Wall clock time and date at job start Tue Mar 31 2020 18:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 110.65888 * 2 1 4 4 C 1.54600 * 110.83198 * 236.75401 * 2 1 3 5 5 N 1.48125 * 103.42420 * 204.44599 * 4 2 1 6 6 C 1.34776 * 127.03368 * 219.28983 * 5 4 2 7 7 O 1.21691 * 119.99724 * 179.68564 * 6 5 4 8 8 C 1.46655 * 119.99775 * 359.68023 * 6 5 4 9 9 O 1.34911 * 125.99222 * 0.30887 * 8 6 5 10 10 C 1.33929 * 109.38697 * 180.17543 * 9 8 6 11 11 C 1.35130 * 108.76540 * 359.56105 * 10 9 8 12 12 C 1.36544 * 125.98438 * 180.02562 * 8 6 5 13 13 C 1.50702 * 126.64498 * 359.97438 * 12 8 6 14 14 N 1.46904 * 109.47177 * 80.00251 * 13 12 8 15 15 C 1.46900 * 111.00013 * 66.04376 * 14 13 12 16 16 C 1.46896 * 111.00190 * 189.99703 * 14 13 12 17 17 C 1.47483 * 105.92701 * 39.02347 * 5 4 2 18 18 C 1.54004 * 107.08974 * 334.77761 * 17 5 4 19 19 H 1.08999 * 110.32356 * 120.30000 * 18 17 5 20 20 C 1.52998 * 110.32931 * 242.41711 * 18 17 5 21 21 N 1.46504 * 109.46949 * 293.54415 * 20 18 17 22 22 C 1.36932 * 119.99962 * 180.02562 * 21 20 18 23 23 H 1.08005 * 119.99971 * 359.97438 * 22 21 20 24 24 C 1.38808 * 120.00111 * 179.97438 * 22 21 20 25 25 N 1.31619 * 119.99979 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00014 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47100 * 90.00360 * 26 24 22 28 28 H 1.48507 * 109.47543 * 210.00043 * 26 24 22 29 29 H 1.48503 * 109.47601 * 329.99992 * 26 24 22 30 30 H 1.09002 * 109.47292 * 296.80614 * 1 2 3 31 31 H 1.08998 * 109.47156 * 56.80764 * 1 2 3 32 32 H 1.09007 * 109.47350 * 176.80920 * 1 2 3 33 33 H 1.08994 * 110.61960 * 85.93185 * 4 2 1 34 34 H 1.08999 * 110.54627 * 322.92675 * 4 2 1 35 35 H 1.08002 * 125.62084 * 179.83267 * 10 9 8 36 36 H 1.08003 * 126.44655 * 180.30177 * 11 10 9 37 37 H 1.09004 * 109.47121 * 199.99746 * 13 12 8 38 38 H 1.08994 * 109.47520 * 319.99919 * 13 12 8 39 39 H 1.09004 * 109.47361 * 60.00037 * 15 14 13 40 40 H 1.09000 * 109.47197 * 180.02562 * 15 14 13 41 41 H 1.09002 * 109.47249 * 300.00317 * 15 14 13 42 42 H 1.09003 * 109.46599 * 60.00023 * 16 14 13 43 43 H 1.08994 * 109.47680 * 179.97438 * 16 14 13 44 44 H 1.09003 * 109.47027 * 300.00415 * 16 14 13 45 45 H 1.08995 * 109.91257 * 94.14470 * 17 5 4 46 46 H 1.09006 * 109.91105 * 215.22351 * 17 5 4 47 47 H 1.08996 * 109.47030 * 53.54056 * 20 18 17 48 48 H 1.08999 * 109.47042 * 173.55060 * 20 18 17 49 49 H 0.96996 * 120.00102 * 359.97438 * 21 20 18 50 50 H 0.97001 * 120.00135 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0798 -0.7922 -1.2084 5 7 3.4279 -1.2113 -0.7602 6 6 4.5538 -1.2497 -1.5001 7 8 5.6006 -1.6125 -0.9966 8 6 4.5173 -0.8544 -2.9119 9 8 3.4301 -0.4294 -3.5884 10 6 3.7716 -0.1612 -4.8553 11 6 5.0923 -0.4021 -5.0099 12 6 5.5788 -0.8469 -3.7707 13 6 6.9980 -1.2395 -3.4499 14 7 7.1182 -2.7034 -3.4722 15 6 6.9083 -3.2283 -4.8280 16 6 8.4166 -3.1333 -2.9364 17 6 3.2874 -1.5717 0.6629 18 6 2.0775 -0.7916 1.2100 19 1 1.3218 -1.4807 1.5870 20 6 2.5200 0.1679 2.3166 21 7 2.9887 -0.6018 3.4717 22 6 3.4369 0.0476 4.5909 23 1 3.4452 1.1271 4.6219 24 6 3.8804 -0.6816 5.6855 25 7 3.8707 -1.9972 5.6476 26 14 4.4925 0.2042 7.2120 27 1 3.3561 0.4344 8.1398 28 1 5.5221 -0.6263 7.8870 29 1 5.0860 1.5087 6.8229 30 1 -0.3634 0.4635 0.9172 31 1 -0.3633 0.5626 -0.8600 32 1 -0.3634 -1.0261 -0.0572 33 1 2.1486 -0.1519 -2.0878 34 1 1.4547 -1.6615 -1.4123 35 1 3.1027 0.1937 -5.6254 36 1 5.6657 -0.2758 -5.9163 37 1 7.6707 -0.8085 -4.1915 38 1 7.2629 -0.8682 -2.4600 39 1 7.6549 -2.8061 -5.5007 40 1 7.0023 -4.3142 -4.8159 41 1 5.9115 -2.9541 -5.1736 42 1 8.5164 -2.7900 -1.9067 43 1 8.4790 -4.2211 -2.9640 44 1 9.2179 -2.7076 -3.5406 45 1 3.1125 -2.6433 0.7590 46 1 4.1897 -1.2928 1.2074 47 1 3.3287 0.7991 1.9483 48 1 1.6778 0.7927 2.6139 49 1 2.9808 -1.5713 3.4440 50 1 4.1804 -2.5068 6.4126 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106588268.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:22 Heat of formation + Delta-G solvation = 7.548422 kcal Electronic energy + Delta-G solvation = -29840.519713 eV Core-core repulsion = 25870.226397 eV Total energy + Delta-G solvation = -3970.293315 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.88990 -39.78077 -37.97133 -37.35299 -34.60993 -33.49010 -32.73933 -31.39418 -30.48833 -28.96614 -27.65070 -27.46955 -26.25952 -25.48133 -23.51864 -22.66810 -22.19020 -21.25338 -20.89173 -19.62780 -19.28552 -17.63302 -17.05159 -16.61958 -16.38092 -15.84444 -15.33149 -15.30799 -15.17509 -14.72529 -14.66144 -14.25148 -13.83101 -13.64069 -13.46663 -13.21366 -13.14800 -12.83278 -12.67044 -12.59312 -12.51587 -12.27987 -11.90396 -11.84599 -11.75143 -11.66174 -11.59918 -11.37588 -11.02815 -10.83233 -10.55651 -10.43721 -10.26966 -10.06518 -9.94520 -9.89529 -9.61082 -8.85651 -8.82626 -8.44862 -8.38097 -6.87617 -5.71308 -3.00096 0.99304 2.13761 2.54897 3.14748 3.26551 3.47578 3.52613 3.54598 4.00855 4.41459 4.51125 4.59295 4.64312 4.67907 4.91695 4.98398 5.05388 5.13032 5.21912 5.27109 5.36149 5.42952 5.44949 5.49114 5.51663 5.57154 5.59664 5.64400 5.72714 5.76358 5.79409 5.84826 5.90962 5.92736 6.04308 6.12786 6.14073 6.19697 6.25297 6.34765 6.47005 6.52133 6.73125 6.76781 6.91661 6.93176 6.97489 7.62920 7.74737 8.22501 8.47249 9.58511 10.15577 10.50334 11.51508 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012191 B = 0.003035 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.196824 B = 9222.448759 C =10934.048637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.100 4.100 3 H 0.083 0.917 4 C 0.101 3.899 5 N -0.613 5.613 6 C 0.613 3.387 7 O -0.499 6.499 8 C -0.043 4.043 9 O -0.160 6.160 10 C -0.018 4.018 11 C -0.218 4.218 12 C -0.094 4.094 13 C 0.121 3.879 14 N -0.532 5.532 15 C 0.024 3.976 16 C 0.029 3.971 17 C 0.114 3.886 18 C -0.103 4.103 19 H 0.087 0.913 20 C 0.163 3.837 21 N -0.732 5.732 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.207 0.793 36 H 0.151 0.849 37 H 0.040 0.960 38 H 0.098 0.902 39 H 0.021 0.979 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.021 0.979 45 H 0.066 0.934 46 H 0.093 0.907 47 H 0.019 0.981 48 H 0.022 0.978 49 H 0.384 0.616 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.385 1.761 -26.746 26.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.120 4.120 3 H 0.102 0.898 4 C -0.021 4.021 5 N -0.346 5.346 6 C 0.401 3.599 7 O -0.375 6.375 8 C -0.096 4.096 9 O -0.056 6.056 10 C -0.087 4.087 11 C -0.238 4.238 12 C -0.097 4.097 13 C -0.006 4.006 14 N -0.256 5.256 15 C -0.124 4.124 16 C -0.119 4.119 17 C -0.007 4.007 18 C -0.122 4.122 19 H 0.106 0.894 20 C 0.035 3.965 21 N -0.377 5.377 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.581 5.581 26 Si 0.738 3.262 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.224 0.776 36 H 0.169 0.831 37 H 0.058 0.942 38 H 0.116 0.884 39 H 0.040 0.960 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.039 0.961 45 H 0.085 0.915 46 H 0.111 0.889 47 H 0.037 0.963 48 H 0.040 0.960 49 H 0.218 0.782 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.300 1.496 -25.939 26.014 hybrid contribution 0.971 0.476 0.032 1.082 sum -0.329 1.972 -25.906 25.983 Atomic orbital electron populations 1.21724 0.93834 1.02010 1.02077 1.22225 0.96059 0.99720 0.93956 0.89820 1.22726 0.82833 0.98738 0.97844 1.48678 1.08062 1.65413 1.12430 1.16082 0.83052 0.78781 0.81995 1.90910 1.29297 1.47259 1.70046 1.21994 0.85289 1.08434 0.93861 1.84191 1.35486 1.64559 1.21314 1.24301 0.96708 1.02891 0.84834 1.21674 0.95200 1.07978 0.98929 1.20330 0.96099 1.00922 0.92334 1.20519 0.89950 0.87826 1.02293 1.61832 1.32413 1.09458 1.21858 1.22416 1.00961 1.00225 0.88809 1.22351 0.88073 1.00883 1.00579 1.22202 1.00450 0.98914 0.79144 1.22400 0.96592 0.97967 0.95252 0.89440 1.20696 0.96119 0.92812 0.86841 1.42366 1.77024 1.05723 1.12555 1.19202 1.34548 0.91202 0.92076 0.91265 1.24732 1.02254 0.95470 0.98472 1.69657 1.53390 1.04159 1.30873 0.86199 0.78188 0.78474 0.83379 1.21783 1.21773 1.20798 0.91749 0.92711 0.92412 0.89492 0.90911 0.77629 0.83104 0.94165 0.88363 0.96033 0.91603 0.91501 0.90630 0.91409 0.96059 0.91533 0.88898 0.96282 0.96034 0.78223 0.93524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.16 37.16 0.34 -1.07 16 2 C -0.10 -1.25 3.19 -88.93 -0.28 -1.53 16 3 H 0.08 1.08 7.86 -51.93 -0.41 0.68 16 4 C 0.10 1.23 6.14 -2.31 -0.01 1.22 16 5 N -0.61 -9.56 3.29 -171.52 -0.56 -10.13 16 6 C 0.61 10.28 7.86 -12.86 -0.10 10.18 16 7 O -0.50 -9.83 15.32 5.20 0.08 -9.75 16 8 C -0.04 -0.59 6.96 -36.80 -0.26 -0.85 16 9 O -0.16 -1.79 7.73 5.01 0.04 -1.76 16 10 C -0.02 -0.14 12.08 29.63 0.36 0.21 16 11 C -0.22 -1.97 10.23 -39.89 -0.41 -2.38 16 12 C -0.09 -1.15 4.76 -104.43 -0.50 -1.64 16 13 C 0.12 1.50 4.60 -4.97 -0.02 1.47 16 14 N -0.53 -6.65 5.01 -252.72 -1.27 -7.92 16 15 C 0.02 0.24 9.37 60.06 0.56 0.80 16 16 C 0.03 0.32 9.57 60.06 0.57 0.90 16 17 C 0.11 1.99 6.31 -2.98 -0.02 1.97 16 18 C -0.10 -1.64 2.65 -89.25 -0.24 -1.88 16 19 H 0.09 1.39 7.85 -51.93 -0.41 0.98 16 20 C 0.16 3.29 5.34 -4.04 -0.02 3.27 16 21 N -0.73 -18.72 5.33 -59.91 -0.32 -19.04 16 22 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 23 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 25 N -0.93 -28.64 13.06 55.49 0.72 -27.92 16 26 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 29 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.56 8.10 -51.93 -0.42 0.13 16 33 H 0.09 0.96 5.50 -51.93 -0.29 0.68 16 34 H 0.07 0.80 8.01 -51.93 -0.42 0.39 16 35 H 0.21 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.15 1.00 8.06 -52.48 -0.42 0.57 16 37 H 0.04 0.42 8.12 -51.93 -0.42 0.00 16 38 H 0.10 1.41 6.94 -51.93 -0.36 1.05 16 39 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 41 H 0.07 0.67 6.80 -51.93 -0.35 0.32 16 42 H 0.07 0.93 8.12 -51.93 -0.42 0.50 16 43 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 44 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 45 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 46 H 0.09 1.94 7.49 -51.93 -0.39 1.56 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.38 10.27 7.51 -40.82 -0.31 9.97 16 50 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 402.13 15.07 6.06 6.06 Total: -1.00 -33.99 402.13 -8.93 -42.91 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -8.38 Total: 6.49 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -0.27 Total: 3.21 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: -1.43 Total: -65.01 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.12 Total: -11.51 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.99 -8.93 -42.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106588268.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.460 kcal (2) G-P(sol) polarization free energy of solvation -33.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds