Wall clock time and date at job start Tue Mar 31 2020 18:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.46995 * 2 1 4 4 C 1.47192 * 109.47141 * 120.00631 * 2 1 3 5 5 C 2.64591 * 109.47218 * 120.00306 * 2 1 3 6 6 C 4.07802 * 109.47153 * 120.00285 * 2 1 3 7 7 O 1.21621 * 119.99495 * 70.72067 * 6 5 4 8 8 N 1.34763 * 120.00037 * 250.72007 * 6 5 4 9 9 C 1.47029 * 125.65063 * 180.02562 * 8 6 5 10 10 C 1.54316 * 107.27405 * 178.90415 * 9 8 6 11 11 H 1.08997 * 110.72018 * 96.34778 * 10 9 8 12 12 C 1.52997 * 110.72270 * 219.44474 * 10 9 8 13 13 N 1.46910 * 109.46942 * 293.54951 * 12 10 9 14 14 C 1.46892 * 110.99936 * 179.97438 * 13 12 10 15 15 C 1.50702 * 109.47256 * 179.97438 * 14 13 12 16 16 O 1.21293 * 119.99490 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00426 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00363 * 179.97438 * 17 15 14 19 19 H 1.08001 * 120.00037 * 0.02562 * 18 17 15 20 20 C 1.38945 * 120.00220 * 179.97438 * 18 17 15 21 21 N 1.31413 * 119.99901 * 179.72435 * 20 18 17 22 22 Si 1.86800 * 120.00194 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72227 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72075 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72111 * 22 20 18 26 26 C 1.55165 * 102.94446 * 337.80587 * 10 9 8 27 27 H 1.08996 * 110.99989 * 277.42911 * 26 10 9 28 28 C 1.52996 * 111.00281 * 153.57666 * 26 10 9 29 29 C 1.47426 * 125.65036 * 359.95712 * 8 6 5 30 30 H 1.09003 * 109.46947 * 299.99745 * 1 2 3 31 31 H 1.09005 * 109.46997 * 59.99685 * 1 2 3 32 32 H 1.08994 * 109.46967 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46947 * 240.00255 * 2 1 3 34 34 H 1.09000 * 109.47090 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.47505 * 300.00004 * 3 2 1 36 36 H 1.09003 * 109.47065 * 60.00327 * 3 2 1 37 37 H 1.08996 * 109.87810 * 59.48329 * 9 8 6 38 38 H 1.09002 * 110.00757 * 298.39714 * 9 8 6 39 39 H 1.08996 * 109.47845 * 173.54704 * 12 10 9 40 40 H 1.09004 * 109.47220 * 53.54320 * 12 10 9 41 41 H 1.00894 * 110.99941 * 56.04293 * 13 12 10 42 42 H 1.09000 * 109.47778 * 59.99479 * 14 13 12 43 43 H 1.09007 * 109.47317 * 299.99776 * 14 13 12 44 44 H 0.97000 * 120.00112 * 359.97438 * 17 15 14 45 45 H 0.96999 * 119.99993 * 180.27541 * 21 20 18 46 46 H 1.08997 * 109.47552 * 60.00386 * 28 26 10 47 47 H 1.09001 * 109.46589 * 180.02562 * 28 26 10 48 48 H 1.09001 * 109.47338 * 299.99942 * 28 26 10 49 49 H 1.08994 * 110.36880 * 323.00712 * 29 8 6 50 50 H 1.09005 * 110.36904 * 85.21868 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6940 1.2017 5 6 2.4121 -1.2474 2.1603 6 6 2.8894 -1.9226 3.3296 7 8 3.2768 -3.0728 3.2520 8 7 2.9094 -1.2833 4.5158 9 6 3.3722 -1.8543 5.7892 10 6 3.2368 -0.7527 6.8614 11 1 2.3009 -0.8609 7.4095 12 6 4.4293 -0.7803 7.8196 13 7 4.4020 -2.0251 8.5994 14 6 5.5352 -2.0869 9.5320 15 6 5.4735 -3.3742 10.3130 16 8 4.5736 -4.1624 10.1127 17 7 6.4175 -3.6493 11.2347 18 6 6.3610 -4.8202 11.9456 19 1 5.5602 -5.5224 11.7667 20 6 7.3346 -5.1040 12.8955 21 7 7.2773 -6.2239 13.5806 22 14 8.7201 -3.8898 13.2045 23 1 9.8628 -4.2046 12.3098 24 1 8.2409 -2.5114 12.9291 25 1 9.1579 -3.9880 14.6200 26 6 3.2378 0.5519 6.0214 27 1 4.2548 0.8581 5.7766 28 6 2.4898 1.6720 6.7471 29 6 2.4722 0.1048 4.7513 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 4.4148 -2.1598 5.7012 38 1 2.7562 -2.7120 6.0591 39 1 4.3724 0.0730 8.4953 40 1 5.3560 -0.7300 7.2479 41 1 4.3887 -2.8314 7.9931 42 1 5.4865 -1.2425 10.2196 43 1 6.4695 -2.0458 8.9719 44 1 7.1370 -3.0188 11.3952 45 1 7.9548 -6.4202 14.2466 46 1 2.9734 1.8718 7.7033 47 1 2.5054 2.5745 6.1361 48 1 1.4573 1.3676 6.9187 49 1 2.7409 0.7360 3.9044 50 1 1.3963 0.1397 4.9232 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106098002.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:55 Heat of formation + Delta-G solvation = -25.465736 kcal Electronic energy + Delta-G solvation = -27795.609419 eV Core-core repulsion = 23823.884502 eV Total energy + Delta-G solvation = -3971.724917 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.50711 -38.62478 -38.14553 -36.87316 -35.49517 -33.92100 -33.26824 -32.30088 -31.65696 -30.61341 -27.78239 -27.50152 -26.81984 -25.58390 -24.02870 -23.34873 -21.95045 -21.03418 -20.29230 -19.36902 -18.47302 -18.20167 -17.08787 -16.51257 -16.06126 -15.86274 -15.58179 -15.16089 -14.95419 -14.80717 -14.45008 -14.20187 -14.03564 -13.97464 -13.43280 -13.29750 -13.16800 -12.97486 -12.84765 -12.80447 -12.61991 -12.46004 -12.20064 -12.05410 -12.02178 -11.97787 -11.93769 -11.63806 -11.18439 -11.08229 -10.97945 -10.87144 -10.74268 -10.69160 -10.58309 -10.40212 -9.95893 -9.55714 -8.99221 -8.59106 -8.19758 -8.14330 -6.29310 -3.80743 1.25758 1.91158 2.63278 3.03448 3.07670 3.15925 3.22682 3.59315 3.75671 3.91329 4.09532 4.11728 4.25016 4.37183 4.51840 4.54209 4.59334 4.83391 4.90976 4.92001 4.99977 5.02749 5.05037 5.06958 5.20326 5.20843 5.23092 5.26412 5.35349 5.40565 5.46363 5.49519 5.56622 5.60374 5.61047 5.62649 5.73322 5.74940 5.82440 5.87035 5.91491 5.93998 6.10351 6.87208 7.04865 7.09702 7.53276 7.59905 7.77831 8.16462 8.61521 8.96877 9.44181 9.84511 10.83858 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023001 B = 0.001785 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.037813 B =15679.446355 C =16286.067895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.008 3.992 3 C -0.146 4.146 4 C -0.077 4.077 5 C -0.216 4.216 6 C 0.644 3.356 7 O -0.519 6.519 8 N -0.608 5.608 9 C 0.110 3.890 10 C -0.092 4.092 11 H 0.101 0.899 12 C 0.070 3.930 13 N -0.670 5.670 14 C 0.048 3.952 15 C 0.449 3.551 16 O -0.563 6.563 17 N -0.591 5.591 18 C -0.305 4.305 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.269 1.269 25 H -0.277 1.277 26 C -0.099 4.099 27 H 0.087 0.913 28 C -0.140 4.140 29 C 0.104 3.896 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.030 0.970 41 H 0.351 0.649 42 H 0.088 0.912 43 H 0.045 0.955 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.066 0.934 47 H 0.058 0.942 48 H 0.061 0.939 49 H 0.076 0.924 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.740 23.441 -24.685 35.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.010 4.010 3 C -0.203 4.203 4 C -0.080 4.080 5 C -0.219 4.219 6 C 0.433 3.567 7 O -0.396 6.396 8 N -0.341 5.341 9 C -0.012 4.012 10 C -0.111 4.111 11 H 0.119 0.881 12 C -0.060 4.060 13 N -0.303 5.303 14 C -0.085 4.085 15 C 0.235 3.765 16 O -0.445 6.445 17 N -0.230 5.230 18 C -0.434 4.434 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.521 5.521 22 Si 0.707 3.293 23 H -0.197 1.197 24 H -0.195 1.195 25 H -0.202 1.202 26 C -0.119 4.119 27 H 0.106 0.894 28 C -0.198 4.198 29 C -0.018 4.018 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.118 0.882 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.048 0.952 41 H 0.171 0.829 42 H 0.106 0.894 43 H 0.063 0.937 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.077 0.923 48 H 0.080 0.920 49 H 0.094 0.906 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.483 22.309 -24.266 34.589 hybrid contribution 2.002 0.633 -0.156 2.105 sum -8.481 22.942 -24.422 34.565 Atomic orbital electron populations 1.21844 0.92618 1.02959 1.02915 1.18515 0.96349 0.95219 0.90914 1.21847 1.01743 0.93791 1.02933 1.22599 0.93958 0.96274 0.95150 1.20573 1.04007 1.00642 0.96648 1.14268 0.78295 0.84452 0.79687 1.90903 1.47398 1.16384 1.84899 1.48229 1.63643 1.14654 1.07574 1.22140 1.00710 0.97115 0.81249 1.22374 1.01131 0.93088 0.94545 0.88076 1.21950 0.95263 0.94083 0.94689 1.60086 1.44204 1.04220 1.21757 1.21705 0.92226 0.98490 0.96062 1.19708 0.84503 0.88477 0.83817 1.90573 1.35547 1.49949 1.68433 1.42203 1.24870 1.20114 1.35847 1.19441 1.12445 0.95702 1.15794 0.86270 1.25037 0.97968 0.96660 0.96493 1.69624 1.35237 1.23232 1.24047 0.86665 0.82780 0.80949 0.78945 1.19690 1.19493 1.20179 1.22392 1.00226 0.95235 0.94036 0.89444 1.21702 1.00472 0.97111 1.00520 1.22460 0.99261 0.81875 0.98237 0.91916 0.91070 0.91893 0.88152 0.91984 0.91085 0.91919 0.91021 0.90093 0.90298 0.95170 0.82900 0.89406 0.93731 0.79705 0.91632 0.91547 0.92341 0.92042 0.90599 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.15 37.16 0.34 -0.26 16 2 C 0.01 0.04 3.30 -93.41 -0.31 -0.27 16 3 C -0.15 -0.54 9.15 37.15 0.34 -0.20 16 4 C -0.08 -0.68 12.56 -37.13 -0.47 -1.15 16 5 C -0.22 -2.47 12.49 -38.83 -0.49 -2.95 16 6 C 0.64 8.82 7.69 -14.34 -0.11 8.71 16 7 O -0.52 -9.18 17.41 5.26 0.09 -9.09 16 8 N -0.61 -6.78 3.33 -173.40 -0.58 -7.35 16 9 C 0.11 1.25 5.64 -3.06 -0.02 1.24 16 10 C -0.09 -0.85 2.67 -88.79 -0.24 -1.09 16 11 H 0.10 0.99 8.04 -51.93 -0.42 0.58 16 12 C 0.07 0.74 5.06 -3.82 -0.02 0.72 16 13 N -0.67 -10.03 6.13 -115.05 -0.70 -10.73 16 14 C 0.05 0.78 6.17 -4.98 -0.03 0.75 16 15 C 0.45 10.27 7.82 -10.99 -0.09 10.18 16 16 O -0.56 -15.30 15.78 5.55 0.09 -15.22 16 17 N -0.59 -14.18 5.09 -10.96 -0.06 -14.24 16 18 C -0.31 -8.73 10.16 -14.94 -0.15 -8.88 16 19 H 0.12 3.90 7.39 -52.49 -0.39 3.52 16 20 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 21 N -0.88 -25.98 13.96 55.50 0.77 -25.21 16 22 Si 0.88 19.48 27.74 -169.99 -4.72 14.76 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.27 -5.41 6.51 56.52 0.37 -5.04 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 C -0.10 -0.68 3.09 -88.48 -0.27 -0.96 16 27 H 0.09 0.59 8.05 -51.93 -0.42 0.17 16 28 C -0.14 -0.76 9.31 37.16 0.35 -0.41 16 29 C 0.10 0.80 6.14 -2.54 -0.02 0.78 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 36 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.07 0.88 7.77 -51.93 -0.40 0.48 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.03 0.30 8.06 -51.93 -0.42 -0.12 16 41 H 0.35 5.63 7.65 -39.29 -0.30 5.33 16 42 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.37 7.76 5.76 -40.82 -0.23 7.53 16 45 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 48 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 49 H 0.08 0.50 7.69 -51.93 -0.40 0.11 16 50 H 0.07 0.51 7.99 -51.93 -0.41 0.10 16 LS Contribution 416.66 15.07 6.28 6.28 Total: -1.00 -35.95 416.66 -8.57 -44.52 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -8.48 Total: 9.03 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -1.27 Total: 7.25 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: -0.56 Total: -57.53 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: 0.18 Total: -24.31 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.72 Total: 14.76 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -35.95 -8.57 -44.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106098002.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.057 kcal (2) G-P(sol) polarization free energy of solvation -35.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds