1.08994 * 109.98977 * 100.12069 * 16 14 13 44 44 H 1.08996 * 109.77507 * 338.95612 * 16 14 13 45 45 H 0.97000 * 120.00315 * 179.97438 * 21 20 18 46 46 H 1.08999 * 110.36487 * 143.19046 * 26 17 16 47 47 H 1.08995 * 110.37008 * 265.51818 * 26 17 16 48 48 H 1.08995 * 109.47287 * 58.54469 * 29 27 26 49 49 H 1.08999 * 109.47052 * 178.54557 * 29 27 26 50 50 H 1.08997 * 109.46887 * 298.54352 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.7877 -0.3697 2.5057 6 6 2.4154 -1.2466 3.3019 7 7 3.0365 -2.1217 2.5693 8 6 2.8183 -1.8210 1.2604 9 6 3.3395 -2.5568 0.0941 10 8 3.0700 -2.1824 -1.0312 11 7 4.1148 -3.6444 0.2748 12 6 4.6332 -4.3752 -0.8842 13 6 5.4775 -5.5579 -0.4053 14 6 6.0184 -6.3215 -1.6158 15 1 6.5175 -5.6423 -2.3069 16 6 4.8897 -7.0910 -2.3340 17 7 5.4394 -8.3921 -2.7416 18 6 4.7500 -9.3821 -3.3896 19 1 3.6702 -9.3869 -3.3746 20 6 5.4392 -10.3826 -4.0611 21 7 4.8556 -11.5381 -4.2990 22 14 7.1951 -10.0891 -4.6269 23 1 8.1300 -10.3780 -3.5098 24 1 7.5019 -10.9827 -5.7727 25 1 7.3494 -8.6735 -5.0480 26 6 6.8574 -8.4522 -2.3428 27 6 6.9811 -7.4522 -1.1661 28 1 6.6446 -7.9037 -0.2328 29 6 8.4146 -6.9336 -1.0356 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6768 1.9564 0.8900 37 1 2.4059 -1.2289 4.3818 38 1 4.3301 -3.9428 1.1723 39 1 5.2502 -3.7093 -1.4873 40 1 3.8006 -4.7422 -1.4844 41 1 4.8609 -6.2239 0.1980 42 1 6.3101 -5.1906 0.1946 43 1 4.5608 -6.5359 -3.2125 44 1 4.0526 -7.2394 -1.6519 45 1 5.3371 -12.2371 -4.7686 46 1 7.1168 -9.4586 -2.0142 47 1 7.4975 -8.1456 -3.1701 48 1 8.7120 -6.4496 -1.9658 49 1 8.4677 -6.2142 -0.2185 50 1 9.0853 -7.7677 -0.8294 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103619728.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:15 Heat of formation + Delta-G solvation = -9.030186 kcal Electronic energy + Delta-G solvation = -28832.976407 eV Core-core repulsion = 24861.964190 eV Total energy + Delta-G solvation = -3971.012218 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.83058 -39.71384 -38.47221 -36.19940 -35.27238 -35.12340 -33.26816 -31.47567 -31.06724 -30.03143 -27.60644 -27.53109 -25.89166 -24.97571 -23.76855 -23.50775 -21.88844 -21.07590 -20.62946 -20.31044 -19.49025 -18.33132 -17.15649 -16.85196 -16.59192 -16.04324 -15.69565 -15.41277 -15.21873 -15.01771 -14.89462 -14.13690 -14.05602 -13.83897 -13.58474 -13.42067 -13.12828 -12.93219 -12.80529 -12.63836 -12.37741 -12.15473 -11.87712 -11.74999 -11.67200 -11.54602 -11.51131 -11.41238 -11.27909 -11.09517 -10.91142 -10.82823 -10.48641 -10.17261 -10.09295 -9.87933 -9.72563 -9.39819 -9.37885 -9.08799 -8.62943 -6.97887 -5.90196 -3.19823 0.76927 1.70501 2.17650 2.96067 3.09074 3.37868 3.51171 3.54119 3.67786 4.10323 4.40354 4.59116 4.61815 4.63721 4.77408 4.84178 4.96999 4.99326 5.12336 5.13850 5.19315 5.29936 5.32705 5.37219 5.44838 5.45052 5.47467 5.57019 5.62243 5.70249 5.77981 5.78650 5.82732 5.88510 5.91537 6.00474 6.11567 6.14838 6.19172 6.29040 6.35671 6.45906 6.60670 6.71652 6.86845 6.87777 7.01869 7.39800 7.78076 7.99815 8.36329 8.89228 9.74150 10.24291 11.26186 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020181 B = 0.002138 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.076395 B =13093.711725 C =13618.264833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.032 4.032 3 C -0.146 4.146 4 C 0.055 3.945 5 O -0.197 6.197 6 C 0.172 3.828 7 N -0.463 5.463 8 C -0.077 4.077 9 C 0.601 3.399 10 O -0.534 6.534 11 N -0.709 5.709 12 C 0.117 3.883 13 C -0.117 4.117 14 C -0.094 4.094 15 H 0.077 0.923 16 C 0.139 3.861 17 N -0.610 5.610 18 C -0.240 4.240 19 H 0.091 0.909 20 C 0.020 3.980 21 N -0.910 5.910 22 Si 0.883 3.117 23 H -0.285 1.285 24 H -0.303 1.303 25 H -0.277 1.277 26 C 0.116 3.884 27 C -0.100 4.100 28 H 0.079 0.921 29 C -0.140 4.140 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.136 0.864 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.255 0.745 38 H 0.408 0.592 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.030 0.970 44 H 0.033 0.967 45 H 0.262 0.738 46 H 0.057 0.943 47 H 0.025 0.975 48 H 0.053 0.947 49 H 0.052 0.948 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.180 26.103 16.372 30.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.050 4.050 3 C -0.203 4.203 4 C -0.002 4.002 5 O -0.083 6.083 6 C -0.056 4.056 7 N -0.192 5.192 8 C -0.197 4.197 9 C 0.386 3.614 10 O -0.412 6.412 11 N -0.360 5.360 12 C -0.006 4.006 13 C -0.155 4.155 14 C -0.113 4.113 15 H 0.095 0.905 16 C 0.013 3.987 17 N -0.337 5.337 18 C -0.367 4.367 19 H 0.109 0.891 20 C -0.178 4.178 21 N -0.554 5.554 22 Si 0.713 3.287 23 H -0.212 1.212 24 H -0.231 1.231 25 H -0.203 1.203 26 C -0.009 4.009 27 C -0.120 4.120 28 H 0.097 0.903 29 C -0.197 4.197 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.154 0.846 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.270 0.730 38 H 0.244 0.756 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.048 0.952 44 H 0.051 0.949 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.043 0.957 48 H 0.072 0.928 49 H 0.071 0.929 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.072 25.616 15.656 30.179 hybrid contribution 0.775 0.308 0.093 0.839 sum -2.298 25.924 15.749 30.420 Atomic orbital electron populations 1.21860 0.93005 1.02773 1.02765 1.20371 0.96895 0.96449 0.91275 1.21856 1.01624 0.94079 1.02778 1.23839 0.96848 0.95354 0.84119 1.84360 1.58729 1.48991 1.16215 1.28015 0.93101 0.85626 0.98872 1.70732 1.21376 1.25760 1.01317 1.21506 1.06669 0.99464 0.92063 1.16694 0.78351 0.80152 0.86186 1.90753 1.59398 1.67697 1.23331 1.45844 1.50674 1.28265 1.11186 1.21559 0.98395 0.93109 0.87519 1.21772 0.99173 0.95997 0.98540 1.22177 0.97115 0.96147 0.95868 0.90491 1.21441 0.94237 0.86626 0.96382 1.44782 1.07232 1.13766 1.67897 1.18652 0.91862 1.00239 1.25908 0.89110 1.24998 0.97570 0.95810 0.99441 1.69846 1.38104 1.03178 1.44313 0.86970 0.86321 0.77259 0.78112 1.21232 1.23123 1.20265 1.22003 0.87420 0.97792 0.93680 1.22358 0.94253 0.95974 0.99402 0.90284 1.21708 0.96136 1.00594 1.01290 0.92263 0.90955 0.92037 0.84625 0.92164 0.90961 0.92266 0.72954 0.75637 0.91164 0.90540 0.90834 0.91328 0.95207 0.94909 0.92781 0.92515 0.95746 0.92792 0.92917 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.18 37.16 0.34 -0.71 16 2 C -0.03 -0.27 3.24 -91.77 -0.30 -0.57 16 3 C -0.15 -1.00 9.18 37.16 0.34 -0.65 16 4 C 0.06 0.55 5.95 -35.08 -0.21 0.34 16 5 O -0.20 -1.63 10.73 6.53 0.07 -1.56 16 6 C 0.17 1.17 13.19 51.96 0.69 1.86 16 7 N -0.46 -4.63 11.06 -11.48 -0.13 -4.76 16 8 C -0.08 -0.89 6.99 -83.02 -0.58 -1.47 16 9 C 0.60 7.89 7.81 -12.52 -0.10 7.79 16 10 O -0.53 -8.14 14.47 5.27 0.08 -8.06 16 11 N -0.71 -8.31 5.55 -61.39 -0.34 -8.65 16 12 C 0.12 1.44 5.56 -4.05 -0.02 1.42 16 13 C -0.12 -1.40 4.74 -26.73 -0.13 -1.53 16 14 C -0.09 -1.44 2.38 -88.78 -0.21 -1.65 16 15 H 0.08 1.15 8.02 -51.93 -0.42 0.73 16 16 C 0.14 2.75 6.25 -3.06 -0.02 2.73 16 17 N -0.61 -15.07 3.21 -170.07 -0.55 -15.62 16 18 C -0.24 -6.96 10.57 -15.06 -0.16 -7.12 16 19 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 20 C 0.02 0.60 5.43 -17.43 -0.09 0.50 16 21 N -0.91 -28.62 13.97 55.49 0.78 -27.84 16 22 Si 0.88 23.11 24.27 -169.99 -4.13 18.98 16 23 H -0.29 -7.15 6.49 56.52 0.37 -6.78 16 24 H -0.30 -8.02 7.11 56.52 0.40 -7.61 16 25 H -0.28 -7.16 6.66 56.52 0.38 -6.79 16 26 C 0.12 2.55 4.16 -2.52 -0.01 2.54 16 27 C -0.10 -1.65 3.09 -88.47 -0.27 -1.93 16 28 H 0.08 1.27 8.05 -51.93 -0.42 0.85 16 29 C -0.14 -1.88 9.30 37.16 0.35 -1.53 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.14 1.44 5.52 -51.93 -0.29 1.16 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.25 0.37 8.06 -52.49 -0.42 -0.05 16 38 H 0.41 4.19 8.20 -40.82 -0.33 3.85 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.08 1.06 7.69 -51.93 -0.40 0.66 16 41 H 0.07 0.90 7.95 -51.93 -0.41 0.49 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.03 0.65 7.70 -51.93 -0.40 0.25 16 45 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 46 H 0.06 1.34 6.64 -51.93 -0.34 1.00 16 47 H 0.03 0.57 5.47 -51.93 -0.28 0.28 16 48 H 0.05 0.73 8.11 -51.93 -0.42 0.30 16 49 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 50 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 397.84 15.07 6.00 6.00 Total: -1.00 -34.94 397.84 -7.02 -41.96 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -8.41 Total: -0.47 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -0.39 Total: 0.03 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: -0.24 Total: -56.87 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.15 Total: -9.62 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -4.13 Total: 18.98 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.94 -7.02 -41.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103619728.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.932 kcal (2) G-P(sol) polarization free energy of solvation -34.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds