Wall clock time and date at job start Tue Mar 31 2020 18:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46933 * 2 1 4 4 C 1.50705 * 109.46819 * 120.00001 * 2 1 3 5 5 O 1.33493 * 126.82941 * 300.00065 * 4 2 1 6 6 N 1.20660 * 113.15523 * 180.02562 * 5 4 2 7 7 C 1.30012 * 112.30188 * 359.97438 * 6 5 4 8 8 C 1.37363 * 126.82874 * 120.00312 * 4 2 1 9 9 C 1.47394 * 128.56338 * 0.25421 * 8 4 2 10 10 O 1.21607 * 120.00473 * 325.61606 * 9 8 4 11 11 N 1.34782 * 119.99912 * 145.61197 * 9 8 4 12 12 C 1.48118 * 127.02888 * 3.99012 * 11 9 8 13 13 C 1.54601 * 103.41583 * 219.28021 * 12 11 9 14 14 H 1.08998 * 110.57632 * 81.17167 * 13 12 11 15 15 C 1.53002 * 110.98579 * 204.37300 * 13 12 11 16 16 C 1.54617 * 102.91363 * 322.86838 * 13 12 11 17 17 H 1.09002 * 110.41102 * 262.76314 * 16 13 12 18 18 C 1.53003 * 110.32323 * 140.59486 * 16 13 12 19 19 C 1.53006 * 109.46588 * 177.92588 * 18 16 13 20 20 N 1.46503 * 109.46892 * 180.02562 * 19 18 16 21 21 C 1.36932 * 120.00195 * 179.97438 * 20 19 18 22 22 H 1.07999 * 119.99904 * 359.97438 * 21 20 19 23 23 C 1.38813 * 120.00489 * 179.97438 * 21 20 19 24 24 N 1.31620 * 119.99229 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00225 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46972 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47246 * 120.00273 * 25 23 21 28 28 H 1.48499 * 109.46898 * 239.99994 * 25 23 21 29 29 C 1.47481 * 127.03383 * 184.29692 * 11 9 8 30 30 H 1.09002 * 109.46960 * 60.00498 * 1 2 3 31 31 H 1.09007 * 109.46959 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47598 * 300.00031 * 1 2 3 33 33 H 1.09002 * 109.46988 * 239.99685 * 2 1 3 34 34 H 1.09000 * 109.46971 * 180.02562 * 3 2 1 35 35 H 1.08994 * 109.47179 * 299.99640 * 3 2 1 36 36 H 1.09003 * 109.47015 * 60.00018 * 3 2 1 37 37 H 1.08000 * 127.33430 * 179.97438 * 7 6 5 38 38 H 1.08997 * 110.66579 * 337.76003 * 12 11 9 39 39 H 1.08998 * 110.66121 * 100.88754 * 12 11 9 40 40 H 1.08998 * 109.47318 * 173.65760 * 15 13 12 41 41 H 1.08996 * 109.47335 * 293.65382 * 15 13 12 42 42 H 1.09001 * 109.47206 * 53.65545 * 15 13 12 43 43 H 1.08998 * 109.47320 * 297.91908 * 18 16 13 44 44 H 1.08996 * 109.47611 * 57.92363 * 18 16 13 45 45 H 1.09006 * 109.46873 * 299.99384 * 19 18 16 46 46 H 1.08996 * 109.47329 * 59.99602 * 19 18 16 47 47 H 0.97007 * 119.99868 * 359.97438 * 20 19 18 48 48 H 0.97011 * 119.99446 * 180.02562 * 24 23 21 49 49 H 1.09003 * 109.91629 * 273.87956 * 29 11 9 50 50 H 1.09001 * 109.91525 * 34.96915 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.7953 -0.3753 2.5008 6 7 2.3209 -1.1179 3.2934 7 6 2.9918 -2.0668 2.7105 8 6 2.8251 -1.8316 1.2681 9 6 3.3778 -2.6042 0.1411 10 8 2.7386 -2.7225 -0.8867 11 7 4.5918 -3.1797 0.2497 12 6 5.4627 -3.2056 1.4474 13 6 6.8807 -3.0069 0.8642 14 1 7.0707 -1.9513 0.6704 15 6 7.9442 -3.5837 1.8008 16 6 6.8251 -3.8052 -0.4588 17 1 7.2504 -4.7993 -0.3211 18 6 7.5736 -3.0562 -1.5632 19 6 7.5506 -3.8864 -2.8482 20 7 8.2678 -3.1696 -3.9056 21 6 8.3794 -3.7224 -5.1534 22 1 7.9390 -4.6871 -5.3579 23 6 9.0584 -3.0430 -6.1555 24 7 9.5955 -1.8675 -5.9060 25 14 9.2100 -3.7969 -7.8578 26 1 8.5253 -5.1144 -7.8784 27 1 8.5804 -2.8957 -8.8561 28 1 10.6452 -3.9800 -8.1920 29 6 5.3272 -3.9069 -0.8017 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 3.5526 -2.8588 3.1845 38 1 5.2089 -2.3907 2.1253 39 1 5.3894 -4.1671 1.9555 40 1 8.9200 -3.5326 1.3179 41 1 7.9657 -3.0067 2.7253 42 1 7.7045 -4.6228 2.0266 43 1 7.0905 -2.0957 -1.7426 44 1 8.6061 -2.8916 -1.2553 45 1 8.0338 -4.8470 -2.6688 46 1 6.5181 -4.0510 -3.1561 47 1 8.6637 -2.3032 -3.7218 48 1 10.0698 -1.3925 -6.6064 49 1 5.0195 -4.9526 -0.8145 50 1 5.1340 -3.4514 -1.7728 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104863870.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:55 Heat of formation + Delta-G solvation = 1.882033 kcal Electronic energy + Delta-G solvation = -29410.905034 eV Core-core repulsion = 25440.366006 eV Total energy + Delta-G solvation = -3970.539028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.02070 -41.26012 -39.24884 -37.04146 -36.84278 -35.09779 -34.35352 -33.47632 -32.05093 -31.70427 -28.81114 -28.14940 -27.45455 -26.42855 -25.28854 -24.46989 -23.94470 -22.18320 -21.95253 -20.84817 -20.33179 -19.17360 -18.85961 -18.64373 -17.58694 -17.39931 -16.73515 -16.64450 -16.25341 -15.70798 -15.64519 -15.35849 -15.26474 -14.91759 -14.76347 -14.40324 -14.29639 -14.22920 -13.82964 -13.55895 -13.29157 -13.12187 -13.07355 -12.88943 -12.84327 -12.71174 -12.48091 -12.45500 -12.32682 -12.30463 -12.08189 -11.91774 -11.89913 -11.70729 -11.55221 -11.44722 -11.26878 -11.21890 -10.94557 -10.59202 -9.80769 -9.01821 -7.97418 -5.26472 -0.00532 0.71392 1.45820 1.47041 1.52194 1.57232 1.73062 2.02803 2.54459 3.10658 3.18761 3.36281 3.38930 3.51148 3.59307 3.63253 3.78499 3.97583 4.00828 4.11103 4.18097 4.27518 4.27811 4.42615 4.46154 4.48998 4.54270 4.64518 4.70929 4.71708 4.75762 4.76350 4.82473 4.84434 4.85309 4.92625 4.99116 5.04957 5.12983 5.20361 5.24892 5.25676 5.29565 5.35618 5.41200 5.48063 5.56009 6.25597 6.35983 6.90531 7.04736 7.31200 8.07595 8.30227 9.26538 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012560 B = 0.002646 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.825879 B =10580.096754 C =11987.595664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.026 4.026 3 C -0.146 4.146 4 C 0.059 3.941 5 O 0.091 5.909 6 N -0.370 5.370 7 C 0.040 3.960 8 C -0.276 4.276 9 C 0.610 3.390 10 O -0.573 6.573 11 N -0.609 5.609 12 C 0.097 3.903 13 C -0.096 4.096 14 H 0.072 0.928 15 C -0.136 4.136 16 C -0.081 4.081 17 H 0.108 0.892 18 C -0.103 4.103 19 C 0.149 3.851 20 N -0.749 5.749 21 C -0.247 4.247 22 H 0.075 0.925 23 C -0.077 4.077 24 N -0.970 5.970 25 Si 0.974 3.026 26 H -0.266 1.266 27 H -0.293 1.293 28 H -0.290 1.290 29 C 0.109 3.891 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.050 0.950 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.233 0.767 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.045 0.955 44 H 0.069 0.931 45 H 0.026 0.974 46 H 0.014 0.986 47 H 0.373 0.627 48 H 0.252 0.748 49 H 0.080 0.920 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.099 0.858 23.845 27.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.046 4.046 3 C -0.203 4.203 4 C -0.006 4.006 5 O 0.034 5.966 6 N -0.077 5.077 7 C -0.143 4.143 8 C -0.283 4.283 9 C 0.399 3.601 10 O -0.454 6.454 11 N -0.341 5.341 12 C -0.025 4.025 13 C -0.116 4.116 14 H 0.091 0.909 15 C -0.194 4.194 16 C -0.100 4.100 17 H 0.126 0.874 18 C -0.141 4.141 19 C 0.023 3.977 20 N -0.392 5.392 21 C -0.378 4.378 22 H 0.093 0.907 23 C -0.269 4.269 24 N -0.621 5.621 25 Si 0.803 3.197 26 H -0.190 1.190 27 H -0.220 1.220 28 H -0.217 1.217 29 C -0.013 4.013 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.250 0.750 38 H 0.113 0.887 39 H 0.126 0.874 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.064 0.936 44 H 0.088 0.912 45 H 0.044 0.956 46 H 0.032 0.968 47 H 0.204 0.796 48 H 0.061 0.939 49 H 0.098 0.902 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.821 1.034 24.455 28.614 hybrid contribution 0.738 -0.356 -2.055 2.212 sum -14.083 0.678 22.400 26.468 Atomic orbital electron populations 1.21840 0.91079 1.02643 1.04374 1.20150 0.98465 0.96831 0.89153 1.21895 1.01117 0.92838 1.04494 1.25087 0.93519 0.94128 0.87860 1.84546 1.55822 1.43964 1.12246 1.73659 1.12460 1.05162 1.16390 1.26857 0.99396 0.99336 0.88706 1.21916 1.09564 1.02084 0.94726 1.16663 0.79983 0.78037 0.85393 1.90810 1.60013 1.62565 1.31972 1.48620 1.16378 1.53618 1.15490 1.23050 0.88021 1.04245 0.87143 1.22253 0.95029 1.00095 0.94175 0.90918 1.21715 0.97247 1.01775 0.98631 1.22096 0.92399 1.01078 0.94447 0.87419 1.21635 1.00702 0.97998 0.93720 1.20893 0.94110 0.94736 0.87944 1.42628 1.65655 1.22365 1.08533 1.19686 1.27653 1.01700 0.88798 0.90746 1.25602 1.01408 0.97638 1.02277 1.69829 1.42630 1.15773 1.33854 0.85059 0.77132 0.77828 0.79680 1.19043 1.22028 1.21680 1.22217 0.91488 0.96731 0.90908 0.89467 0.93010 0.90557 0.88808 0.93061 0.89514 0.90434 0.75033 0.88714 0.87382 0.92548 0.90880 0.90762 0.93626 0.91202 0.95584 0.96841 0.79565 0.93949 0.90225 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.18 71.98 0.66 -1.42 16 2 C -0.03 -0.49 3.28 -11.54 -0.04 -0.53 16 3 C -0.15 -2.16 9.18 71.98 0.66 -1.50 16 4 C 0.06 1.22 6.06 25.48 0.15 1.37 16 5 O 0.09 1.83 11.06 76.98 0.85 2.68 16 6 N -0.37 -7.30 12.01 -54.20 -0.65 -7.95 16 7 C 0.04 0.66 10.41 87.29 0.91 1.56 16 8 C -0.28 -6.07 5.94 -18.75 -0.11 -6.18 16 9 C 0.61 16.62 7.72 86.65 0.67 17.29 16 10 O -0.57 -20.25 16.08 -4.05 -0.07 -20.31 16 11 N -0.61 -13.85 3.29 -813.99 -2.68 -16.53 16 12 C 0.10 1.34 5.56 86.61 0.48 1.82 16 13 C -0.10 -1.55 3.18 -9.70 -0.03 -1.58 16 14 H 0.07 1.39 7.86 -2.39 -0.02 1.37 16 15 C -0.14 -1.56 9.17 71.98 0.66 -0.90 16 16 C -0.08 -1.75 2.61 -9.90 -0.03 -1.78 16 17 H 0.11 1.99 7.86 -2.39 -0.02 1.98 16 18 C -0.10 -3.15 4.53 30.60 0.14 -3.02 16 19 C 0.15 5.99 6.08 86.38 0.53 6.51 16 20 N -0.75 -39.35 5.60 -343.44 -1.92 -41.28 16 21 C -0.25 -14.20 9.99 84.03 0.84 -13.36 16 22 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 23 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 24 N -0.97 -60.52 13.06 21.65 0.28 -60.23 16 25 Si 0.97 47.02 29.55 68.60 2.03 49.04 16 26 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 27 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 28 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 29 C 0.11 2.74 6.14 86.53 0.53 3.27 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 2.26 6.62 -2.39 -0.02 2.24 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.23 1.99 7.10 -2.91 -0.02 1.97 16 38 H 0.09 1.08 5.68 -2.39 -0.01 1.07 16 39 H 0.11 0.93 8.02 -2.39 -0.02 0.91 16 40 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.07 0.65 8.11 -2.39 -0.02 0.63 16 43 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 46 H 0.01 0.57 6.88 -2.39 -0.02 0.55 16 47 H 0.37 20.73 7.67 -92.70 -0.71 20.02 16 48 H 0.25 15.11 8.31 -92.70 -0.77 14.34 16 49 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.05 1.71 6.68 -2.39 -0.02 1.69 16 Total: -1.00 -75.29 402.81 4.56 -70.74 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 0.22 Total: 26.35 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 6.49 Total: -2.52 kcal Atomic # 7 Polarization: -121.01 SS G_CDS: -4.97 Total: -125.99 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: 0.79 Total: -17.63 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.04 kcal Total: -75.29 4.56 -70.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104863870.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.621 kcal (2) G-P(sol) polarization free energy of solvation -75.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds