Wall clock time and date at job start Tue Mar 31 2020 18:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46933 * 2 1 4 4 C 1.50705 * 109.46819 * 120.00001 * 2 1 3 5 5 O 1.33493 * 126.82941 * 300.00065 * 4 2 1 6 6 N 1.20660 * 113.15523 * 180.02562 * 5 4 2 7 7 C 1.30012 * 112.30188 * 359.97438 * 6 5 4 8 8 C 1.37363 * 126.82874 * 120.00312 * 4 2 1 9 9 C 1.47394 * 128.56338 * 0.25421 * 8 4 2 10 10 O 1.21607 * 120.00473 * 325.61606 * 9 8 4 11 11 N 1.34782 * 119.99912 * 145.61197 * 9 8 4 12 12 C 1.48118 * 127.02888 * 3.99012 * 11 9 8 13 13 C 1.54601 * 103.41583 * 219.28021 * 12 11 9 14 14 H 1.08998 * 110.57632 * 81.17167 * 13 12 11 15 15 C 1.53002 * 110.98579 * 204.37300 * 13 12 11 16 16 C 1.54617 * 102.91363 * 322.86838 * 13 12 11 17 17 H 1.09002 * 110.41102 * 262.76314 * 16 13 12 18 18 C 1.53003 * 110.32323 * 140.59486 * 16 13 12 19 19 C 1.53006 * 109.46588 * 177.92588 * 18 16 13 20 20 N 1.46503 * 109.46892 * 180.02562 * 19 18 16 21 21 C 1.36932 * 120.00195 * 179.97438 * 20 19 18 22 22 H 1.07999 * 119.99904 * 359.97438 * 21 20 19 23 23 C 1.38813 * 120.00489 * 179.97438 * 21 20 19 24 24 N 1.31620 * 119.99229 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00225 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46972 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47246 * 120.00273 * 25 23 21 28 28 H 1.48499 * 109.46898 * 239.99994 * 25 23 21 29 29 C 1.47481 * 127.03383 * 184.29692 * 11 9 8 30 30 H 1.09002 * 109.46960 * 60.00498 * 1 2 3 31 31 H 1.09007 * 109.46959 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47598 * 300.00031 * 1 2 3 33 33 H 1.09002 * 109.46988 * 239.99685 * 2 1 3 34 34 H 1.09000 * 109.46971 * 180.02562 * 3 2 1 35 35 H 1.08994 * 109.47179 * 299.99640 * 3 2 1 36 36 H 1.09003 * 109.47015 * 60.00018 * 3 2 1 37 37 H 1.08000 * 127.33430 * 179.97438 * 7 6 5 38 38 H 1.08997 * 110.66579 * 337.76003 * 12 11 9 39 39 H 1.08998 * 110.66121 * 100.88754 * 12 11 9 40 40 H 1.08998 * 109.47318 * 173.65760 * 15 13 12 41 41 H 1.08996 * 109.47335 * 293.65382 * 15 13 12 42 42 H 1.09001 * 109.47206 * 53.65545 * 15 13 12 43 43 H 1.08998 * 109.47320 * 297.91908 * 18 16 13 44 44 H 1.08996 * 109.47611 * 57.92363 * 18 16 13 45 45 H 1.09006 * 109.46873 * 299.99384 * 19 18 16 46 46 H 1.08996 * 109.47329 * 59.99602 * 19 18 16 47 47 H 0.97007 * 119.99868 * 359.97438 * 20 19 18 48 48 H 0.97011 * 119.99446 * 180.02562 * 24 23 21 49 49 H 1.09003 * 109.91629 * 273.87956 * 29 11 9 50 50 H 1.09001 * 109.91525 * 34.96915 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.7953 -0.3753 2.5008 6 7 2.3209 -1.1179 3.2934 7 6 2.9918 -2.0668 2.7105 8 6 2.8251 -1.8316 1.2681 9 6 3.3778 -2.6042 0.1411 10 8 2.7386 -2.7225 -0.8867 11 7 4.5918 -3.1797 0.2497 12 6 5.4627 -3.2056 1.4474 13 6 6.8807 -3.0069 0.8642 14 1 7.0707 -1.9513 0.6704 15 6 7.9442 -3.5837 1.8008 16 6 6.8251 -3.8052 -0.4588 17 1 7.2504 -4.7993 -0.3211 18 6 7.5736 -3.0562 -1.5632 19 6 7.5506 -3.8864 -2.8482 20 7 8.2678 -3.1696 -3.9056 21 6 8.3794 -3.7224 -5.1534 22 1 7.9390 -4.6871 -5.3579 23 6 9.0584 -3.0430 -6.1555 24 7 9.5955 -1.8675 -5.9060 25 14 9.2100 -3.7969 -7.8578 26 1 8.5253 -5.1144 -7.8784 27 1 8.5804 -2.8957 -8.8561 28 1 10.6452 -3.9800 -8.1920 29 6 5.3272 -3.9069 -0.8017 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 3.5526 -2.8588 3.1845 38 1 5.2089 -2.3907 2.1253 39 1 5.3894 -4.1671 1.9555 40 1 8.9200 -3.5326 1.3179 41 1 7.9657 -3.0067 2.7253 42 1 7.7045 -4.6228 2.0266 43 1 7.0905 -2.0957 -1.7426 44 1 8.6061 -2.8916 -1.2553 45 1 8.0338 -4.8470 -2.6688 46 1 6.5181 -4.0510 -3.1561 47 1 8.6637 -2.3032 -3.7218 48 1 10.0698 -1.3925 -6.6064 49 1 5.0195 -4.9526 -0.8145 50 1 5.1340 -3.4514 -1.7728 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104863870.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:56 Heat of formation + Delta-G solvation = 22.521119 kcal Electronic energy + Delta-G solvation = -29410.010056 eV Core-core repulsion = 25440.366006 eV Total energy + Delta-G solvation = -3969.644051 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.22679 -40.28941 -38.21224 -36.27042 -35.16987 -34.11393 -33.14137 -32.12919 -31.18957 -30.17405 -27.53470 -27.46259 -26.67537 -25.14656 -24.11050 -23.48710 -22.52579 -21.31233 -20.76537 -19.89654 -19.42539 -18.04551 -17.79149 -17.08450 -16.71700 -16.44903 -15.76373 -15.40998 -14.84729 -14.66019 -14.47828 -14.23075 -14.02548 -13.69244 -13.60876 -13.47476 -13.26064 -13.01790 -12.89138 -12.56895 -12.54856 -12.23805 -12.01964 -11.89572 -11.78972 -11.64282 -11.48323 -11.21501 -11.18353 -11.01687 -10.86116 -10.71999 -10.57348 -10.42705 -10.31666 -10.22584 -9.94024 -9.74091 -9.65528 -8.86221 -8.84065 -6.89899 -5.74869 -3.03271 0.85176 1.49297 2.41309 2.65178 2.92895 3.44798 3.50399 3.52716 3.85508 3.95216 4.22930 4.31353 4.41350 4.52117 4.56983 4.66890 4.68023 4.79097 4.93086 5.05766 5.15925 5.17311 5.21536 5.28153 5.30252 5.41268 5.45295 5.46975 5.49476 5.51056 5.58574 5.67736 5.68817 5.75683 5.85134 5.86565 5.91121 5.94447 5.96630 6.01297 6.11789 6.28074 6.36759 6.41836 6.84801 6.89398 7.30015 7.72472 7.83090 7.92907 8.44284 9.55317 10.13718 10.47997 11.48258 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012560 B = 0.002646 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.825879 B =10580.096754 C =11987.595664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.024 4.024 3 C -0.150 4.150 4 C 0.054 3.946 5 O 0.096 5.904 6 N -0.355 5.355 7 C 0.020 3.980 8 C -0.254 4.254 9 C 0.614 3.386 10 O -0.527 6.527 11 N -0.610 5.610 12 C 0.096 3.904 13 C -0.103 4.103 14 H 0.085 0.915 15 C -0.141 4.141 16 C -0.091 4.091 17 H 0.089 0.911 18 C -0.117 4.117 19 C 0.151 3.849 20 N -0.734 5.734 21 C -0.237 4.237 22 H 0.071 0.929 23 C -0.016 4.016 24 N -0.934 5.934 25 Si 0.907 3.093 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.292 1.292 29 C 0.109 3.891 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.119 0.881 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.200 0.800 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.018 0.982 46 H 0.019 0.981 47 H 0.383 0.617 48 H 0.254 0.746 49 H 0.069 0.931 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.965 1.837 21.718 25.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.043 4.043 3 C -0.208 4.208 4 C -0.010 4.010 5 O 0.035 5.965 6 N -0.060 5.060 7 C -0.162 4.162 8 C -0.262 4.262 9 C 0.402 3.598 10 O -0.404 6.404 11 N -0.343 5.343 12 C -0.027 4.027 13 C -0.122 4.122 14 H 0.104 0.896 15 C -0.198 4.198 16 C -0.111 4.111 17 H 0.107 0.893 18 C -0.155 4.155 19 C 0.024 3.976 20 N -0.378 5.378 21 C -0.369 4.369 22 H 0.089 0.911 23 C -0.211 4.211 24 N -0.583 5.583 25 Si 0.738 3.262 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.012 4.012 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.137 0.863 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.217 0.783 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.036 0.964 46 H 0.037 0.963 47 H 0.216 0.784 48 H 0.064 0.936 49 H 0.087 0.913 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.681 2.031 22.281 26.760 hybrid contribution 0.715 -0.644 -1.415 1.711 sum -13.966 1.387 20.865 25.147 Atomic orbital electron populations 1.21849 0.92487 1.02976 1.03048 1.20123 0.97314 0.96313 0.90577 1.21905 1.01834 0.93783 1.03247 1.24833 0.94381 0.94358 0.87472 1.84547 1.55608 1.43805 1.12513 1.73666 1.11620 1.04514 1.16161 1.26417 1.00410 0.99437 0.89965 1.22002 1.08365 1.01511 0.94279 1.16356 0.79774 0.78203 0.85445 1.90841 1.58572 1.60851 1.30116 1.48540 1.16682 1.54559 1.14542 1.22777 0.89685 1.01954 0.88234 1.22298 0.93618 1.01110 0.95168 0.89642 1.21735 0.98729 1.00677 0.98707 1.22168 0.93959 1.00290 0.94656 0.89319 1.21799 1.00094 0.99097 0.94511 1.20706 0.95331 0.94189 0.87420 1.42371 1.65183 1.22388 1.07863 1.19286 1.28445 1.01618 0.87526 0.91143 1.24746 1.01061 0.96980 0.98351 1.69677 1.41466 1.14343 1.32828 0.86115 0.77273 0.78218 0.84612 1.20532 1.21851 1.21889 1.22292 0.90455 0.96450 0.92034 0.90818 0.91870 0.91867 0.86323 0.91978 0.90714 0.91734 0.78299 0.90193 0.90475 0.91602 0.92544 0.92331 0.91859 0.91449 0.96431 0.96293 0.78355 0.93606 0.91311 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.18 37.16 0.34 -0.76 16 2 C -0.02 -0.22 3.28 -91.77 -0.30 -0.52 16 3 C -0.15 -1.14 9.18 37.16 0.34 -0.80 16 4 C 0.05 0.57 6.06 -34.62 -0.21 0.36 16 5 O 0.10 1.01 11.06 18.65 0.21 1.22 16 6 N -0.35 -3.83 12.01 31.80 0.38 -3.45 16 7 C 0.02 0.19 10.41 -14.73 -0.15 0.04 16 8 C -0.25 -2.88 5.94 -102.90 -0.61 -3.49 16 9 C 0.61 8.29 7.72 -12.53 -0.10 8.19 16 10 O -0.53 -8.84 16.08 5.27 0.08 -8.75 16 11 N -0.61 -7.20 3.29 -171.26 -0.56 -7.76 16 12 C 0.10 0.81 5.56 -2.31 -0.01 0.80 16 13 C -0.10 -0.95 3.18 -88.93 -0.28 -1.23 16 14 H 0.09 0.87 7.86 -51.93 -0.41 0.47 16 15 C -0.14 -1.05 9.17 37.16 0.34 -0.71 16 16 C -0.09 -1.05 2.61 -89.25 -0.23 -1.28 16 17 H 0.09 0.94 7.86 -51.93 -0.41 0.54 16 18 C -0.12 -1.79 4.53 -26.73 -0.12 -1.91 16 19 C 0.15 2.99 6.08 -4.04 -0.02 2.97 16 20 N -0.73 -18.87 5.60 -59.90 -0.34 -19.20 16 21 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 22 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 23 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 24 N -0.93 -28.59 13.06 55.49 0.72 -27.87 16 25 Si 0.91 22.70 29.55 -169.99 -5.02 17.67 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 29 C 0.11 1.39 6.14 -2.98 -0.02 1.37 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.12 1.32 6.62 -51.93 -0.34 0.98 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.20 1.26 7.10 -52.49 -0.37 0.89 16 38 H 0.08 0.60 5.68 -51.93 -0.30 0.30 16 39 H 0.08 0.52 8.02 -51.93 -0.42 0.10 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.39 8.11 -51.93 -0.42 -0.03 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.02 0.39 6.88 -51.93 -0.36 0.03 16 47 H 0.38 10.32 7.67 -40.82 -0.31 10.00 16 48 H 0.25 7.49 8.31 -40.81 -0.34 7.15 16 49 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 50 H 0.09 1.38 6.68 -51.93 -0.35 1.03 16 LS Contribution 402.81 15.07 6.07 6.07 Total: -1.00 -33.80 402.81 -8.05 -41.85 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -8.30 Total: 4.68 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -1.29 Total: -4.46 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: 0.21 Total: -58.28 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.29 Total: -7.54 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.80 -8.05 -41.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104863870.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.367 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds