Wall clock time and date at job start Tue Mar 31 2020 18:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.46995 * 2 1 4 4 C 1.47192 * 109.47141 * 120.00631 * 2 1 3 5 5 C 2.64591 * 109.47218 * 120.00306 * 2 1 3 6 6 C 4.07802 * 109.47153 * 120.00285 * 2 1 3 7 7 O 1.21621 * 119.99495 * 70.72067 * 6 5 4 8 8 N 1.34763 * 120.00037 * 250.72007 * 6 5 4 9 9 C 1.47029 * 125.65063 * 180.02562 * 8 6 5 10 10 C 1.54316 * 107.27405 * 178.90415 * 9 8 6 11 11 H 1.08997 * 110.72018 * 96.34778 * 10 9 8 12 12 C 1.52997 * 110.72270 * 219.44474 * 10 9 8 13 13 N 1.46910 * 109.46942 * 293.54951 * 12 10 9 14 14 C 1.46892 * 110.99936 * 179.97438 * 13 12 10 15 15 C 1.50702 * 109.47256 * 179.97438 * 14 13 12 16 16 O 1.21293 * 119.99490 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00426 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00363 * 179.97438 * 17 15 14 19 19 H 1.08001 * 120.00037 * 0.02562 * 18 17 15 20 20 C 1.38945 * 120.00220 * 179.97438 * 18 17 15 21 21 N 1.31413 * 119.99901 * 179.72435 * 20 18 17 22 22 Si 1.86800 * 120.00194 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72227 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72075 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72111 * 22 20 18 26 26 C 1.55165 * 102.94446 * 337.80587 * 10 9 8 27 27 H 1.08996 * 110.99989 * 277.42911 * 26 10 9 28 28 C 1.52996 * 111.00281 * 153.57666 * 26 10 9 29 29 C 1.47426 * 125.65036 * 359.95712 * 8 6 5 30 30 H 1.09003 * 109.46947 * 299.99745 * 1 2 3 31 31 H 1.09005 * 109.46997 * 59.99685 * 1 2 3 32 32 H 1.08994 * 109.46967 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46947 * 240.00255 * 2 1 3 34 34 H 1.09000 * 109.47090 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.47505 * 300.00004 * 3 2 1 36 36 H 1.09003 * 109.47065 * 60.00327 * 3 2 1 37 37 H 1.08996 * 109.87810 * 59.48329 * 9 8 6 38 38 H 1.09002 * 110.00757 * 298.39714 * 9 8 6 39 39 H 1.08996 * 109.47845 * 173.54704 * 12 10 9 40 40 H 1.09004 * 109.47220 * 53.54320 * 12 10 9 41 41 H 1.00894 * 110.99941 * 56.04293 * 13 12 10 42 42 H 1.09000 * 109.47778 * 59.99479 * 14 13 12 43 43 H 1.09007 * 109.47317 * 299.99776 * 14 13 12 44 44 H 0.97000 * 120.00112 * 359.97438 * 17 15 14 45 45 H 0.96999 * 119.99993 * 180.27541 * 21 20 18 46 46 H 1.08997 * 109.47552 * 60.00386 * 28 26 10 47 47 H 1.09001 * 109.46589 * 180.02562 * 28 26 10 48 48 H 1.09001 * 109.47338 * 299.99942 * 28 26 10 49 49 H 1.08994 * 110.36880 * 323.00712 * 29 8 6 50 50 H 1.09005 * 110.36904 * 85.21868 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6940 1.2017 5 6 2.4121 -1.2474 2.1603 6 6 2.8894 -1.9226 3.3296 7 8 3.2768 -3.0728 3.2520 8 7 2.9094 -1.2833 4.5158 9 6 3.3722 -1.8543 5.7892 10 6 3.2368 -0.7527 6.8614 11 1 2.3009 -0.8609 7.4095 12 6 4.4293 -0.7803 7.8196 13 7 4.4020 -2.0251 8.5994 14 6 5.5352 -2.0869 9.5320 15 6 5.4735 -3.3742 10.3130 16 8 4.5736 -4.1624 10.1127 17 7 6.4175 -3.6493 11.2347 18 6 6.3610 -4.8202 11.9456 19 1 5.5602 -5.5224 11.7667 20 6 7.3346 -5.1040 12.8955 21 7 7.2773 -6.2239 13.5806 22 14 8.7201 -3.8898 13.2045 23 1 9.8628 -4.2046 12.3098 24 1 8.2409 -2.5114 12.9291 25 1 9.1579 -3.9880 14.6200 26 6 3.2378 0.5519 6.0214 27 1 4.2548 0.8581 5.7766 28 6 2.4898 1.6720 6.7471 29 6 2.4722 0.1048 4.7513 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 4.4148 -2.1598 5.7012 38 1 2.7562 -2.7120 6.0591 39 1 4.3724 0.0730 8.4953 40 1 5.3560 -0.7300 7.2479 41 1 4.3887 -2.8314 7.9931 42 1 5.4865 -1.2425 10.2196 43 1 6.4695 -2.0458 8.9719 44 1 7.1370 -3.0188 11.3952 45 1 7.9548 -6.4202 14.2466 46 1 2.9734 1.8718 7.7033 47 1 2.5054 2.5745 6.1361 48 1 1.4573 1.3676 6.9187 49 1 2.7409 0.7360 3.9044 50 1 1.3963 0.1397 4.9232 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106098002.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:54 Heat of formation + Delta-G solvation = -52.215575 kcal Electronic energy + Delta-G solvation = -27796.769379 eV Core-core repulsion = 23823.884502 eV Total energy + Delta-G solvation = -3972.884877 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.41225 -40.30785 -39.25665 -37.36906 -36.71284 -35.87868 -34.14892 -33.74564 -32.97806 -31.53989 -28.79273 -28.05892 -27.52992 -26.88202 -25.34128 -24.29622 -22.66491 -21.72393 -21.33341 -21.03842 -20.26933 -19.15544 -18.17333 -17.61266 -17.19926 -16.90368 -16.74613 -16.62299 -15.86392 -15.67791 -15.53952 -15.36291 -15.12240 -14.86907 -14.61663 -14.36289 -14.26487 -14.19985 -13.96103 -13.72288 -13.34178 -13.22661 -13.08586 -13.03809 -12.92241 -12.75112 -12.52296 -12.45733 -12.41701 -12.34573 -11.98237 -11.83611 -11.70380 -11.64465 -11.52109 -11.51642 -11.39662 -11.18785 -10.44730 -10.25583 -9.92479 -9.34962 -8.41723 -6.03094 0.37282 1.13151 1.29914 1.35764 1.44879 1.78576 1.95501 2.23083 2.33334 2.69544 2.91080 3.14708 3.29911 3.44184 3.51391 3.83687 4.01630 4.06268 4.10222 4.15975 4.16350 4.30149 4.33810 4.42474 4.43666 4.46747 4.51896 4.58888 4.67411 4.72787 4.79780 4.80139 4.87772 4.92144 4.94908 5.02641 5.11086 5.12273 5.14871 5.31662 5.33988 5.35240 5.50442 5.52300 5.89258 6.03478 6.11840 6.19515 6.31718 6.59257 6.78201 6.87570 7.39150 7.96445 8.76094 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023001 B = 0.001785 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.037813 B =15679.446355 C =16286.067895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.003 3.997 3 C -0.143 4.143 4 C -0.035 4.035 5 C -0.271 4.271 6 C 0.638 3.362 7 O -0.579 6.579 8 N -0.604 5.604 9 C 0.107 3.893 10 C -0.083 4.083 11 H 0.096 0.904 12 C 0.074 3.926 13 N -0.690 5.690 14 C 0.062 3.938 15 C 0.445 3.555 16 O -0.616 6.616 17 N -0.590 5.590 18 C -0.332 4.332 19 H 0.053 0.947 20 C -0.016 4.016 21 N -0.935 5.935 22 Si 0.967 3.033 23 H -0.258 1.258 24 H -0.228 1.228 25 H -0.274 1.274 26 C -0.085 4.085 27 H 0.097 0.903 28 C -0.137 4.137 29 C 0.101 3.899 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.116 0.884 34 H 0.057 0.943 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.101 0.899 40 H 0.043 0.957 41 H 0.339 0.661 42 H 0.121 0.879 43 H 0.076 0.924 44 H 0.391 0.609 45 H 0.279 0.721 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.060 0.940 49 H 0.091 0.909 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.704 28.963 -26.092 39.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.015 4.015 3 C -0.200 4.200 4 C -0.038 4.038 5 C -0.274 4.274 6 C 0.428 3.572 7 O -0.460 6.460 8 N -0.335 5.335 9 C -0.016 4.016 10 C -0.102 4.102 11 H 0.114 0.886 12 C -0.055 4.055 13 N -0.322 5.322 14 C -0.070 4.070 15 C 0.234 3.766 16 O -0.501 6.501 17 N -0.232 5.232 18 C -0.461 4.461 19 H 0.071 0.929 20 C -0.214 4.214 21 N -0.576 5.576 22 Si 0.787 3.213 23 H -0.183 1.183 24 H -0.151 1.151 25 H -0.200 1.200 26 C -0.104 4.104 27 H 0.115 0.885 28 C -0.194 4.194 29 C -0.021 4.021 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.071 0.929 33 H 0.133 0.867 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.119 0.881 40 H 0.061 0.939 41 H 0.158 0.842 42 H 0.138 0.862 43 H 0.094 0.906 44 H 0.226 0.774 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.094 0.906 48 H 0.079 0.921 49 H 0.110 0.890 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.467 27.914 -25.672 39.088 hybrid contribution 1.515 -1.137 0.175 1.903 sum -7.952 26.777 -25.497 37.820 Atomic orbital electron populations 1.21862 0.91509 1.02706 1.04102 1.18897 0.97148 0.96037 0.89416 1.21857 1.01486 0.92522 1.04148 1.23468 0.91346 0.94409 0.94557 1.20341 1.06623 1.02877 0.97543 1.14640 0.77637 0.83984 0.80905 1.90848 1.50371 1.18867 1.85960 1.48342 1.62450 1.15975 1.06733 1.22120 0.99440 0.97578 0.82413 1.22301 1.00594 0.93620 0.93721 0.88598 1.22057 0.96103 0.92454 0.94879 1.60119 1.44058 1.05561 1.22455 1.21647 0.94167 0.94866 0.96323 1.21084 0.82730 0.90017 0.82816 1.90553 1.37510 1.52376 1.69652 1.42017 1.26082 1.19120 1.35969 1.19015 1.11878 0.97071 1.18113 0.92922 1.26154 1.01085 0.99108 0.95083 1.69813 1.36873 1.26015 1.24861 0.85333 0.77767 0.79331 0.78873 1.18279 1.15141 1.19952 1.22370 1.00958 0.94271 0.92838 0.88502 1.21695 1.00109 0.96887 1.00716 1.22731 1.00024 0.79928 0.99371 0.91981 0.88686 0.92905 0.86656 0.92419 0.88893 0.91752 0.92217 0.92617 0.88087 0.93904 0.84244 0.86162 0.90599 0.77373 0.91137 0.91167 0.90615 0.92130 0.89040 0.89784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.15 71.98 0.66 -0.17 16 2 C 0.00 0.02 3.30 -12.60 -0.04 -0.02 16 3 C -0.14 -0.61 9.15 71.98 0.66 0.05 16 4 C -0.04 -0.59 12.56 31.12 0.39 -0.20 16 5 C -0.27 -6.33 12.49 30.02 0.38 -5.95 16 6 C 0.64 18.64 7.69 85.49 0.66 19.29 16 7 O -0.58 -22.38 17.41 -4.10 -0.07 -22.45 16 8 N -0.60 -13.89 3.33 -820.76 -2.73 -16.62 16 9 C 0.11 2.57 5.64 86.72 0.49 3.06 16 10 C -0.08 -1.44 2.67 -9.61 -0.03 -1.47 16 11 H 0.10 1.80 8.04 -2.39 -0.02 1.78 16 12 C 0.07 1.36 5.06 86.30 0.44 1.80 16 13 N -0.69 -19.92 6.13 -517.92 -3.17 -23.09 16 14 C 0.06 1.87 6.17 85.56 0.53 2.40 16 15 C 0.45 20.47 7.82 87.66 0.69 21.16 16 16 O -0.62 -35.21 15.78 -3.07 -0.05 -35.26 16 17 N -0.59 -28.22 5.09 -306.99 -1.56 -29.78 16 18 C -0.33 -19.83 10.16 84.04 0.85 -18.98 16 19 H 0.05 3.77 7.39 -2.91 -0.02 3.74 16 20 C -0.02 -0.89 5.50 84.92 0.47 -0.42 16 21 N -0.94 -57.26 13.96 21.66 0.30 -56.95 16 22 Si 0.97 39.04 27.74 68.60 1.90 40.95 16 23 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 24 H -0.23 -7.65 6.51 99.48 0.65 -7.00 16 25 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 26 C -0.08 -0.94 3.09 -9.41 -0.03 -0.97 16 27 H 0.10 0.96 8.05 -2.39 -0.02 0.94 16 28 C -0.14 -0.99 9.31 71.98 0.67 -0.32 16 29 C 0.10 1.38 6.14 86.85 0.53 1.92 16 30 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.09 0.13 8.14 -2.38 -0.02 0.11 16 32 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.09 0.04 8.14 -2.38 -0.02 0.02 16 36 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 37 H 0.06 1.56 7.77 -2.39 -0.02 1.54 16 38 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.04 0.72 8.06 -2.39 -0.02 0.70 16 41 H 0.34 11.17 7.65 -89.70 -0.69 10.49 16 42 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 43 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 44 H 0.39 15.27 5.76 -92.71 -0.53 14.74 16 45 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 46 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 48 H 0.06 0.48 8.08 -2.39 -0.02 0.46 16 49 H 0.09 1.01 7.69 -2.39 -0.02 0.99 16 50 H 0.08 1.02 7.99 -2.38 -0.02 1.00 16 Total: -1.00 -88.27 416.66 1.59 -86.68 By element: Atomic # 1 Polarization: 35.70 SS G_CDS: -0.34 Total: 35.36 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: 7.31 Total: 21.17 kcal Atomic # 7 Polarization: -119.29 SS G_CDS: -7.16 Total: -126.45 kcal Atomic # 8 Polarization: -57.59 SS G_CDS: -0.12 Total: -57.71 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 1.90 Total: 40.95 kcal Total: -88.27 1.59 -86.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106098002.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.464 kcal (2) G-P(sol) polarization free energy of solvation -88.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds