Wall clock time and date at job start Tue Mar 31 2020 18:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.28422 * 2 1 4 4 C 1.53997 * 110.32920 * 237.86380 * 2 1 3 5 5 N 1.47492 * 107.08162 * 242.30826 * 4 2 1 6 6 C 1.34770 * 127.03070 * 154.51545 * 5 4 2 7 7 O 1.21500 * 119.99867 * 180.02562 * 6 5 4 8 8 C 1.48329 * 120.00319 * 0.03140 * 6 5 4 9 9 C 1.42276 * 126.94110 * 180.02562 * 8 6 5 10 10 C 1.35310 * 103.92527 * 179.97438 * 9 8 6 11 11 C 1.50692 * 126.66809 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47304 * 60.00045 * 11 10 9 13 13 C 1.52999 * 109.47237 * 180.02562 * 11 10 9 14 14 C 1.53001 * 109.47171 * 300.00275 * 11 10 9 15 15 O 1.34015 * 106.66765 * 0.02562 * 10 9 8 16 16 N 1.20913 * 111.84615 * 359.97438 * 15 10 9 17 17 C 1.48116 * 105.92933 * 334.78085 * 5 4 2 18 18 C 1.54588 * 103.42557 * 39.02583 * 17 5 4 19 19 H 1.08997 * 110.57910 * 81.17193 * 18 17 5 20 20 C 1.53008 * 110.98636 * 204.37196 * 18 17 5 21 21 N 1.46497 * 109.47067 * 288.64907 * 20 18 17 22 22 C 1.36941 * 119.99722 * 180.02562 * 21 20 18 23 23 H 1.07998 * 120.00267 * 0.02562 * 22 21 20 24 24 C 1.38815 * 119.99729 * 180.02562 * 22 21 20 25 25 N 1.31613 * 120.00014 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99723 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47218 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.46944 * 120.00324 * 26 24 22 29 29 H 1.48503 * 109.46984 * 239.99895 * 26 24 22 30 30 H 1.09004 * 109.46843 * 180.68407 * 1 2 3 31 31 H 1.08994 * 109.47412 * 300.68503 * 1 2 3 32 32 H 1.09004 * 109.47025 * 60.68840 * 1 2 3 33 33 H 1.09000 * 109.91270 * 122.95326 * 4 2 1 34 34 H 1.08994 * 110.07395 * 1.75714 * 4 2 1 35 35 H 1.08007 * 128.03348 * 359.97277 * 9 8 6 36 36 H 1.08996 * 109.46847 * 60.00043 * 12 11 10 37 37 H 1.08996 * 109.47515 * 179.97438 * 12 11 10 38 38 H 1.09001 * 109.46965 * 300.00187 * 12 11 10 39 39 H 1.08997 * 109.47238 * 60.00210 * 13 11 10 40 40 H 1.09008 * 109.46918 * 179.97438 * 13 11 10 41 41 H 1.08994 * 109.47461 * 299.99678 * 13 11 10 42 42 H 1.09001 * 109.47211 * 59.99744 * 14 11 10 43 43 H 1.09008 * 109.47543 * 179.97438 * 14 11 10 44 44 H 1.08997 * 109.47156 * 299.99699 * 14 11 10 45 45 H 1.08999 * 110.66120 * 157.50984 * 17 5 4 46 46 H 1.09001 * 110.66139 * 280.62113 * 17 5 4 47 47 H 1.09000 * 109.46846 * 48.65312 * 20 18 17 48 48 H 1.09000 * 109.46901 * 168.64947 * 20 18 17 49 49 H 0.96994 * 120.00145 * 359.97438 * 21 20 18 50 50 H 0.97000 * 120.00303 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0650 -0.7681 -1.2228 5 7 2.8299 -1.9203 -0.7100 6 6 3.0647 -3.0859 -1.3445 7 8 3.7154 -3.9545 -0.7983 8 6 2.5288 -3.3083 -2.7096 9 6 2.6854 -4.4739 -3.5103 10 6 2.0185 -4.1782 -4.6498 11 6 1.8601 -5.0671 -5.8563 12 6 1.1472 -6.3581 -5.4487 13 6 1.0335 -4.3413 -6.9196 14 6 3.2396 -5.4044 -6.4258 15 8 1.5270 -2.9408 -4.4975 16 7 1.8158 -2.4713 -3.4213 17 6 3.2816 -1.5366 0.6474 18 6 2.0693 -0.7719 1.2264 19 1 1.3210 -1.4691 1.6033 20 6 2.5071 0.1969 2.3268 21 7 2.9000 -0.5615 3.5170 22 6 3.3306 0.0977 4.6375 23 1 3.3802 1.1765 4.6438 24 6 3.7034 -0.6209 5.7652 25 7 3.6426 -1.9356 5.7576 26 14 4.2915 0.2782 7.2933 27 1 4.2670 1.7423 7.0464 28 1 3.3969 -0.0462 8.4334 29 1 5.6775 -0.1470 7.6152 30 1 -0.3633 -1.0276 0.0123 31 1 -0.3634 0.5244 0.8837 32 1 -0.3633 0.5031 -0.8961 33 1 2.7167 -0.1221 -1.8110 34 1 1.2355 -1.1173 -1.8376 35 1 3.2140 -5.3834 -3.2653 36 1 0.1645 -6.1178 -5.0430 37 1 1.0322 -7.0008 -6.3214 38 1 1.7365 -6.8750 -4.6913 39 1 1.5418 -3.4219 -7.2100 40 1 0.9194 -4.9842 -7.7925 41 1 0.0507 -4.1007 -6.5142 42 1 3.8289 -5.9214 -5.6685 43 1 3.1251 -6.0478 -7.2983 44 1 3.7475 -4.4848 -6.7163 45 1 3.4981 -2.4219 1.2452 46 1 4.1541 -0.8855 0.5927 47 1 3.3538 0.7867 1.9758 48 1 1.6798 0.8614 2.5760 49 1 2.8545 -1.5303 3.5117 50 1 3.9034 -2.4378 6.5454 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106412215.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:25 Heat of formation + Delta-G solvation = 28.940731 kcal Electronic energy + Delta-G solvation = -29211.247030 eV Core-core repulsion = 25241.881355 eV Total energy + Delta-G solvation = -3969.365675 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.30997 -40.03591 -37.93777 -37.78988 -34.70923 -34.11680 -32.81344 -31.41515 -31.15042 -29.17018 -27.90613 -27.80521 -26.60999 -25.89878 -24.16286 -23.45911 -22.95386 -21.47452 -20.90696 -19.91284 -18.86950 -18.00135 -17.47289 -17.12649 -16.71123 -16.01138 -15.45355 -15.12772 -14.69745 -14.56734 -14.49590 -14.25178 -14.07854 -13.92455 -13.53847 -13.26067 -12.98616 -12.94594 -12.87893 -12.81282 -12.39178 -12.23626 -12.19027 -11.96792 -11.87233 -11.61056 -11.59857 -11.37688 -11.17190 -11.09311 -10.85828 -10.64052 -10.55617 -10.46015 -10.34069 -10.18798 -9.96608 -9.70764 -9.65729 -8.87342 -8.65848 -6.91127 -5.74147 -3.03587 0.94136 1.46347 2.57492 2.79165 3.11549 3.45039 3.50201 3.52846 3.75708 3.97750 4.32391 4.35993 4.49619 4.59539 4.63577 4.75452 4.79310 4.93492 4.99709 5.01457 5.10723 5.17917 5.26060 5.34544 5.35618 5.36649 5.45197 5.52566 5.55935 5.59330 5.59978 5.62243 5.67732 5.75256 5.78913 5.82211 5.87211 5.99570 6.06848 6.12098 6.18943 6.22139 6.40049 6.48552 6.72242 6.84869 7.46236 7.72054 7.75846 8.05572 8.43942 9.55236 10.12338 10.46740 11.48569 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023852 B = 0.002205 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.645453 B =12696.816392 C =13453.896460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.088 0.912 4 C 0.103 3.897 5 N -0.605 5.605 6 C 0.610 3.390 7 O -0.522 6.522 8 C -0.014 4.014 9 C -0.178 4.178 10 C -0.023 4.023 11 C 0.016 3.984 12 C -0.143 4.143 13 C -0.148 4.148 14 C -0.142 4.142 15 O 0.120 5.880 16 N -0.330 5.330 17 C 0.116 3.884 18 C -0.102 4.102 19 H 0.084 0.916 20 C 0.166 3.834 21 N -0.733 5.733 22 C -0.240 4.240 23 H 0.071 0.929 24 C -0.014 4.014 25 N -0.931 5.931 26 Si 0.907 3.093 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.179 0.821 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.092 0.908 46 H 0.079 0.921 47 H 0.022 0.978 48 H 0.025 0.975 49 H 0.384 0.616 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.720 -4.982 -29.622 30.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.120 4.120 3 H 0.107 0.893 4 C -0.020 4.020 5 N -0.338 5.338 6 C 0.395 3.605 7 O -0.396 6.396 8 C -0.173 4.173 9 C -0.201 4.201 10 C -0.087 4.087 11 C 0.015 3.985 12 C -0.200 4.200 13 C -0.205 4.205 14 C -0.200 4.200 15 O 0.046 5.954 16 N -0.032 5.032 17 C -0.005 4.005 18 C -0.122 4.122 19 H 0.103 0.897 20 C 0.038 3.962 21 N -0.377 5.377 22 C -0.371 4.371 23 H 0.089 0.911 24 C -0.210 4.210 25 N -0.580 5.580 26 Si 0.738 3.262 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.196 0.804 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.110 0.890 46 H 0.097 0.903 47 H 0.040 0.960 48 H 0.042 0.958 49 H 0.218 0.782 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.726 -4.148 -28.969 30.028 hybrid contribution 0.707 -0.516 1.040 1.360 sum -6.019 -4.664 -27.929 28.948 Atomic orbital electron populations 1.21819 0.94100 1.01912 1.01914 1.22104 0.96462 0.99747 0.93666 0.89334 1.22402 0.95993 0.87011 0.96637 1.48671 1.52536 1.14197 1.18419 1.16438 0.80301 0.81315 0.82406 1.90834 1.40136 1.42753 1.65925 1.23473 1.02370 0.93352 0.98105 1.22349 1.04669 1.00668 0.92395 1.24422 0.98649 0.86846 0.98734 1.19198 0.97885 0.92487 0.88952 1.21958 1.00705 0.94989 1.02344 1.21912 1.00076 1.00657 0.97843 1.21958 0.94194 1.02363 1.01457 1.84782 1.56705 1.25913 1.27979 1.74253 1.14351 1.21181 0.93418 1.22604 0.97144 1.00375 0.80423 1.22529 0.96937 0.97920 0.94772 0.89746 1.20623 0.96645 0.92686 0.86283 1.42386 1.79274 1.05951 1.10139 1.19253 1.35875 0.91275 0.90725 0.91103 1.24761 1.02412 0.95501 0.98345 1.69671 1.54363 1.04541 1.29404 0.86119 0.78086 0.78607 0.83380 1.20568 1.21901 1.21865 0.92776 0.91790 0.92672 0.91540 0.89512 0.80388 0.91863 0.90958 0.91671 0.91711 0.91293 0.91685 0.91691 0.90959 0.91894 0.88983 0.90272 0.96020 0.95766 0.78214 0.93523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.90 37.16 0.33 -1.29 16 2 C -0.10 -1.30 3.17 -89.25 -0.28 -1.58 16 3 H 0.09 1.06 7.85 -51.93 -0.41 0.66 16 4 C 0.10 1.34 5.96 -2.98 -0.02 1.32 16 5 N -0.61 -9.59 3.29 -170.92 -0.56 -10.15 16 6 C 0.61 10.25 7.92 -12.11 -0.10 10.15 16 7 O -0.52 -10.36 17.16 5.37 0.09 -10.27 16 8 C -0.01 -0.19 7.04 -82.53 -0.58 -0.77 16 9 C -0.18 -1.96 10.40 -39.07 -0.41 -2.37 16 10 C -0.02 -0.21 5.76 -35.36 -0.20 -0.41 16 11 C 0.02 0.09 0.94 -155.66 -0.15 -0.06 16 12 C -0.14 -0.70 8.36 37.16 0.31 -0.39 16 13 C -0.15 -0.68 8.07 37.16 0.30 -0.38 16 14 C -0.14 -0.68 8.36 37.16 0.31 -0.37 16 15 O 0.12 1.27 10.65 17.25 0.18 1.45 16 16 N -0.33 -4.17 9.41 33.29 0.31 -3.86 16 17 C 0.12 2.00 6.44 -2.32 -0.01 1.98 16 18 C -0.10 -1.68 2.60 -88.93 -0.23 -1.91 16 19 H 0.08 1.50 7.86 -51.93 -0.41 1.09 16 20 C 0.17 3.27 5.58 -4.04 -0.02 3.25 16 21 N -0.73 -18.65 5.52 -59.90 -0.33 -18.98 16 22 C -0.24 -6.77 9.99 -15.06 -0.15 -6.93 16 23 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 24 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 25 N -0.93 -28.72 13.06 55.49 0.72 -27.99 16 26 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 29 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.11 5.78 -51.93 -0.30 0.81 16 35 H 0.18 1.74 8.06 -52.48 -0.42 1.31 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.06 0.34 8.03 -51.93 -0.42 -0.08 16 39 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.22 8.14 -51.92 -0.42 -0.21 16 41 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 0.33 8.03 -51.93 -0.42 -0.09 16 43 H 0.07 0.23 8.14 -51.92 -0.42 -0.19 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.09 1.82 7.85 -51.93 -0.41 1.41 16 46 H 0.08 1.35 7.95 -51.93 -0.41 0.94 16 47 H 0.02 0.43 8.00 -51.93 -0.42 0.01 16 48 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.38 10.40 7.67 -40.82 -0.31 10.08 16 50 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 405.88 15.07 6.12 6.12 Total: -1.00 -33.41 405.88 -8.02 -41.43 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -8.54 Total: 4.82 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -1.00 Total: -0.26 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: 0.14 Total: -60.98 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.28 Total: -8.81 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.41 -8.02 -41.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106412215.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.371 kcal (2) G-P(sol) polarization free energy of solvation -33.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds