Wall clock time and date at job start Tue Mar 31 2020 18:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47312 * 2 1 4 4 C 1.50699 * 109.47094 * 120.00103 * 2 1 3 5 5 O 1.34251 * 126.52660 * 300.16183 * 4 2 1 6 6 C 1.34050 * 108.22955 * 180.22744 * 5 4 2 7 7 N 1.29935 * 109.24044 * 359.76960 * 6 5 4 8 8 C 1.36061 * 108.47701 * 0.02562 * 7 6 5 9 9 C 1.47420 * 126.44850 * 179.97438 * 8 7 6 10 10 O 1.21613 * 120.00219 * 180.02562 * 9 8 7 11 11 N 1.34780 * 120.00244 * 0.02562 * 9 8 7 12 12 C 1.46497 * 120.00316 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.46857 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47006 * 179.97438 * 13 12 11 15 15 H 1.09005 * 110.63590 * 51.85907 * 14 13 12 16 16 C 1.54337 * 111.00569 * 288.78250 * 14 13 12 17 17 N 1.47015 * 107.26507 * 219.59972 * 16 14 13 18 18 C 1.36937 * 125.64768 * 178.84634 * 17 16 14 19 19 H 1.07996 * 119.99824 * 340.94235 * 18 17 16 20 20 C 1.38807 * 120.00250 * 161.21713 * 18 17 16 21 21 N 1.31620 * 120.00450 * 157.60272 * 20 18 17 22 22 Si 1.86801 * 119.99892 * 337.60961 * 20 18 17 23 23 H 1.48500 * 109.47209 * 84.53337 * 22 20 18 24 24 H 1.48506 * 109.47109 * 204.53340 * 22 20 18 25 25 H 1.48497 * 109.47176 * 324.53007 * 22 20 18 26 26 C 1.47427 * 108.70568 * 358.58089 * 17 16 14 27 27 C 1.54914 * 104.83009 * 24.35900 * 26 17 16 28 28 H 1.09007 * 111.00378 * 81.06227 * 27 26 17 29 29 C 1.52998 * 111.00145 * 204.87596 * 27 26 17 30 30 H 1.09004 * 109.46992 * 300.00085 * 1 2 3 31 31 H 1.09005 * 109.46750 * 59.99626 * 1 2 3 32 32 H 1.08996 * 109.47103 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46992 * 239.99915 * 2 1 3 34 34 H 1.08999 * 109.47428 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.46981 * 300.00445 * 3 2 1 36 36 H 1.09004 * 109.47161 * 60.00019 * 3 2 1 37 37 H 1.08002 * 125.38043 * 179.79947 * 6 5 4 38 38 H 0.97004 * 119.99395 * 359.97438 * 11 9 8 39 39 H 1.08994 * 109.46946 * 59.99649 * 12 11 9 40 40 H 1.09002 * 109.46746 * 299.99680 * 12 11 9 41 41 H 1.08994 * 109.47558 * 60.00110 * 13 12 11 42 42 H 1.09002 * 109.47253 * 299.99457 * 13 12 11 43 43 H 1.08994 * 109.98977 * 100.12069 * 16 14 13 44 44 H 1.08996 * 109.77507 * 338.95612 * 16 14 13 45 45 H 0.97000 * 120.00315 * 179.97438 * 21 20 18 46 46 H 1.08999 * 110.36487 * 143.19046 * 26 17 16 47 47 H 1.08995 * 110.37008 * 265.51818 * 26 17 16 48 48 H 1.08995 * 109.47287 * 58.54469 * 29 27 26 49 49 H 1.08999 * 109.47052 * 178.54557 * 29 27 26 50 50 H 1.08997 * 109.46887 * 298.54352 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.7877 -0.3697 2.5057 6 6 2.4154 -1.2466 3.3019 7 7 3.0365 -2.1217 2.5693 8 6 2.8183 -1.8210 1.2604 9 6 3.3395 -2.5568 0.0941 10 8 3.0700 -2.1824 -1.0312 11 7 4.1148 -3.6444 0.2748 12 6 4.6332 -4.3752 -0.8842 13 6 5.4775 -5.5579 -0.4053 14 6 6.0184 -6.3215 -1.6158 15 1 6.5175 -5.6423 -2.3069 16 6 4.8897 -7.0910 -2.3340 17 7 5.4394 -8.3921 -2.7416 18 6 4.7500 -9.3821 -3.3896 19 1 3.6702 -9.3869 -3.3746 20 6 5.4392 -10.3826 -4.0611 21 7 4.8556 -11.5381 -4.2990 22 14 7.1951 -10.0891 -4.6269 23 1 8.1300 -10.3780 -3.5098 24 1 7.5019 -10.9827 -5.7727 25 1 7.3494 -8.6735 -5.0480 26 6 6.8574 -8.4522 -2.3428 27 6 6.9811 -7.4522 -1.1661 28 1 6.6446 -7.9037 -0.2328 29 6 8.4146 -6.9336 -1.0356 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6768 1.9564 0.8900 37 1 2.4059 -1.2289 4.3818 38 1 4.3301 -3.9428 1.1723 39 1 5.2502 -3.7093 -1.4873 40 1 3.8006 -4.7422 -1.4844 41 1 4.8609 -6.2239 0.1980 42 1 6.3101 -5.1906 0.1946 43 1 4.5608 -6.5359 -3.2125 44 1 4.0526 -7.2394 -1.6519 45 1 5.3371 -12.2371 -4.7686 46 1 7.1168 -9.4586 -2.0142 47 1 7.4975 -8.1456 -3.1701 48 1 8.7120 -6.4496 -1.9658 49 1 8.4677 -6.2142 -0.2185 50 1 9.0853 -7.7677 -0.8294 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103619728.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:14 Heat of formation + Delta-G solvation = -35.485410 kcal Electronic energy + Delta-G solvation = -28834.123592 eV Core-core repulsion = 24861.964190 eV Total energy + Delta-G solvation = -3972.159402 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.49054 -40.73477 -39.93497 -36.94466 -36.33674 -35.83213 -35.03676 -33.10548 -32.56789 -30.76620 -28.96018 -28.14690 -27.53408 -26.19488 -24.69105 -24.34074 -23.29689 -21.99576 -21.82266 -21.36207 -20.79788 -19.14452 -18.93120 -17.83358 -17.41227 -17.08566 -16.95319 -16.84722 -16.28538 -16.08689 -15.74388 -15.42392 -15.20082 -14.89142 -14.69207 -14.61975 -14.49939 -14.33884 -14.13860 -13.73285 -13.38956 -13.13110 -13.01555 -12.92317 -12.76434 -12.74149 -12.49805 -12.44493 -12.34014 -12.26682 -12.14749 -12.14034 -11.78038 -11.73736 -11.47587 -11.31786 -11.26744 -11.01013 -10.79930 -10.27647 -9.91148 -9.05711 -8.20565 -5.46641 0.02114 1.04040 1.27309 1.35916 1.45338 1.53426 2.08188 2.19299 2.38994 3.01877 3.08688 3.33994 3.43810 3.58983 3.71414 3.81370 3.88249 3.95044 4.04761 4.17188 4.21734 4.28486 4.36636 4.51763 4.55842 4.57109 4.61743 4.68884 4.69974 4.73971 4.77453 4.84296 4.86683 4.92250 4.99411 5.05228 5.06272 5.10278 5.18508 5.19338 5.23672 5.26013 5.31783 5.39891 5.42147 5.56227 5.67404 6.08075 6.26505 6.57567 6.75773 7.05950 7.52689 8.10249 8.99661 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020181 B = 0.002138 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.076395 B =13093.711725 C =13618.264833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.035 4.035 3 C -0.140 4.140 4 C 0.054 3.946 5 O -0.195 6.195 6 C 0.195 3.805 7 N -0.491 5.491 8 C -0.104 4.104 9 C 0.594 3.406 10 O -0.565 6.565 11 N -0.701 5.701 12 C 0.122 3.878 13 C -0.101 4.101 14 C -0.079 4.079 15 H 0.088 0.912 16 C 0.132 3.868 17 N -0.631 5.631 18 C -0.237 4.237 19 H 0.055 0.945 20 C -0.039 4.039 21 N -0.957 5.957 22 Si 0.949 3.051 23 H -0.266 1.266 24 H -0.307 1.307 25 H -0.271 1.271 26 C 0.106 3.894 27 C -0.088 4.088 28 H 0.085 0.915 29 C -0.135 4.135 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.112 0.888 34 H 0.051 0.949 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.305 0.695 38 H 0.417 0.583 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.101 0.899 43 H 0.021 0.979 44 H 0.030 0.970 45 H 0.263 0.737 46 H 0.035 0.965 47 H 0.022 0.978 48 H 0.054 0.946 49 H 0.085 0.915 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.465 28.914 19.045 34.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.054 4.054 3 C -0.198 4.198 4 C -0.003 4.003 5 O -0.081 6.081 6 C -0.033 4.033 7 N -0.219 5.219 8 C -0.222 4.222 9 C 0.381 3.619 10 O -0.445 6.445 11 N -0.352 5.352 12 C -0.001 4.001 13 C -0.139 4.139 14 C -0.098 4.098 15 H 0.107 0.893 16 C 0.007 3.993 17 N -0.357 5.357 18 C -0.365 4.365 19 H 0.073 0.927 20 C -0.233 4.233 21 N -0.604 5.604 22 Si 0.777 3.223 23 H -0.192 1.192 24 H -0.235 1.235 25 H -0.197 1.197 26 C -0.018 4.018 27 C -0.108 4.108 28 H 0.104 0.896 29 C -0.192 4.192 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.130 0.870 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.320 0.680 38 H 0.254 0.746 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.119 0.881 43 H 0.039 0.961 44 H 0.048 0.952 45 H 0.072 0.928 46 H 0.053 0.947 47 H 0.039 0.961 48 H 0.073 0.927 49 H 0.104 0.896 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.328 28.449 18.368 33.890 hybrid contribution 0.098 -0.537 -0.646 0.846 sum -1.230 27.912 17.722 33.086 Atomic orbital electron populations 1.21838 0.91873 1.02257 1.03975 1.20363 0.97802 0.97149 0.90042 1.21827 1.01039 0.92941 1.03952 1.23990 0.96312 0.94956 0.85050 1.84390 1.58869 1.49268 1.15600 1.29200 0.90288 0.83565 1.00289 1.70703 1.23141 1.27323 1.00760 1.21363 1.08161 1.00360 0.92335 1.17017 0.78140 0.80306 0.86453 1.90736 1.60518 1.68588 1.24653 1.45741 1.50266 1.27795 1.11380 1.21419 0.97692 0.93352 0.87654 1.21636 1.00029 0.95192 0.97075 1.22102 0.95049 0.95767 0.96926 0.89336 1.21646 0.96062 0.85158 0.96430 1.44936 1.08590 1.14700 1.67481 1.18601 0.90908 1.01314 1.25724 0.92692 1.25658 1.02050 0.95484 1.00137 1.69972 1.40217 1.04197 1.46029 0.85910 0.81617 0.77034 0.77740 1.19220 1.23511 1.19703 1.22165 0.85430 0.98471 0.95773 1.22322 0.96842 0.94520 0.97075 0.89640 1.21703 0.93361 1.01445 1.02736 0.91136 0.89643 0.93387 0.87022 0.93018 0.89661 0.91192 0.68034 0.74627 0.91014 0.92800 0.90849 0.88093 0.96101 0.95186 0.92836 0.94656 0.96072 0.92664 0.89586 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.18 71.98 0.66 -1.25 16 2 C -0.04 -0.59 3.24 -11.54 -0.04 -0.63 16 3 C -0.14 -1.75 9.18 71.98 0.66 -1.09 16 4 C 0.05 1.04 5.95 25.19 0.15 1.18 16 5 O -0.20 -2.78 10.73 0.44 0.00 -2.77 16 6 C 0.20 2.06 13.19 130.52 1.72 3.78 16 7 N -0.49 -8.91 11.06 -305.15 -3.37 -12.28 16 8 C -0.10 -2.32 6.99 40.41 0.28 -2.04 16 9 C 0.59 15.64 7.81 86.66 0.68 16.32 16 10 O -0.56 -17.77 14.47 -4.07 -0.06 -17.83 16 11 N -0.70 -15.78 5.55 -466.38 -2.59 -18.37 16 12 C 0.12 2.87 5.56 86.38 0.48 3.35 16 13 C -0.10 -2.14 4.74 30.59 0.14 -2.00 16 14 C -0.08 -2.25 2.38 -9.60 -0.02 -2.27 16 15 H 0.09 2.37 8.02 -2.38 -0.02 2.36 16 16 C 0.13 5.24 6.25 86.73 0.54 5.78 16 17 N -0.63 -31.52 3.21 -691.99 -2.22 -33.74 16 18 C -0.24 -14.29 10.57 84.03 0.89 -13.41 16 19 H 0.06 3.61 8.06 -2.91 -0.02 3.58 16 20 C -0.04 -2.39 5.43 84.86 0.46 -1.93 16 21 N -0.96 -62.40 13.97 21.65 0.30 -62.09 16 22 Si 0.95 48.61 24.27 68.60 1.66 50.27 16 23 H -0.27 -12.72 6.49 99.48 0.65 -12.07 16 24 H -0.31 -15.76 7.11 99.48 0.71 -15.06 16 25 H -0.27 -13.52 6.66 99.48 0.66 -12.86 16 26 C 0.11 4.54 4.16 86.86 0.36 4.90 16 27 C -0.09 -2.66 3.09 -9.40 -0.03 -2.68 16 28 H 0.09 2.49 8.05 -2.38 -0.02 2.47 16 29 C -0.13 -3.04 9.30 71.98 0.67 -2.37 16 30 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.11 2.48 5.52 -2.38 -0.01 2.47 16 34 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.30 -0.56 8.06 -2.91 -0.02 -0.58 16 38 H 0.42 7.84 8.20 -92.71 -0.76 7.08 16 39 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.05 1.52 7.69 -2.39 -0.02 1.50 16 41 H 0.07 1.61 7.95 -2.39 -0.02 1.59 16 42 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.03 1.20 7.70 -2.39 -0.02 1.19 16 45 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 46 H 0.04 1.65 6.64 -2.39 -0.02 1.63 16 47 H 0.02 0.94 5.47 -2.39 -0.01 0.93 16 48 H 0.05 1.25 8.11 -2.39 -0.02 1.23 16 49 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -80.35 397.84 1.41 -78.94 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.07 Total: 12.21 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 7.61 Total: 5.65 kcal Atomic # 7 Polarization: -118.60 SS G_CDS: -7.88 Total: -126.48 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.05 Total: -20.60 kcal Atomic # 14 Polarization: 48.61 SS G_CDS: 1.66 Total: 50.27 kcal Total: -80.35 1.41 -78.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103619728.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.457 kcal (2) G-P(sol) polarization free energy of solvation -80.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds