Wall clock time and date at job start Tue Mar 31 2020 18:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 110.65888 * 2 1 4 4 C 1.54600 * 110.83198 * 236.75401 * 2 1 3 5 5 N 1.48125 * 103.42420 * 204.44599 * 4 2 1 6 6 C 1.34776 * 127.03368 * 219.28983 * 5 4 2 7 7 O 1.21691 * 119.99724 * 179.68564 * 6 5 4 8 8 C 1.46655 * 119.99775 * 359.68023 * 6 5 4 9 9 O 1.34911 * 125.99222 * 0.30887 * 8 6 5 10 10 C 1.33929 * 109.38697 * 180.17543 * 9 8 6 11 11 C 1.35130 * 108.76540 * 359.56105 * 10 9 8 12 12 C 1.36544 * 125.98438 * 180.02562 * 8 6 5 13 13 C 1.50702 * 126.64498 * 359.97438 * 12 8 6 14 14 N 1.46904 * 109.47177 * 80.00251 * 13 12 8 15 15 C 1.46900 * 111.00013 * 66.04376 * 14 13 12 16 16 C 1.46896 * 111.00190 * 189.99703 * 14 13 12 17 17 C 1.47483 * 105.92701 * 39.02347 * 5 4 2 18 18 C 1.54004 * 107.08974 * 334.77761 * 17 5 4 19 19 H 1.08999 * 110.32356 * 120.30000 * 18 17 5 20 20 C 1.52998 * 110.32931 * 242.41711 * 18 17 5 21 21 N 1.46504 * 109.46949 * 293.54415 * 20 18 17 22 22 C 1.36932 * 119.99962 * 180.02562 * 21 20 18 23 23 H 1.08005 * 119.99971 * 359.97438 * 22 21 20 24 24 C 1.38808 * 120.00111 * 179.97438 * 22 21 20 25 25 N 1.31619 * 119.99979 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00014 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47100 * 90.00360 * 26 24 22 28 28 H 1.48507 * 109.47543 * 210.00043 * 26 24 22 29 29 H 1.48503 * 109.47601 * 329.99992 * 26 24 22 30 30 H 1.09002 * 109.47292 * 296.80614 * 1 2 3 31 31 H 1.08998 * 109.47156 * 56.80764 * 1 2 3 32 32 H 1.09007 * 109.47350 * 176.80920 * 1 2 3 33 33 H 1.08994 * 110.61960 * 85.93185 * 4 2 1 34 34 H 1.08999 * 110.54627 * 322.92675 * 4 2 1 35 35 H 1.08002 * 125.62084 * 179.83267 * 10 9 8 36 36 H 1.08003 * 126.44655 * 180.30177 * 11 10 9 37 37 H 1.09004 * 109.47121 * 199.99746 * 13 12 8 38 38 H 1.08994 * 109.47520 * 319.99919 * 13 12 8 39 39 H 1.09004 * 109.47361 * 60.00037 * 15 14 13 40 40 H 1.09000 * 109.47197 * 180.02562 * 15 14 13 41 41 H 1.09002 * 109.47249 * 300.00317 * 15 14 13 42 42 H 1.09003 * 109.46599 * 60.00023 * 16 14 13 43 43 H 1.08994 * 109.47680 * 179.97438 * 16 14 13 44 44 H 1.09003 * 109.47027 * 300.00415 * 16 14 13 45 45 H 1.08995 * 109.91257 * 94.14470 * 17 5 4 46 46 H 1.09006 * 109.91105 * 215.22351 * 17 5 4 47 47 H 1.08996 * 109.47030 * 53.54056 * 20 18 17 48 48 H 1.08999 * 109.47042 * 173.55060 * 20 18 17 49 49 H 0.96996 * 120.00102 * 359.97438 * 21 20 18 50 50 H 0.97001 * 120.00135 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0798 -0.7922 -1.2084 5 7 3.4279 -1.2113 -0.7602 6 6 4.5538 -1.2497 -1.5001 7 8 5.6006 -1.6125 -0.9966 8 6 4.5173 -0.8544 -2.9119 9 8 3.4301 -0.4294 -3.5884 10 6 3.7716 -0.1612 -4.8553 11 6 5.0923 -0.4021 -5.0099 12 6 5.5788 -0.8469 -3.7707 13 6 6.9980 -1.2395 -3.4499 14 7 7.1182 -2.7034 -3.4722 15 6 6.9083 -3.2283 -4.8280 16 6 8.4166 -3.1333 -2.9364 17 6 3.2874 -1.5717 0.6629 18 6 2.0775 -0.7916 1.2100 19 1 1.3218 -1.4807 1.5870 20 6 2.5200 0.1679 2.3166 21 7 2.9887 -0.6018 3.4717 22 6 3.4369 0.0476 4.5909 23 1 3.4452 1.1271 4.6219 24 6 3.8804 -0.6816 5.6855 25 7 3.8707 -1.9972 5.6476 26 14 4.4925 0.2042 7.2120 27 1 3.3561 0.4344 8.1398 28 1 5.5221 -0.6263 7.8870 29 1 5.0860 1.5087 6.8229 30 1 -0.3634 0.4635 0.9172 31 1 -0.3633 0.5626 -0.8600 32 1 -0.3634 -1.0261 -0.0572 33 1 2.1486 -0.1519 -2.0878 34 1 1.4547 -1.6615 -1.4123 35 1 3.1027 0.1937 -5.6254 36 1 5.6657 -0.2758 -5.9163 37 1 7.6707 -0.8085 -4.1915 38 1 7.2629 -0.8682 -2.4600 39 1 7.6549 -2.8061 -5.5007 40 1 7.0023 -4.3142 -4.8159 41 1 5.9115 -2.9541 -5.1736 42 1 8.5164 -2.7900 -1.9067 43 1 8.4790 -4.2211 -2.9640 44 1 9.2179 -2.7076 -3.5406 45 1 3.1125 -2.6433 0.7590 46 1 4.1897 -1.2928 1.2074 47 1 3.3287 0.7991 1.9483 48 1 1.6778 0.7927 2.6139 49 1 2.9808 -1.5713 3.4440 50 1 4.1804 -2.5068 6.4126 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106588268.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:21 Heat of formation + Delta-G solvation = -16.405541 kcal Electronic energy + Delta-G solvation = -29841.558434 eV Core-core repulsion = 25870.226397 eV Total energy + Delta-G solvation = -3971.332037 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.71121 -41.01736 -39.17051 -38.34815 -36.46341 -34.44789 -34.03160 -33.09241 -31.51805 -30.41957 -28.54060 -28.46024 -27.22643 -27.06827 -25.21965 -23.83372 -23.08130 -22.40272 -21.97062 -20.90721 -20.30802 -19.22786 -18.51884 -17.63666 -17.40767 -16.92887 -16.67596 -16.43294 -16.19829 -16.13124 -15.62598 -15.52230 -15.28747 -15.12393 -15.06756 -14.34692 -14.08407 -14.00260 -13.86200 -13.66581 -13.43751 -13.27899 -13.21471 -12.98888 -12.90359 -12.74329 -12.72286 -12.62919 -12.53099 -12.46729 -12.16000 -11.95631 -11.85665 -11.51984 -11.37688 -11.20746 -10.95545 -10.80608 -9.91274 -9.49782 -9.25361 -9.01695 -7.95975 -5.25184 0.05219 1.41551 1.45167 1.47785 1.56025 1.58417 2.10248 2.11795 2.54753 3.15425 3.36447 3.43041 3.52240 3.67268 3.72309 3.81299 3.90060 4.18111 4.22228 4.24012 4.32470 4.41935 4.44795 4.48398 4.51155 4.54826 4.58754 4.64544 4.68015 4.71781 4.76505 4.84291 4.91193 4.94208 4.97374 4.98691 5.03539 5.04569 5.15428 5.19847 5.25040 5.35852 5.43438 5.46891 5.55783 5.90307 6.04479 6.14595 6.25929 6.45216 6.99901 7.32218 8.07253 8.30896 9.27532 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012191 B = 0.003035 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.196824 B = 9222.448759 C =10934.048637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.089 4.089 3 H 0.080 0.920 4 C 0.106 3.894 5 N -0.616 5.616 6 C 0.604 3.396 7 O -0.548 6.548 8 C -0.082 4.082 9 O -0.164 6.164 10 C 0.013 3.987 11 C -0.227 4.227 12 C -0.091 4.091 13 C 0.123 3.877 14 N -0.559 5.559 15 C 0.029 3.971 16 C 0.032 3.968 17 C 0.120 3.880 18 C -0.092 4.092 19 H 0.093 0.907 20 C 0.165 3.835 21 N -0.745 5.745 22 C -0.247 4.247 23 H 0.074 0.926 24 C -0.075 4.075 25 N -0.968 5.968 26 Si 0.974 3.026 27 H -0.282 1.282 28 H -0.296 1.296 29 H -0.272 1.272 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.259 0.741 36 H 0.180 0.820 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.038 0.962 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.050 0.950 43 H 0.075 0.925 44 H 0.039 0.961 45 H 0.062 0.938 46 H 0.046 0.954 47 H 0.006 0.994 48 H 0.032 0.968 49 H 0.374 0.626 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.102 3.209 -30.078 30.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.109 4.109 3 H 0.098 0.902 4 C -0.016 4.016 5 N -0.349 5.349 6 C 0.394 3.606 7 O -0.428 6.428 8 C -0.134 4.134 9 O -0.059 6.059 10 C -0.056 4.056 11 C -0.246 4.246 12 C -0.094 4.094 13 C -0.005 4.005 14 N -0.283 5.283 15 C -0.119 4.119 16 C -0.116 4.116 17 C -0.003 4.003 18 C -0.111 4.111 19 H 0.111 0.889 20 C 0.039 3.961 21 N -0.387 5.387 22 C -0.379 4.379 23 H 0.092 0.908 24 C -0.268 4.268 25 N -0.619 5.619 26 Si 0.803 3.197 27 H -0.209 1.209 28 H -0.222 1.222 29 H -0.197 1.197 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.123 0.877 34 H 0.109 0.891 35 H 0.275 0.725 36 H 0.197 0.803 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.094 0.906 44 H 0.057 0.943 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.024 0.976 48 H 0.050 0.950 49 H 0.206 0.794 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.062 2.988 -29.308 29.619 hybrid contribution 1.517 0.069 0.918 1.774 sum -1.545 3.056 -28.390 28.596 Atomic orbital electron populations 1.21704 0.91301 1.03067 1.02986 1.22207 0.97948 0.98831 0.91894 0.90160 1.22921 0.80925 0.99640 0.98067 1.48783 1.09431 1.65212 1.11442 1.16591 0.82532 0.78051 0.83400 1.90870 1.30911 1.49505 1.71527 1.21362 0.86853 1.12388 0.92842 1.84146 1.34555 1.64642 1.22602 1.25368 0.97180 0.99110 0.83916 1.21982 0.95963 1.08163 0.98491 1.20604 0.95466 0.99702 0.93634 1.20432 0.90896 0.88078 1.01064 1.61786 1.33190 1.09621 1.23751 1.22405 1.01397 1.00490 0.87623 1.22294 0.88403 1.01368 0.99493 1.21940 0.98972 0.98885 0.80492 1.22279 0.95988 0.97504 0.95346 0.88868 1.20805 0.95596 0.93275 0.86465 1.42575 1.77129 1.05584 1.13452 1.19613 1.33701 0.91620 0.92972 0.90831 1.25587 1.03216 0.96264 1.01708 1.69820 1.54854 1.05635 1.31577 0.85133 0.77536 0.77511 0.79533 1.20903 1.22223 1.19667 0.92406 0.90026 0.91533 0.87661 0.89115 0.72512 0.80259 0.92125 0.91676 0.94331 0.91148 0.91542 0.93106 0.90610 0.94253 0.91924 0.93568 0.97637 0.94994 0.79370 0.93977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 9.16 71.98 0.66 -1.65 16 2 C -0.09 -2.09 3.19 -9.70 -0.03 -2.13 16 3 H 0.08 1.97 7.86 -2.39 -0.02 1.95 16 4 C 0.11 2.39 6.14 86.61 0.53 2.93 16 5 N -0.62 -19.88 3.29 -814.79 -2.68 -22.56 16 6 C 0.60 21.34 7.86 86.44 0.68 22.02 16 7 O -0.55 -23.64 15.32 -4.32 -0.07 -23.71 16 8 C -0.08 -2.24 6.96 24.07 0.17 -2.07 16 9 O -0.16 -3.21 7.73 -5.00 -0.04 -3.25 16 10 C 0.01 0.15 12.08 67.10 0.81 0.96 16 11 C -0.23 -3.28 10.23 22.07 0.23 -3.06 16 12 C -0.09 -2.14 4.76 -19.74 -0.09 -2.23 16 13 C 0.12 3.08 4.60 85.56 0.39 3.47 16 14 N -0.56 -14.17 5.01 -953.46 -4.78 -18.95 16 15 C 0.03 0.52 9.37 127.69 1.20 1.72 16 16 C 0.03 0.74 9.57 127.69 1.22 1.96 16 17 C 0.12 4.44 6.31 86.53 0.55 4.98 16 18 C -0.09 -2.98 2.65 -9.90 -0.03 -3.01 16 19 H 0.09 2.95 7.85 -2.39 -0.02 2.93 16 20 C 0.17 6.86 5.34 86.38 0.46 7.32 16 21 N -0.74 -39.56 5.33 -343.46 -1.83 -41.39 16 22 C -0.25 -14.43 9.99 84.03 0.84 -13.59 16 23 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 24 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 25 N -0.97 -61.41 13.06 21.65 0.28 -61.12 16 26 Si 0.97 47.86 29.55 68.60 2.03 49.88 16 27 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 28 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 29 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 32 H 0.07 1.06 8.10 -2.38 -0.02 1.04 16 33 H 0.11 2.04 5.50 -2.39 -0.01 2.03 16 34 H 0.09 1.77 8.01 -2.39 -0.02 1.75 16 35 H 0.26 0.06 8.06 -2.91 -0.02 0.04 16 36 H 0.18 1.52 8.06 -2.91 -0.02 1.49 16 37 H 0.06 1.21 8.12 -2.39 -0.02 1.19 16 38 H 0.06 2.04 6.94 -2.39 -0.02 2.03 16 39 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.07 1.20 8.12 -2.39 -0.02 1.18 16 41 H 0.07 1.21 6.80 -2.39 -0.02 1.19 16 42 H 0.05 1.38 8.12 -2.39 -0.02 1.36 16 43 H 0.08 1.55 8.12 -2.39 -0.02 1.53 16 44 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 46 H 0.05 2.13 7.49 -2.38 -0.02 2.11 16 47 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 48 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.37 21.06 7.51 -92.71 -0.70 20.36 16 50 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -79.24 402.13 1.19 -78.04 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: 0.23 Total: 29.47 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 8.05 Total: 13.59 kcal Atomic # 7 Polarization: -135.02 SS G_CDS: -9.01 Total: -144.02 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.10 Total: -26.96 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.88 kcal Total: -79.24 1.19 -78.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106588268.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.636 kcal (2) G-P(sol) polarization free energy of solvation -79.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds