Wall clock time and date at job start Tue Mar 31 2020 18:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.28422 * 2 1 4 4 C 1.53997 * 110.32920 * 237.86380 * 2 1 3 5 5 N 1.47492 * 107.08162 * 242.30826 * 4 2 1 6 6 C 1.34770 * 127.03070 * 154.51545 * 5 4 2 7 7 O 1.21500 * 119.99867 * 180.02562 * 6 5 4 8 8 C 1.48329 * 120.00319 * 0.03140 * 6 5 4 9 9 C 1.42276 * 126.94110 * 180.02562 * 8 6 5 10 10 C 1.35310 * 103.92527 * 179.97438 * 9 8 6 11 11 C 1.50692 * 126.66809 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47304 * 60.00045 * 11 10 9 13 13 C 1.52999 * 109.47237 * 180.02562 * 11 10 9 14 14 C 1.53001 * 109.47171 * 300.00275 * 11 10 9 15 15 O 1.34015 * 106.66765 * 0.02562 * 10 9 8 16 16 N 1.20913 * 111.84615 * 359.97438 * 15 10 9 17 17 C 1.48116 * 105.92933 * 334.78085 * 5 4 2 18 18 C 1.54588 * 103.42557 * 39.02583 * 17 5 4 19 19 H 1.08997 * 110.57910 * 81.17193 * 18 17 5 20 20 C 1.53008 * 110.98636 * 204.37196 * 18 17 5 21 21 N 1.46497 * 109.47067 * 288.64907 * 20 18 17 22 22 C 1.36941 * 119.99722 * 180.02562 * 21 20 18 23 23 H 1.07998 * 120.00267 * 0.02562 * 22 21 20 24 24 C 1.38815 * 119.99729 * 180.02562 * 22 21 20 25 25 N 1.31613 * 120.00014 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99723 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47218 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.46944 * 120.00324 * 26 24 22 29 29 H 1.48503 * 109.46984 * 239.99895 * 26 24 22 30 30 H 1.09004 * 109.46843 * 180.68407 * 1 2 3 31 31 H 1.08994 * 109.47412 * 300.68503 * 1 2 3 32 32 H 1.09004 * 109.47025 * 60.68840 * 1 2 3 33 33 H 1.09000 * 109.91270 * 122.95326 * 4 2 1 34 34 H 1.08994 * 110.07395 * 1.75714 * 4 2 1 35 35 H 1.08007 * 128.03348 * 359.97277 * 9 8 6 36 36 H 1.08996 * 109.46847 * 60.00043 * 12 11 10 37 37 H 1.08996 * 109.47515 * 179.97438 * 12 11 10 38 38 H 1.09001 * 109.46965 * 300.00187 * 12 11 10 39 39 H 1.08997 * 109.47238 * 60.00210 * 13 11 10 40 40 H 1.09008 * 109.46918 * 179.97438 * 13 11 10 41 41 H 1.08994 * 109.47461 * 299.99678 * 13 11 10 42 42 H 1.09001 * 109.47211 * 59.99744 * 14 11 10 43 43 H 1.09008 * 109.47543 * 179.97438 * 14 11 10 44 44 H 1.08997 * 109.47156 * 299.99699 * 14 11 10 45 45 H 1.08999 * 110.66120 * 157.50984 * 17 5 4 46 46 H 1.09001 * 110.66139 * 280.62113 * 17 5 4 47 47 H 1.09000 * 109.46846 * 48.65312 * 20 18 17 48 48 H 1.09000 * 109.46901 * 168.64947 * 20 18 17 49 49 H 0.96994 * 120.00145 * 359.97438 * 21 20 18 50 50 H 0.97000 * 120.00303 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0650 -0.7681 -1.2228 5 7 2.8299 -1.9203 -0.7100 6 6 3.0647 -3.0859 -1.3445 7 8 3.7154 -3.9545 -0.7983 8 6 2.5288 -3.3083 -2.7096 9 6 2.6854 -4.4739 -3.5103 10 6 2.0185 -4.1782 -4.6498 11 6 1.8601 -5.0671 -5.8563 12 6 1.1472 -6.3581 -5.4487 13 6 1.0335 -4.3413 -6.9196 14 6 3.2396 -5.4044 -6.4258 15 8 1.5270 -2.9408 -4.4975 16 7 1.8158 -2.4713 -3.4213 17 6 3.2816 -1.5366 0.6474 18 6 2.0693 -0.7719 1.2264 19 1 1.3210 -1.4691 1.6033 20 6 2.5071 0.1969 2.3268 21 7 2.9000 -0.5615 3.5170 22 6 3.3306 0.0977 4.6375 23 1 3.3802 1.1765 4.6438 24 6 3.7034 -0.6209 5.7652 25 7 3.6426 -1.9356 5.7576 26 14 4.2915 0.2782 7.2933 27 1 4.2670 1.7423 7.0464 28 1 3.3969 -0.0462 8.4334 29 1 5.6775 -0.1470 7.6152 30 1 -0.3633 -1.0276 0.0123 31 1 -0.3634 0.5244 0.8837 32 1 -0.3633 0.5031 -0.8961 33 1 2.7167 -0.1221 -1.8110 34 1 1.2355 -1.1173 -1.8376 35 1 3.2140 -5.3834 -3.2653 36 1 0.1645 -6.1178 -5.0430 37 1 1.0322 -7.0008 -6.3214 38 1 1.7365 -6.8750 -4.6913 39 1 1.5418 -3.4219 -7.2100 40 1 0.9194 -4.9842 -7.7925 41 1 0.0507 -4.1007 -6.5142 42 1 3.8289 -5.9214 -5.6685 43 1 3.1251 -6.0478 -7.2983 44 1 3.7475 -4.4848 -6.7163 45 1 3.4981 -2.4219 1.2452 46 1 4.1541 -0.8855 0.5927 47 1 3.3538 0.7867 1.9758 48 1 1.6798 0.8614 2.5760 49 1 2.8545 -1.5303 3.5117 50 1 3.9034 -2.4378 6.5454 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106412215.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:24 Heat of formation + Delta-G solvation = 8.851352 kcal Electronic energy + Delta-G solvation = -29212.118171 eV Core-core repulsion = 25241.881355 eV Total energy + Delta-G solvation = -3970.236816 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.24527 -41.33889 -39.28657 -38.28927 -36.52565 -35.19207 -34.19832 -33.11458 -32.04055 -30.77777 -28.39504 -28.16692 -27.78544 -27.30062 -25.67356 -24.49410 -24.27430 -22.70106 -21.93852 -21.22833 -19.99438 -19.06777 -18.92633 -18.33249 -17.84557 -17.38477 -16.75743 -16.53456 -15.92194 -15.65747 -15.41774 -15.20021 -15.06570 -14.96984 -14.92745 -14.63813 -14.47151 -14.18433 -13.73920 -13.56286 -13.32714 -13.21064 -13.13698 -12.95943 -12.80737 -12.69574 -12.55542 -12.50160 -12.26491 -12.08567 -12.01387 -11.99271 -11.85612 -11.78830 -11.68395 -11.62826 -11.51366 -11.45659 -10.96808 -10.49813 -9.96884 -9.01979 -7.95849 -5.25564 -0.06057 0.57369 1.46221 1.47388 1.49041 1.57667 1.88069 1.89634 2.54647 2.68521 3.20622 3.37564 3.44446 3.49654 3.72783 3.79054 3.86340 3.91295 3.96019 4.12526 4.14562 4.21019 4.31563 4.37638 4.44775 4.47565 4.59040 4.71286 4.75246 4.76612 4.78616 4.80169 4.81365 4.89951 4.95594 5.00815 5.01769 5.02302 5.10740 5.12388 5.19518 5.26282 5.30291 5.39464 5.44210 5.44310 5.49843 6.19815 6.25556 6.64617 6.95366 7.31538 8.06843 8.29061 9.28082 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023852 B = 0.002205 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.645453 B =12696.816392 C =13453.896460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 H 0.108 0.892 4 C 0.105 3.895 5 N -0.606 5.606 6 C 0.603 3.397 7 O -0.566 6.566 8 C -0.039 4.039 9 C -0.191 4.191 10 C -0.001 4.001 11 C 0.017 3.983 12 C -0.143 4.143 13 C -0.148 4.148 14 C -0.142 4.142 15 O 0.133 5.867 16 N -0.335 5.335 17 C 0.118 3.882 18 C -0.091 4.091 19 H 0.068 0.932 20 C 0.166 3.834 21 N -0.748 5.748 22 C -0.241 4.241 23 H 0.081 0.919 24 C -0.081 4.081 25 N -0.972 5.972 26 Si 0.976 3.024 27 H -0.262 1.262 28 H -0.294 1.294 29 H -0.295 1.295 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.185 0.815 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.094 0.906 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.081 0.919 47 H 0.031 0.969 48 H 0.035 0.965 49 H 0.371 0.629 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.730 -3.635 -32.287 33.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.109 4.109 3 H 0.126 0.874 4 C -0.017 4.017 5 N -0.338 5.338 6 C 0.391 3.609 7 O -0.444 6.444 8 C -0.196 4.196 9 C -0.214 4.214 10 C -0.065 4.065 11 C 0.016 3.984 12 C -0.200 4.200 13 C -0.205 4.205 14 C -0.200 4.200 15 O 0.056 5.944 16 N -0.034 5.034 17 C -0.004 4.004 18 C -0.111 4.111 19 H 0.086 0.914 20 C 0.040 3.960 21 N -0.390 5.390 22 C -0.373 4.373 23 H 0.099 0.901 24 C -0.273 4.273 25 N -0.623 5.623 26 Si 0.805 3.195 27 H -0.186 1.186 28 H -0.221 1.221 29 H -0.223 1.223 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.202 0.798 36 H 0.076 0.924 37 H 0.113 0.887 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.108 0.892 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.113 0.887 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.099 0.901 47 H 0.049 0.951 48 H 0.053 0.947 49 H 0.203 0.797 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.761 -2.724 -31.661 32.712 hybrid contribution 0.982 -0.938 1.726 2.196 sum -6.778 -3.663 -29.936 30.911 Atomic orbital electron populations 1.21804 0.92697 1.01693 1.03194 1.22109 0.97550 0.99992 0.91214 0.87355 1.22565 0.96210 0.86103 0.96777 1.48746 1.52450 1.14847 1.17750 1.16883 0.79729 0.80889 0.83403 1.90795 1.42166 1.44116 1.67291 1.23191 1.04115 0.95068 0.97217 1.22494 1.05685 1.00400 0.92799 1.25027 0.96462 0.85971 0.99009 1.19444 0.98960 0.92176 0.87809 1.21992 1.00099 0.94719 1.03225 1.21941 0.99512 1.00919 0.98097 1.21990 0.93278 1.02594 1.02113 1.84758 1.56062 1.26589 1.26999 1.74216 1.14130 1.21258 0.93832 1.22414 0.97779 0.98976 0.81199 1.22336 0.96119 0.97333 0.95311 0.91382 1.20779 0.96999 0.92983 0.85238 1.42636 1.79340 1.05685 1.11385 1.19701 1.34302 0.91861 0.91435 0.90111 1.25637 1.03643 0.96277 1.01699 1.69846 1.56277 1.06201 1.30014 0.85036 0.76893 0.78315 0.79288 1.18622 1.22131 1.22267 0.93757 0.91884 0.90034 0.89894 0.88770 0.79776 0.92388 0.88693 0.92229 0.91895 0.89177 0.91980 0.92217 0.88714 0.92274 0.92567 0.90112 0.95119 0.94737 0.79749 0.94108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.90 71.98 0.64 -2.22 16 2 C -0.09 -2.15 3.17 -9.91 -0.03 -2.18 16 3 H 0.11 2.25 7.85 -2.39 -0.02 2.23 16 4 C 0.11 2.60 5.96 86.53 0.52 3.12 16 5 N -0.61 -19.59 3.29 -812.96 -2.68 -22.26 16 6 C 0.60 21.12 7.92 86.93 0.69 21.81 16 7 O -0.57 -23.92 17.16 -3.71 -0.06 -23.98 16 8 C -0.04 -1.08 7.04 42.96 0.30 -0.77 16 9 C -0.19 -4.18 10.40 22.60 0.24 -3.94 16 10 C 0.00 -0.02 5.76 25.01 0.14 0.12 16 11 C 0.02 0.16 0.94 -52.93 -0.05 0.11 16 12 C -0.14 -1.08 8.36 71.98 0.60 -0.48 16 13 C -0.15 -0.95 8.07 71.98 0.58 -0.37 16 14 C -0.14 -1.03 8.36 71.98 0.60 -0.43 16 15 O 0.13 2.60 10.65 71.88 0.77 3.37 16 16 N -0.33 -8.12 9.41 -49.51 -0.47 -8.58 16 17 C 0.12 4.25 6.44 86.61 0.56 4.81 16 18 C -0.09 -3.02 2.60 -9.70 -0.03 -3.05 16 19 H 0.07 2.49 7.86 -2.39 -0.02 2.47 16 20 C 0.17 6.51 5.58 86.38 0.48 6.99 16 21 N -0.75 -38.75 5.52 -343.44 -1.90 -40.65 16 22 C -0.24 -13.65 9.99 84.03 0.84 -12.81 16 23 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 24 C -0.08 -4.75 5.50 84.86 0.47 -4.29 16 25 N -0.97 -61.72 13.06 21.65 0.28 -61.44 16 26 Si 0.98 47.13 29.55 68.60 2.03 49.16 16 27 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 28 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 29 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 30 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.09 2.24 5.78 -2.39 -0.01 2.22 16 35 H 0.18 3.68 8.06 -2.91 -0.02 3.66 16 36 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.06 0.53 8.03 -2.39 -0.02 0.51 16 39 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.09 0.23 8.14 -2.38 -0.02 0.22 16 41 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.06 0.51 8.03 -2.39 -0.02 0.49 16 43 H 0.09 0.29 8.14 -2.38 -0.02 0.27 16 44 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.06 2.41 7.85 -2.39 -0.02 2.39 16 46 H 0.08 2.84 7.95 -2.39 -0.02 2.82 16 47 H 0.03 1.17 8.00 -2.39 -0.02 1.15 16 48 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.37 20.96 7.67 -92.71 -0.71 20.24 16 50 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -74.41 405.88 4.74 -69.68 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.21 Total: 28.30 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 6.55 Total: 6.42 kcal Atomic # 7 Polarization: -128.18 SS G_CDS: -4.76 Total: -132.94 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: 0.70 Total: -20.62 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -74.41 4.74 -69.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106412215.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.527 kcal (2) G-P(sol) polarization free energy of solvation -74.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds