Wall clock time and date at job start Tue Mar 31 2020 18:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47169 * 2 1 4 4 C 1.50705 * 109.46975 * 119.99900 * 2 1 3 5 5 O 1.34254 * 126.52457 * 300.02503 * 4 2 1 6 6 C 1.34045 * 108.22707 * 179.73775 * 5 4 2 7 7 N 1.29937 * 109.24424 * 0.02562 * 6 5 4 8 8 C 1.36071 * 108.47675 * 359.97438 * 7 6 5 9 9 C 1.47421 * 126.44773 * 180.02562 * 8 7 6 10 10 O 1.21616 * 119.99747 * 179.97438 * 9 8 7 11 11 N 1.34768 * 120.00030 * 359.97438 * 9 8 7 12 12 C 1.47489 * 127.03734 * 0.02562 * 11 9 8 13 13 C 1.54000 * 107.08320 * 154.51885 * 12 11 9 14 14 H 1.09009 * 110.32411 * 120.19957 * 13 12 11 15 15 C 1.52995 * 110.32690 * 242.30988 * 13 12 11 16 16 C 1.54616 * 105.04767 * 1.31142 * 13 12 11 17 17 H 1.09001 * 110.73675 * 263.32840 * 16 13 12 18 18 C 1.52993 * 110.74326 * 140.18716 * 16 13 12 19 19 C 1.52996 * 109.47493 * 174.99722 * 18 16 13 20 20 N 1.46501 * 109.47305 * 179.97438 * 19 18 16 21 21 C 1.36937 * 119.99785 * 180.02562 * 20 19 18 22 22 H 1.07997 * 120.00280 * 359.97438 * 21 20 19 23 23 C 1.38810 * 119.99881 * 179.97438 * 21 20 19 24 24 N 1.31620 * 120.00206 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00184 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46962 * 60.00153 * 25 23 21 27 27 H 1.48496 * 109.47489 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47394 * 300.00465 * 25 23 21 29 29 C 1.48124 * 127.03399 * 179.71083 * 11 9 8 30 30 H 1.09000 * 109.47568 * 299.99969 * 1 2 3 31 31 H 1.09000 * 109.47237 * 60.00551 * 1 2 3 32 32 H 1.09006 * 109.47348 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47115 * 239.99749 * 2 1 3 34 34 H 1.09001 * 109.47209 * 180.02562 * 3 2 1 35 35 H 1.09008 * 109.46742 * 300.00127 * 3 2 1 36 36 H 1.08999 * 109.47307 * 59.99867 * 3 2 1 37 37 H 1.07999 * 125.38200 * 179.97438 * 6 5 4 38 38 H 1.08998 * 109.91082 * 273.88403 * 12 11 9 39 39 H 1.08998 * 109.90746 * 35.15576 * 12 11 9 40 40 H 1.09001 * 109.46985 * 58.54983 * 15 13 12 41 41 H 1.09004 * 109.47486 * 178.54809 * 15 13 12 42 42 H 1.08998 * 109.47442 * 298.54792 * 15 13 12 43 43 H 1.09008 * 109.46812 * 294.99896 * 18 16 13 44 44 H 1.09001 * 109.47479 * 54.99541 * 18 16 13 45 45 H 1.08998 * 109.47258 * 300.00018 * 19 18 16 46 46 H 1.09001 * 109.46906 * 59.99467 * 19 18 16 47 47 H 0.96994 * 120.00015 * 359.97438 * 20 19 18 48 48 H 0.97000 * 120.00293 * 179.97438 * 24 23 21 49 49 H 1.09005 * 110.65583 * 337.76176 * 29 11 9 50 50 H 1.08996 * 110.66621 * 100.87876 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.7897 -0.3681 2.5058 6 6 2.4076 -1.2518 3.3020 7 7 3.0252 -2.1295 2.5695 8 6 2.8136 -1.8243 1.2604 9 6 3.3329 -2.5616 0.0942 10 8 3.0691 -2.1832 -1.0311 11 7 4.0998 -3.6549 0.2751 12 6 4.5130 -4.2474 1.5609 13 6 4.7879 -5.7406 1.3034 14 1 5.8214 -5.9835 1.5508 15 6 3.8287 -6.6066 2.1226 16 6 4.5366 -5.9401 -0.2091 17 1 3.5290 -6.3162 -0.3866 18 6 5.5790 -6.8839 -0.8117 19 6 5.2316 -7.1593 -2.2761 20 7 6.2302 -8.0626 -2.8533 21 6 6.1257 -8.4522 -4.1619 22 1 5.3070 -8.0939 -4.7684 23 6 7.0721 -9.3077 -4.7090 24 7 8.0702 -9.7440 -3.9702 25 14 6.9293 -9.8397 -6.4939 26 1 6.9768 -8.6433 -7.3724 27 1 8.0551 -10.7473 -6.8316 28 1 5.6421 -10.5519 -6.6968 29 6 4.6950 -4.5111 -0.7770 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8901 36 1 1.6767 1.9563 0.8900 37 1 2.3950 -1.2363 4.3818 38 1 5.4191 -3.7596 1.9204 39 1 3.7137 -4.1380 2.2939 40 1 2.8006 -6.3615 1.8563 41 1 4.0180 -7.6589 1.9105 42 1 3.9843 -6.4163 3.1845 43 1 6.5646 -6.4220 -0.7527 44 1 5.5837 -7.8221 -0.2568 45 1 4.2461 -7.6212 -2.3351 46 1 5.2269 -6.2211 -2.8310 47 1 6.9656 -8.3841 -2.3088 48 1 8.7313 -10.3421 -4.3524 49 1 4.1466 -4.4071 -1.7132 50 1 5.7486 -4.2703 -0.9184 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104878919.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:58 Heat of formation + Delta-G solvation = -36.144776 kcal Electronic energy + Delta-G solvation = -29163.919050 eV Core-core repulsion = 25191.731056 eV Total energy + Delta-G solvation = -3972.187995 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.50138 -41.17453 -39.23125 -36.95903 -36.61290 -35.86016 -34.53696 -33.43547 -31.84796 -30.79165 -28.74990 -28.15968 -27.40147 -26.27206 -24.80405 -24.34569 -23.74921 -22.11050 -21.68998 -21.09407 -20.58269 -19.17942 -18.67969 -17.85653 -17.51706 -17.07447 -16.66719 -16.58753 -16.17800 -15.82057 -15.57297 -15.40872 -15.28209 -15.03732 -14.71029 -14.51003 -14.34411 -14.15876 -14.00173 -13.58552 -13.27310 -13.14308 -13.12524 -12.86185 -12.69700 -12.67973 -12.47193 -12.43591 -12.29208 -12.28253 -12.18288 -12.13223 -11.93118 -11.72757 -11.57578 -11.50764 -11.21915 -11.03323 -10.92317 -10.11807 -9.70226 -9.01106 -7.96215 -5.25262 0.00189 1.03991 1.46090 1.49092 1.49538 1.55724 1.86997 2.14494 2.55297 3.00420 3.36817 3.40177 3.45509 3.55947 3.70245 3.75653 3.93684 4.03385 4.10290 4.16700 4.24697 4.29782 4.45872 4.49060 4.50759 4.56224 4.61511 4.67435 4.68915 4.74026 4.79163 4.82995 4.85295 4.90139 4.91096 4.96233 5.05584 5.09584 5.16574 5.22384 5.23802 5.28875 5.30350 5.36928 5.40085 5.48164 5.54852 6.26609 6.32622 6.48883 6.93218 7.32563 8.08574 8.32694 9.27094 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017252 B = 0.002259 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.625538 B =12394.344308 C =13611.431458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.035 4.035 3 C -0.140 4.140 4 C 0.057 3.943 5 O -0.194 6.194 6 C 0.195 3.805 7 N -0.485 5.485 8 C -0.098 4.098 9 C 0.607 3.393 10 O -0.570 6.570 11 N -0.606 5.606 12 C 0.111 3.889 13 C -0.097 4.097 14 H 0.097 0.903 15 C -0.136 4.136 16 C -0.081 4.081 17 H 0.079 0.921 18 C -0.098 4.098 19 C 0.150 3.850 20 N -0.747 5.747 21 C -0.250 4.250 22 H 0.072 0.928 23 C -0.075 4.075 24 N -0.968 5.968 25 Si 0.974 3.026 26 H -0.279 1.279 27 H -0.292 1.292 28 H -0.277 1.277 29 C 0.109 3.891 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.048 0.952 33 H 0.108 0.892 34 H 0.048 0.952 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.306 0.694 38 H 0.070 0.930 39 H 0.104 0.896 40 H 0.048 0.952 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.015 0.985 46 H 0.015 0.985 47 H 0.375 0.625 48 H 0.253 0.747 49 H 0.067 0.933 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.030 22.202 21.327 34.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.054 4.054 3 C -0.197 4.197 4 C -0.001 4.001 5 O -0.080 6.080 6 C -0.033 4.033 7 N -0.213 5.213 8 C -0.216 4.216 9 C 0.397 3.603 10 O -0.451 6.451 11 N -0.336 5.336 12 C -0.011 4.011 13 C -0.117 4.117 14 H 0.115 0.885 15 C -0.193 4.193 16 C -0.100 4.100 17 H 0.097 0.903 18 C -0.136 4.136 19 C 0.024 3.976 20 N -0.390 5.390 21 C -0.382 4.382 22 H 0.090 0.910 23 C -0.267 4.267 24 N -0.619 5.619 25 Si 0.803 3.197 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.204 1.204 29 C -0.014 4.014 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.067 0.933 33 H 0.126 0.874 34 H 0.067 0.933 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.321 0.679 38 H 0.089 0.911 39 H 0.122 0.878 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.033 0.967 46 H 0.033 0.967 47 H 0.207 0.793 48 H 0.061 0.939 49 H 0.086 0.914 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.945 21.975 20.808 33.753 hybrid contribution 0.270 -0.278 -1.175 1.238 sum -14.676 21.697 19.633 32.735 Atomic orbital electron populations 1.21824 0.91604 1.02293 1.04028 1.20351 0.97982 0.97086 0.89985 1.21823 1.00898 0.92991 1.04025 1.23917 0.96290 0.94772 0.85111 1.84388 1.59212 1.48930 1.15450 1.29276 0.90475 0.83253 1.00318 1.70771 1.22814 1.27153 1.00583 1.21173 1.08163 1.00131 0.92174 1.16704 0.77557 0.79316 0.86710 1.90728 1.61083 1.68365 1.24935 1.48611 1.48620 1.26007 1.10407 1.22491 1.01514 0.92128 0.84940 1.22191 1.01903 0.93974 0.93583 0.88469 1.21781 0.98011 0.99364 1.00139 1.22123 0.99687 0.92939 0.95299 0.90297 1.21544 0.98427 0.99375 0.94233 1.20836 0.91540 0.91983 0.93281 1.42575 1.30116 1.56077 1.10198 1.19594 1.07582 1.21979 0.89026 0.91045 1.25584 0.97574 1.01086 1.02502 1.69802 1.16022 1.38752 1.37304 0.85205 0.76914 0.77736 0.79872 1.20493 1.21782 1.20351 1.22548 0.98370 0.89138 0.91299 0.90989 0.89654 0.93322 0.87369 0.93298 0.89661 0.90991 0.67944 0.91136 0.87822 0.93318 0.92179 0.90616 0.91500 0.90965 0.96671 0.96678 0.79282 0.93875 0.91413 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.18 71.98 0.66 -1.27 16 2 C -0.04 -0.64 3.24 -11.54 -0.04 -0.68 16 3 C -0.14 -1.92 9.18 71.98 0.66 -1.26 16 4 C 0.06 1.13 5.95 25.19 0.15 1.28 16 5 O -0.19 -2.82 10.73 0.45 0.00 -2.82 16 6 C 0.20 2.08 13.19 130.52 1.72 3.80 16 7 N -0.48 -9.06 8.55 -305.15 -2.61 -11.67 16 8 C -0.10 -2.37 6.84 40.41 0.28 -2.09 16 9 C 0.61 18.17 7.89 86.66 0.68 18.85 16 10 O -0.57 -19.97 14.67 -4.08 -0.06 -20.03 16 11 N -0.61 -16.58 3.29 -813.96 -2.68 -19.26 16 12 C 0.11 2.37 5.93 86.53 0.51 2.89 16 13 C -0.10 -1.99 3.17 -9.91 -0.03 -2.02 16 14 H 0.10 1.84 7.85 -2.38 -0.02 1.82 16 15 C -0.14 -2.39 8.90 71.98 0.64 -1.75 16 16 C -0.08 -2.11 2.58 -9.71 -0.03 -2.13 16 17 H 0.08 2.15 7.86 -2.39 -0.02 2.13 16 18 C -0.10 -3.07 4.70 30.59 0.14 -2.93 16 19 C 0.15 6.23 6.15 86.38 0.53 6.76 16 20 N -0.75 -39.48 5.60 -343.46 -1.92 -41.40 16 21 C -0.25 -14.55 9.99 84.03 0.84 -13.71 16 22 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 23 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 24 N -0.97 -60.32 13.06 21.65 0.28 -60.03 16 25 Si 0.97 47.31 29.55 68.60 2.03 49.33 16 26 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 27 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 28 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 29 C 0.11 3.12 5.92 86.61 0.51 3.64 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.11 2.60 5.52 -2.39 -0.01 2.59 16 34 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.31 -0.61 8.06 -2.91 -0.02 -0.63 16 38 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.10 2.12 5.69 -2.39 -0.01 2.10 16 40 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.07 2.10 7.99 -2.38 -0.02 2.08 16 44 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.02 0.64 8.14 -2.39 -0.02 0.63 16 46 H 0.02 0.65 7.67 -2.39 -0.02 0.63 16 47 H 0.38 20.70 7.67 -92.71 -0.71 19.99 16 48 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 49 H 0.07 2.21 7.83 -2.38 -0.02 2.19 16 50 H 0.08 2.21 7.93 -2.39 -0.02 2.19 16 Total: -1.00 -75.83 402.97 2.97 -72.86 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.22 Total: 27.61 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 7.71 Total: 5.41 kcal Atomic # 7 Polarization: -125.44 SS G_CDS: -6.93 Total: -132.37 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.06 Total: -22.85 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.33 kcal Total: -75.83 2.97 -72.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104878919.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.719 kcal (2) G-P(sol) polarization free energy of solvation -75.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds