Wall clock time and date at job start Tue Mar 31 2020 18:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47169 * 2 1 4 4 C 1.50705 * 109.46975 * 119.99900 * 2 1 3 5 5 O 1.34254 * 126.52457 * 300.02503 * 4 2 1 6 6 C 1.34045 * 108.22707 * 179.73775 * 5 4 2 7 7 N 1.29937 * 109.24424 * 0.02562 * 6 5 4 8 8 C 1.36071 * 108.47675 * 359.97438 * 7 6 5 9 9 C 1.47421 * 126.44773 * 180.02562 * 8 7 6 10 10 O 1.21616 * 119.99747 * 179.97438 * 9 8 7 11 11 N 1.34768 * 120.00030 * 359.97438 * 9 8 7 12 12 C 1.47489 * 127.03734 * 0.02562 * 11 9 8 13 13 C 1.54000 * 107.08320 * 154.51885 * 12 11 9 14 14 H 1.09009 * 110.32411 * 120.19957 * 13 12 11 15 15 C 1.52995 * 110.32690 * 242.30988 * 13 12 11 16 16 C 1.54616 * 105.04767 * 1.31142 * 13 12 11 17 17 H 1.09001 * 110.73675 * 263.32840 * 16 13 12 18 18 C 1.52993 * 110.74326 * 140.18716 * 16 13 12 19 19 C 1.52996 * 109.47493 * 174.99722 * 18 16 13 20 20 N 1.46501 * 109.47305 * 179.97438 * 19 18 16 21 21 C 1.36937 * 119.99785 * 180.02562 * 20 19 18 22 22 H 1.07997 * 120.00280 * 359.97438 * 21 20 19 23 23 C 1.38810 * 119.99881 * 179.97438 * 21 20 19 24 24 N 1.31620 * 120.00206 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00184 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46962 * 60.00153 * 25 23 21 27 27 H 1.48496 * 109.47489 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47394 * 300.00465 * 25 23 21 29 29 C 1.48124 * 127.03399 * 179.71083 * 11 9 8 30 30 H 1.09000 * 109.47568 * 299.99969 * 1 2 3 31 31 H 1.09000 * 109.47237 * 60.00551 * 1 2 3 32 32 H 1.09006 * 109.47348 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47115 * 239.99749 * 2 1 3 34 34 H 1.09001 * 109.47209 * 180.02562 * 3 2 1 35 35 H 1.09008 * 109.46742 * 300.00127 * 3 2 1 36 36 H 1.08999 * 109.47307 * 59.99867 * 3 2 1 37 37 H 1.07999 * 125.38200 * 179.97438 * 6 5 4 38 38 H 1.08998 * 109.91082 * 273.88403 * 12 11 9 39 39 H 1.08998 * 109.90746 * 35.15576 * 12 11 9 40 40 H 1.09001 * 109.46985 * 58.54983 * 15 13 12 41 41 H 1.09004 * 109.47486 * 178.54809 * 15 13 12 42 42 H 1.08998 * 109.47442 * 298.54792 * 15 13 12 43 43 H 1.09008 * 109.46812 * 294.99896 * 18 16 13 44 44 H 1.09001 * 109.47479 * 54.99541 * 18 16 13 45 45 H 1.08998 * 109.47258 * 300.00018 * 19 18 16 46 46 H 1.09001 * 109.46906 * 59.99467 * 19 18 16 47 47 H 0.96994 * 120.00015 * 359.97438 * 20 19 18 48 48 H 0.97000 * 120.00293 * 179.97438 * 24 23 21 49 49 H 1.09005 * 110.65583 * 337.76176 * 29 11 9 50 50 H 1.08996 * 110.66621 * 100.87876 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.7897 -0.3681 2.5058 6 6 2.4076 -1.2518 3.3020 7 7 3.0252 -2.1295 2.5695 8 6 2.8136 -1.8243 1.2604 9 6 3.3329 -2.5616 0.0942 10 8 3.0691 -2.1832 -1.0311 11 7 4.0998 -3.6549 0.2751 12 6 4.5130 -4.2474 1.5609 13 6 4.7879 -5.7406 1.3034 14 1 5.8214 -5.9835 1.5508 15 6 3.8287 -6.6066 2.1226 16 6 4.5366 -5.9401 -0.2091 17 1 3.5290 -6.3162 -0.3866 18 6 5.5790 -6.8839 -0.8117 19 6 5.2316 -7.1593 -2.2761 20 7 6.2302 -8.0626 -2.8533 21 6 6.1257 -8.4522 -4.1619 22 1 5.3070 -8.0939 -4.7684 23 6 7.0721 -9.3077 -4.7090 24 7 8.0702 -9.7440 -3.9702 25 14 6.9293 -9.8397 -6.4939 26 1 6.9768 -8.6433 -7.3724 27 1 8.0551 -10.7473 -6.8316 28 1 5.6421 -10.5519 -6.6968 29 6 4.6950 -4.5111 -0.7770 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8901 36 1 1.6767 1.9563 0.8900 37 1 2.3950 -1.2363 4.3818 38 1 5.4191 -3.7596 1.9204 39 1 3.7137 -4.1380 2.2939 40 1 2.8006 -6.3615 1.8563 41 1 4.0180 -7.6589 1.9105 42 1 3.9843 -6.4163 3.1845 43 1 6.5646 -6.4220 -0.7527 44 1 5.5837 -7.8221 -0.2568 45 1 4.2461 -7.6212 -2.3351 46 1 5.2269 -6.2211 -2.8310 47 1 6.9656 -8.3841 -2.3088 48 1 8.7313 -10.3421 -4.3524 49 1 4.1466 -4.4071 -1.7132 50 1 5.7486 -4.2703 -0.9184 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104878919.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:59 Heat of formation + Delta-G solvation = -13.320830 kcal Electronic energy + Delta-G solvation = -29162.929330 eV Core-core repulsion = 25191.731056 eV Total energy + Delta-G solvation = -3971.198274 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.80516 -40.11291 -38.12820 -36.04630 -35.19739 -34.97187 -33.11919 -31.99464 -30.33787 -29.88980 -27.58899 -27.34523 -26.45948 -24.80665 -23.74478 -23.42127 -22.33848 -20.97693 -20.72121 -20.00991 -19.73017 -17.78418 -17.16278 -17.03295 -16.66813 -16.03956 -15.65060 -15.28192 -15.10426 -14.63511 -14.52233 -14.24673 -14.00851 -13.67079 -13.56477 -13.28723 -13.19094 -13.08366 -12.93305 -12.62303 -12.43949 -12.25963 -11.98479 -11.71357 -11.66925 -11.62230 -11.46520 -11.27304 -11.16284 -10.99746 -10.84095 -10.77013 -10.48487 -10.37614 -10.24132 -10.04399 -9.93009 -9.61306 -9.31184 -8.81504 -8.68604 -6.86808 -5.71755 -3.00050 0.79897 1.74280 2.19792 2.81593 3.11808 3.48030 3.51841 3.53256 3.67499 4.12428 4.29302 4.52702 4.55991 4.63590 4.65783 4.75081 4.82659 4.87170 5.14654 5.20898 5.22318 5.32576 5.35089 5.38840 5.44827 5.46855 5.54594 5.57249 5.60361 5.64751 5.71207 5.75996 5.79794 5.82121 5.87604 5.95737 5.98459 6.04038 6.10515 6.16148 6.25177 6.34960 6.42581 6.53197 6.90622 6.94420 7.10250 7.44772 7.74685 7.98791 8.47646 9.58398 10.17196 10.51777 11.51272 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017252 B = 0.002259 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.625538 B =12394.344308 C =13611.431458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.031 4.031 3 C -0.146 4.146 4 C 0.054 3.946 5 O -0.197 6.197 6 C 0.169 3.831 7 N -0.458 5.458 8 C -0.070 4.070 9 C 0.617 3.383 10 O -0.537 6.537 11 N -0.603 5.603 12 C 0.106 3.894 13 C -0.105 4.105 14 H 0.087 0.913 15 C -0.140 4.140 16 C -0.091 4.091 17 H 0.083 0.917 18 C -0.114 4.114 19 C 0.152 3.848 20 N -0.734 5.734 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.109 3.891 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.136 0.864 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.254 0.746 38 H 0.064 0.936 39 H 0.097 0.903 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.017 0.983 46 H 0.019 0.981 47 H 0.383 0.617 48 H 0.255 0.745 49 H 0.088 0.912 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.956 21.137 19.331 31.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.050 4.050 3 C -0.203 4.203 4 C -0.003 4.003 5 O -0.083 6.083 6 C -0.059 4.059 7 N -0.187 5.187 8 C -0.190 4.190 9 C 0.405 3.595 10 O -0.415 6.415 11 N -0.334 5.334 12 C -0.017 4.017 13 C -0.125 4.125 14 H 0.105 0.895 15 C -0.197 4.197 16 C -0.111 4.111 17 H 0.101 0.899 18 C -0.152 4.152 19 C 0.024 3.976 20 N -0.378 5.378 21 C -0.369 4.369 22 H 0.087 0.913 23 C -0.211 4.211 24 N -0.584 5.584 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.012 4.012 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.153 0.847 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.269 0.731 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.035 0.965 46 H 0.037 0.963 47 H 0.217 0.783 48 H 0.065 0.935 49 H 0.107 0.893 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.851 20.904 18.791 31.336 hybrid contribution -0.018 -0.017 -0.632 0.633 sum -13.869 20.887 18.159 30.957 Atomic orbital electron populations 1.21853 0.93050 1.02686 1.02738 1.20362 0.96823 0.96479 0.91304 1.21852 1.01675 0.94058 1.02737 1.23798 0.97015 0.95347 0.84105 1.84353 1.59089 1.48659 1.16191 1.28071 0.93507 0.85442 0.98901 1.70833 1.21030 1.25521 1.01364 1.21408 1.06464 0.99141 0.91950 1.16258 0.77793 0.79212 0.86199 1.90754 1.59866 1.67442 1.23454 1.48517 1.48869 1.26193 1.09816 1.22415 1.01074 0.92309 0.85882 1.22207 1.00865 0.93838 0.95545 0.89489 1.21809 0.98796 0.99903 0.99205 1.22280 1.00908 0.94340 0.93553 0.89868 1.21722 0.97651 0.98564 0.97291 1.20681 0.92912 0.93432 0.90577 1.42362 1.29308 1.55324 1.10823 1.19204 1.07710 1.22284 0.87707 0.91262 1.24740 0.97646 1.00562 0.98198 1.69650 1.15243 1.37953 1.35575 0.86260 0.76862 0.78138 0.84903 1.21261 1.21707 1.21296 1.22642 0.98717 0.88253 0.91601 0.92280 0.90973 0.92116 0.84666 0.92137 0.90987 0.92273 0.73053 0.91786 0.88502 0.92799 0.91994 0.92613 0.91619 0.91358 0.96484 0.96328 0.78337 0.93521 0.89328 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.18 37.16 0.34 -0.73 16 2 C -0.03 -0.29 3.24 -91.77 -0.30 -0.58 16 3 C -0.15 -1.06 9.18 37.16 0.34 -0.72 16 4 C 0.05 0.56 5.95 -35.08 -0.21 0.35 16 5 O -0.20 -1.67 10.73 6.53 0.07 -1.60 16 6 C 0.17 1.17 13.19 51.96 0.69 1.86 16 7 N -0.46 -4.70 8.55 -11.48 -0.10 -4.80 16 8 C -0.07 -0.85 6.84 -83.02 -0.57 -1.42 16 9 C 0.62 8.91 7.89 -12.53 -0.10 8.81 16 10 O -0.54 -8.82 14.67 5.26 0.08 -8.75 16 11 N -0.60 -8.13 3.29 -171.25 -0.56 -8.69 16 12 C 0.11 1.19 5.93 -2.98 -0.02 1.18 16 13 C -0.11 -1.15 3.17 -89.25 -0.28 -1.44 16 14 H 0.09 0.92 7.85 -51.92 -0.41 0.51 16 15 C -0.14 -1.37 8.90 37.15 0.33 -1.04 16 16 C -0.09 -1.20 2.58 -88.94 -0.23 -1.43 16 17 H 0.08 1.14 7.86 -51.93 -0.41 0.73 16 18 C -0.11 -1.80 4.70 -26.74 -0.13 -1.93 16 19 C 0.15 3.10 6.15 -4.04 -0.02 3.07 16 20 N -0.73 -19.11 5.60 -59.91 -0.34 -19.45 16 21 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 22 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 23 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 24 N -0.94 -28.80 13.06 55.49 0.72 -28.07 16 25 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 C 0.11 1.53 5.92 -2.32 -0.01 1.51 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.14 1.52 5.52 -51.93 -0.29 1.23 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.43 8.14 -51.92 -0.42 0.00 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.25 0.40 8.06 -52.49 -0.42 -0.03 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.10 1.07 5.69 -51.93 -0.30 0.77 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 1.04 7.99 -51.92 -0.41 0.63 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.02 0.39 7.67 -51.93 -0.40 -0.01 16 47 H 0.38 10.38 7.67 -40.82 -0.31 10.07 16 48 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 49 H 0.09 1.35 7.83 -51.93 -0.41 0.95 16 50 H 0.08 1.09 7.93 -51.93 -0.41 0.67 16 LS Contribution 402.97 15.07 6.07 6.07 Total: -1.00 -34.35 402.97 -7.88 -42.22 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -8.38 Total: 5.25 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -0.41 Total: -0.06 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: -0.27 Total: -61.01 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.15 Total: -10.35 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.35 -7.88 -42.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104878919.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.902 kcal (2) G-P(sol) polarization free energy of solvation -34.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds