Wall clock time and date at job start Tue Mar 31 2020 18:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.91825 * 2 1 4 4 C 1.54908 * 111.00509 * 236.09279 * 2 1 3 5 5 N 1.47419 * 104.83344 * 204.91880 * 4 2 1 6 6 C 1.34779 * 125.64884 * 204.09221 * 5 4 2 7 7 O 1.21616 * 120.00220 * 175.06467 * 6 5 4 8 8 C 1.47104 * 119.99972 * 355.07233 * 6 5 4 9 9 C 1.32622 * 124.61531 * 284.84398 * 8 6 5 10 10 C 1.51108 * 110.75700 * 180.02562 * 9 8 6 11 11 C 1.54585 * 104.84100 * 16.59873 * 10 9 8 12 12 C 1.51110 * 124.62557 * 104.54491 * 8 6 5 13 13 C 1.47026 * 108.70479 * 24.12841 * 5 4 2 14 14 C 1.54320 * 107.26862 * 358.94402 * 13 5 4 15 15 H 1.09002 * 110.72206 * 96.34778 * 14 13 5 16 16 C 1.53004 * 110.71658 * 219.44470 * 14 13 5 17 17 N 1.46901 * 109.46987 * 293.54381 * 16 14 13 18 18 C 1.46898 * 110.99862 * 180.02562 * 17 16 14 19 19 C 1.50706 * 109.46884 * 180.02562 * 18 17 16 20 20 O 1.21298 * 120.00034 * 359.97438 * 19 18 17 21 21 N 1.34776 * 119.99816 * 179.97438 * 19 18 17 22 22 C 1.37097 * 119.99987 * 179.97438 * 21 19 18 23 23 H 1.08005 * 119.99932 * 0.02562 * 22 21 19 24 24 C 1.38944 * 119.99958 * 180.02562 * 22 21 19 25 25 N 1.31412 * 120.00262 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99876 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47134 * 359.97438 * 26 24 22 28 28 H 1.48506 * 109.46914 * 240.00326 * 26 24 22 29 29 H 1.48494 * 109.47105 * 120.00168 * 26 24 22 30 30 H 1.09001 * 109.47068 * 296.10011 * 1 2 3 31 31 H 1.08997 * 109.47106 * 56.10369 * 1 2 3 32 32 H 1.09002 * 109.47005 * 176.10078 * 1 2 3 33 33 H 1.09003 * 110.36789 * 86.07948 * 4 2 1 34 34 H 1.09004 * 110.46003 * 323.80338 * 4 2 1 35 35 H 1.07997 * 124.62154 * 359.97438 * 9 8 6 36 36 H 1.09001 * 110.36427 * 135.43911 * 10 9 8 37 37 H 1.09000 * 110.36284 * 257.76087 * 10 9 8 38 38 H 1.09002 * 110.98224 * 93.07177 * 11 10 9 39 39 H 1.08993 * 110.98053 * 216.87405 * 11 10 9 40 40 H 1.08997 * 110.36267 * 282.23982 * 12 8 6 41 41 H 1.09003 * 110.36204 * 44.56058 * 12 8 6 42 42 H 1.09000 * 109.88042 * 239.52348 * 13 5 4 43 43 H 1.08998 * 110.00906 * 118.42908 * 13 5 4 44 44 H 1.08999 * 109.46478 * 173.54628 * 16 14 13 45 45 H 1.08993 * 109.47147 * 53.54652 * 16 14 13 46 46 H 1.00909 * 110.99947 * 303.95600 * 17 16 14 47 47 H 1.08994 * 109.47425 * 59.99888 * 18 17 16 48 48 H 1.09000 * 109.46880 * 299.99591 * 18 17 16 49 49 H 0.97001 * 120.00254 * 0.02562 * 21 19 18 50 50 H 0.96998 * 119.99486 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 3.4271 -1.2432 -0.7732 6 6 4.4476 -1.5618 -1.5939 7 8 5.5413 -1.8237 -1.1309 8 6 4.2387 -1.5926 -3.0497 9 6 3.5948 -2.5537 -3.6982 10 6 3.5650 -2.2713 -5.1823 11 6 4.6566 -1.1994 -5.4034 12 6 4.7228 -0.5304 -4.0093 13 6 3.4674 -1.2741 0.6962 14 6 2.0861 -0.8079 1.2023 15 1 1.4478 -1.6632 1.4241 16 6 2.2350 0.0877 2.4338 17 7 2.7629 -0.7032 3.5535 18 6 2.9188 0.1258 4.7562 19 6 3.4618 -0.7178 5.8808 20 8 3.6954 -1.8940 5.6984 21 7 3.6878 -0.1653 7.0892 22 6 4.1812 -0.9328 8.1124 23 1 4.3893 -1.9801 7.9500 24 6 4.4137 -0.3633 9.3583 25 7 4.1601 0.9108 9.5560 26 14 5.0867 -1.4090 10.7523 27 1 5.2853 -2.8013 10.2754 28 1 4.1237 -1.4061 11.8827 29 1 6.3855 -0.8510 11.2070 30 1 -0.3633 0.4521 0.9229 31 1 -0.3633 0.5731 -0.8530 32 1 -0.3633 -1.0253 -0.0699 33 1 2.1560 -0.1722 -2.0837 34 1 1.4525 -1.6705 -1.4042 35 1 3.1528 -3.4205 -3.2295 36 1 3.8008 -3.1745 -5.7451 37 1 2.5889 -1.8847 -5.4753 38 1 5.6089 -1.6604 -5.6657 39 1 4.3499 -0.4810 -6.1635 40 1 4.0692 0.3410 -3.9715 41 1 5.7488 -0.2467 -3.7749 42 1 4.2426 -0.5997 1.0600 43 1 3.6661 -2.2884 1.0425 44 1 1.2618 0.4970 2.7051 45 1 2.9223 0.9032 2.2091 46 1 2.1764 -1.5031 3.7395 47 1 1.9503 0.5350 5.0434 48 1 3.6108 0.9417 4.5478 49 1 3.5006 0.7752 7.2351 50 1 3.8102 1.4536 8.8322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106005314.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:13 Heat of formation + Delta-G solvation = -85.651585 kcal Electronic energy + Delta-G solvation = -28413.022052 eV Core-core repulsion = 24438.687281 eV Total energy + Delta-G solvation = -3974.334771 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.47161 -40.36516 -39.57065 -38.49721 -36.87216 -36.11985 -33.98869 -33.15851 -31.75062 -30.44605 -29.33946 -28.35017 -27.33647 -26.50876 -25.15452 -23.12147 -22.01425 -21.68719 -21.52821 -21.04777 -19.99221 -19.42371 -18.31041 -17.91928 -17.53919 -16.99728 -16.81063 -16.72552 -16.20872 -15.72270 -15.65993 -15.52381 -15.32650 -14.97981 -14.49586 -14.34583 -14.12971 -13.85021 -13.70456 -13.59328 -13.37904 -13.25707 -13.17944 -12.94265 -12.84668 -12.72734 -12.66745 -12.47228 -12.10683 -12.03648 -11.98317 -11.90564 -11.88248 -11.70774 -11.54606 -11.52657 -11.11053 -10.43908 -10.12517 -9.89658 -9.80059 -9.38058 -8.95239 -6.09006 0.73925 1.43060 1.50796 1.52330 1.80398 1.94841 1.99001 2.37957 2.75861 3.14284 3.24299 3.39970 3.47778 3.62232 3.70359 3.78996 4.02716 4.09978 4.15041 4.17804 4.29582 4.30907 4.31914 4.40293 4.45140 4.47810 4.57865 4.63544 4.68619 4.72942 4.78096 4.85901 4.86452 4.89356 4.97249 5.04642 5.11075 5.14670 5.19280 5.30411 5.32345 5.37415 5.47345 5.56978 5.57521 5.90656 5.96845 6.32677 6.38488 6.56134 6.72577 6.96489 7.42034 7.90697 8.52770 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021438 B = 0.001886 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.795456 B =14843.006839 C =15636.549142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 H 0.092 0.908 4 C 0.105 3.895 5 N -0.613 5.613 6 C 0.570 3.430 7 O -0.595 6.595 8 C -0.196 4.196 9 C -0.100 4.100 10 C -0.096 4.096 11 C -0.118 4.118 12 C -0.079 4.079 13 C 0.120 3.880 14 C -0.081 4.081 15 H 0.093 0.907 16 C 0.074 3.926 17 N -0.689 5.689 18 C 0.067 3.933 19 C 0.440 3.560 20 O -0.619 6.619 21 N -0.587 5.587 22 C -0.411 4.411 23 H 0.071 0.929 24 C -0.042 4.042 25 N -0.916 5.916 26 Si 1.138 2.862 27 H -0.282 1.282 28 H -0.269 1.269 29 H -0.272 1.272 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.132 0.868 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.068 0.932 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.044 0.956 44 H 0.060 0.940 45 H 0.074 0.926 46 H 0.346 0.654 47 H 0.074 0.926 48 H 0.101 0.899 49 H 0.385 0.615 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.967 2.299 -32.074 34.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.108 4.108 3 H 0.110 0.890 4 C -0.016 4.016 5 N -0.344 5.344 6 C 0.360 3.640 7 O -0.477 6.477 8 C -0.199 4.199 9 C -0.119 4.119 10 C -0.133 4.133 11 C -0.156 4.156 12 C -0.116 4.116 13 C -0.002 4.002 14 C -0.100 4.100 15 H 0.111 0.889 16 C -0.055 4.055 17 N -0.322 5.322 18 C -0.065 4.065 19 C 0.228 3.772 20 O -0.505 6.505 21 N -0.226 5.226 22 C -0.540 4.540 23 H 0.089 0.911 24 C -0.240 4.240 25 N -0.556 5.556 26 Si 0.958 3.042 27 H -0.207 1.207 28 H -0.194 1.194 29 H -0.197 1.197 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.150 0.850 36 H 0.107 0.893 37 H 0.125 0.875 38 H 0.087 0.913 39 H 0.118 0.882 40 H 0.112 0.888 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.164 0.836 47 H 0.091 0.909 48 H 0.119 0.881 49 H 0.219 0.781 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.061 1.480 -30.597 32.243 hybrid contribution -0.812 0.301 -0.550 1.026 sum -10.873 1.781 -31.147 33.038 Atomic orbital electron populations 1.21693 0.91443 1.02979 1.03230 1.22384 0.97703 0.99035 0.91645 0.88990 1.22659 0.81159 0.99249 0.98546 1.48675 1.13495 1.65504 1.06759 1.18504 0.82435 0.75581 0.87471 1.90810 1.26474 1.51777 1.78601 1.21711 1.05348 1.02038 0.90756 1.24123 0.93939 0.96290 0.97519 1.21461 1.00805 1.00003 0.91015 1.22501 0.99403 0.98212 0.95469 1.21242 1.00956 0.96446 0.92967 1.21823 0.98859 1.00437 0.79128 1.22249 0.94100 0.99111 0.94586 0.88897 1.22024 0.99110 0.95391 0.88988 1.60049 1.56713 1.10270 1.05136 1.21516 1.01203 0.95184 0.88600 1.20960 0.83250 0.88811 0.84224 1.90507 1.57758 1.19012 1.83225 1.41996 1.58759 1.11735 1.10113 1.20571 1.44722 0.95985 0.92749 0.91124 1.27824 0.96487 0.98393 1.01322 1.70912 1.42938 1.06415 1.35288 0.82556 0.76771 0.72930 0.71950 1.20720 1.19379 1.19714 0.91749 0.90468 0.91834 0.88628 0.89663 0.85018 0.89294 0.87456 0.91295 0.88153 0.88768 0.92638 0.93353 0.93786 0.92218 0.90761 0.83561 0.90862 0.88064 0.78052 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.31 71.98 0.67 -0.34 16 2 C -0.09 -1.05 3.09 -9.40 -0.03 -1.08 16 3 H 0.09 1.07 8.05 -2.39 -0.02 1.05 16 4 C 0.11 1.37 6.11 86.86 0.53 1.90 16 5 N -0.61 -14.23 3.33 -816.05 -2.71 -16.94 16 6 C 0.57 16.10 7.60 86.57 0.66 16.75 16 7 O -0.60 -23.59 17.44 -4.08 -0.07 -23.66 16 8 C -0.20 -3.76 4.79 -18.57 -0.09 -3.85 16 9 C -0.10 -1.37 10.70 24.65 0.26 -1.10 16 10 C -0.10 -0.71 6.80 30.52 0.21 -0.51 16 11 C -0.12 -1.04 7.17 31.74 0.23 -0.81 16 12 C -0.08 -1.13 6.75 30.58 0.21 -0.93 16 13 C 0.12 3.23 6.29 86.73 0.55 3.78 16 14 C -0.08 -1.51 2.60 -9.60 -0.03 -1.53 16 15 H 0.09 1.66 8.04 -2.39 -0.02 1.64 16 16 C 0.07 1.54 5.00 86.30 0.43 1.97 16 17 N -0.69 -21.37 5.94 -517.94 -3.07 -24.44 16 18 C 0.07 2.28 6.17 85.56 0.53 2.80 16 19 C 0.44 21.38 7.82 87.66 0.69 22.06 16 20 O -0.62 -35.65 15.78 -3.08 -0.05 -35.69 16 21 N -0.59 -30.46 5.28 -306.97 -1.62 -32.09 16 22 C -0.41 -24.11 9.68 84.04 0.81 -23.30 16 23 H 0.07 4.49 7.16 -2.91 -0.02 4.47 16 24 C -0.04 -2.33 5.50 84.92 0.47 -1.86 16 25 N -0.92 -51.72 13.68 21.66 0.30 -51.42 16 26 Si 1.14 49.81 29.92 68.60 2.05 51.86 16 27 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 28 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 29 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.06 0.45 8.08 -2.39 -0.02 0.43 16 33 H 0.10 0.92 7.78 -2.39 -0.02 0.90 16 34 H 0.09 0.89 7.99 -2.38 -0.02 0.87 16 35 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 36 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.05 1.56 7.77 -2.39 -0.02 1.54 16 43 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.07 1.58 8.06 -2.39 -0.02 1.56 16 46 H 0.35 11.15 8.43 -89.69 -0.76 10.39 16 47 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 48 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 49 H 0.39 18.20 6.73 -92.71 -0.62 17.58 16 50 H 0.26 14.16 6.77 -92.71 -0.63 13.53 16 Total: -1.00 -83.50 408.68 0.61 -82.89 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: -0.30 Total: 35.53 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: 6.09 Total: 13.98 kcal Atomic # 7 Polarization: -117.78 SS G_CDS: -7.11 Total: -124.90 kcal Atomic # 8 Polarization: -59.24 SS G_CDS: -0.12 Total: -59.36 kcal Atomic # 14 Polarization: 49.81 SS G_CDS: 2.05 Total: 51.86 kcal Total: -83.50 0.61 -82.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106005314.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.762 kcal (2) G-P(sol) polarization free energy of solvation -83.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds