Wall clock time and date at job start Tue Mar 31 2020 18:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 110.30490 * 2 1 4 4 C 1.54389 * 110.34548 * 237.71084 * 2 1 3 5 5 N 1.48142 * 104.61773 * 264.99483 * 4 2 1 6 6 C 1.34776 * 127.84000 * 140.41039 * 5 4 2 7 7 O 1.21280 * 120.00638 * 179.97438 * 6 5 4 8 8 C 1.50707 * 119.99497 * 359.97438 * 6 5 4 9 9 H 1.08994 * 115.55271 * 34.41794 * 8 6 5 10 10 C 1.52999 * 117.49888 * 248.74045 * 8 6 5 11 11 C 1.52998 * 117.49681 * 180.08521 * 8 6 5 12 12 C 1.52992 * 138.59006 * 336.59582 * 11 8 6 13 13 C 1.52994 * 60.00118 * 229.10927 * 12 11 8 14 14 C 1.48150 * 104.32668 * 320.41477 * 5 4 2 15 15 C 1.54290 * 110.34305 * 122.17491 * 2 1 3 16 16 H 1.08999 * 110.33916 * 359.89058 * 15 2 1 17 17 C 1.53006 * 110.34075 * 237.74404 * 15 2 1 18 18 N 1.46905 * 109.46684 * 174.99731 * 17 15 2 19 19 C 1.46903 * 110.99390 * 179.97438 * 18 17 15 20 20 C 1.50702 * 109.46687 * 180.02562 * 19 18 17 21 21 O 1.21295 * 120.00111 * 359.97438 * 20 19 18 22 22 N 1.34772 * 119.99884 * 180.02562 * 20 19 18 23 23 C 1.37102 * 119.99908 * 180.02562 * 22 20 19 24 24 H 1.07994 * 120.00054 * 359.97438 * 23 22 20 25 25 C 1.38952 * 119.99755 * 179.97438 * 23 22 20 26 26 N 1.31416 * 119.99640 * 179.97438 * 25 23 22 27 27 Si 1.86791 * 120.00282 * 359.97438 * 25 23 22 28 28 H 1.48494 * 109.47559 * 90.00282 * 27 25 23 29 29 H 1.48506 * 109.47374 * 210.00202 * 27 25 23 30 30 H 1.48503 * 109.47295 * 330.00039 * 27 25 23 31 31 H 1.09002 * 109.47470 * 297.82878 * 1 2 3 32 32 H 1.09004 * 109.47003 * 57.82746 * 1 2 3 33 33 H 1.08998 * 109.47205 * 177.82186 * 1 2 3 34 34 H 1.08998 * 110.40789 * 23.78479 * 4 2 1 35 35 H 1.09009 * 110.40612 * 146.21238 * 4 2 1 36 36 H 1.08998 * 117.49687 * 0.02562 * 10 8 6 37 37 H 1.08998 * 117.50028 * 145.02115 * 10 8 6 38 38 H 1.09009 * 117.49861 * 336.60148 * 12 11 8 39 39 H 1.08995 * 117.50131 * 121.61688 * 12 11 8 40 40 H 1.09001 * 117.49954 * 252.51052 * 13 12 11 41 41 H 1.09003 * 117.52298 * 107.47872 * 13 12 11 42 42 H 1.08999 * 110.40590 * 280.80034 * 14 5 4 43 43 H 1.09002 * 110.40678 * 158.36557 * 14 5 4 44 44 H 1.08995 * 109.46794 * 294.99857 * 17 15 2 45 45 H 1.09000 * 109.47314 * 54.99991 * 17 15 2 46 46 H 1.00901 * 110.99779 * 56.04682 * 18 17 15 47 47 H 1.08994 * 109.47436 * 299.99878 * 19 18 17 48 48 H 1.08999 * 109.47287 * 60.00669 * 19 18 17 49 49 H 0.96995 * 120.00258 * 359.97438 * 22 20 19 50 50 H 0.97006 * 119.99812 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0667 -0.7733 -1.2237 5 7 2.3139 -2.1445 -0.7205 6 6 2.0774 -3.3119 -1.3511 7 8 2.3365 -4.3615 -0.8016 8 6 1.4908 -3.3128 -2.7394 9 1 1.8018 -2.4891 -3.3817 10 6 0.0620 -3.8351 -2.9022 11 6 1.2439 -4.6701 -3.4009 12 6 1.7583 -6.1073 -3.2981 13 6 1.6641 -5.4244 -4.6639 14 6 2.8801 -1.9416 0.6334 15 6 2.0663 -0.7704 1.2245 16 1 1.2397 -1.1471 1.8269 17 6 2.9691 0.1328 2.0674 18 7 3.3720 -0.5793 3.2875 19 6 4.2422 0.2590 4.1230 20 6 4.6345 -0.5034 5.3623 21 8 4.2288 -1.6337 5.5330 22 7 5.4355 0.0710 6.2815 23 6 5.7929 -0.6228 7.4088 24 1 5.4323 -1.6294 7.5603 25 6 6.6191 -0.0308 8.3562 26 7 6.9612 -0.6956 9.4369 27 14 7.2434 1.7100 8.0938 28 1 6.2848 2.6749 8.6899 29 1 8.5695 1.8638 8.7444 30 1 7.3724 1.9756 6.6384 31 1 -0.3634 0.4797 0.9088 32 1 -0.3633 0.5472 -0.8699 33 1 -0.3633 -1.0269 -0.0391 34 1 1.3224 -0.7890 -2.0198 35 1 2.9950 -0.3256 -1.5789 36 1 -0.4539 -4.1776 -2.0052 37 1 -0.5670 -3.3551 -3.6519 38 1 2.7529 -6.2570 -2.8777 39 1 1.0309 -6.8875 -3.0742 40 1 0.8746 -5.7553 -5.3387 41 1 2.5964 -5.1245 -5.1425 42 1 3.9354 -1.6764 0.5683 43 1 2.7494 -2.8387 1.2385 44 1 3.8559 0.3985 1.4921 45 1 2.4264 1.0386 2.3377 46 1 3.8204 -1.4550 3.0637 47 1 5.1378 0.5253 3.5619 48 1 3.7087 1.1659 4.4077 49 1 5.7597 0.9749 6.1453 50 1 7.5377 -0.2822 10.0985 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106699844.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:19 Heat of formation + Delta-G solvation = -2.834524 kcal Electronic energy + Delta-G solvation = -28374.396914 eV Core-core repulsion = 24403.653361 eV Total energy + Delta-G solvation = -3970.743554 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.59449 -39.07016 -38.37642 -37.33725 -35.44783 -33.90811 -33.16280 -32.70233 -31.66310 -30.62277 -27.44258 -26.86148 -25.64274 -23.92501 -23.26506 -22.71736 -21.74353 -20.36569 -20.14474 -19.37524 -18.80511 -18.29937 -17.46441 -16.62639 -15.95108 -15.78216 -15.58226 -15.34098 -15.24235 -14.89502 -14.42175 -14.33259 -14.27446 -13.75460 -13.64950 -13.41587 -13.18884 -13.09457 -12.88476 -12.50859 -12.27618 -12.21167 -12.03630 -11.99100 -11.79425 -11.68787 -11.59749 -11.16702 -11.05869 -10.90081 -10.83630 -10.59238 -10.58246 -10.47397 -10.35528 -9.96598 -9.92011 -9.56392 -8.95337 -8.59188 -8.19347 -8.14608 -6.29962 -3.81385 2.23978 2.56656 3.02437 3.07061 3.15159 3.34609 3.40158 3.74887 3.89534 3.94096 4.10817 4.19621 4.24887 4.36835 4.49529 4.58808 4.69829 4.80561 4.94601 4.98919 5.03876 5.12086 5.15047 5.18570 5.22323 5.24322 5.27304 5.28007 5.31404 5.37660 5.48149 5.53413 5.53680 5.60241 5.62712 5.64164 5.73131 5.79939 5.85489 5.87122 5.88007 5.92045 5.98875 6.20481 7.07168 7.31474 7.54417 7.59379 7.97341 8.15890 8.60907 8.96264 9.43515 9.83940 10.83206 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020449 B = 0.001925 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.933834 B =14541.956357 C =15407.821309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 H 0.089 0.911 4 C 0.104 3.896 5 N -0.620 5.620 6 C 0.560 3.440 7 O -0.530 6.530 8 C -0.137 4.137 9 H 0.122 0.878 10 C -0.099 4.099 11 C -0.203 4.203 12 C -0.113 4.113 13 C -0.129 4.129 14 C 0.106 3.894 15 C -0.096 4.096 16 H 0.096 0.904 17 C 0.069 3.931 18 N -0.670 5.670 19 C 0.048 3.952 20 C 0.449 3.551 21 O -0.563 6.563 22 N -0.591 5.591 23 C -0.305 4.305 24 H 0.120 0.880 25 C 0.041 3.959 26 N -0.881 5.881 27 Si 0.881 3.119 28 H -0.271 1.271 29 H -0.277 1.277 30 H -0.270 1.270 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.029 0.971 45 H 0.076 0.924 46 H 0.351 0.649 47 H 0.044 0.956 48 H 0.088 0.912 49 H 0.370 0.630 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.444 3.504 -30.517 33.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 H 0.107 0.893 4 C -0.020 4.020 5 N -0.354 5.354 6 C 0.349 3.651 7 O -0.406 6.406 8 C -0.158 4.158 9 H 0.140 0.860 10 C -0.136 4.136 11 C -0.204 4.204 12 C -0.150 4.150 13 C -0.166 4.166 14 C -0.016 4.016 15 C -0.115 4.115 16 H 0.114 0.886 17 C -0.061 4.061 18 N -0.303 5.303 19 C -0.085 4.085 20 C 0.235 3.765 21 O -0.445 6.445 22 N -0.231 5.231 23 C -0.434 4.434 24 H 0.137 0.863 25 C -0.162 4.162 26 N -0.521 5.521 27 Si 0.707 3.293 28 H -0.196 1.196 29 H -0.202 1.202 30 H -0.196 1.196 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.048 0.952 45 H 0.095 0.905 46 H 0.170 0.830 47 H 0.062 0.938 48 H 0.106 0.894 49 H 0.203 0.797 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.037 2.195 -29.592 32.411 hybrid contribution 1.576 1.686 -0.464 2.354 sum -11.461 3.881 -30.056 32.400 Atomic orbital electron populations 1.21834 0.94001 1.02084 1.02034 1.22130 0.96679 0.99467 0.93824 0.89312 1.22512 1.00657 0.81781 0.97019 1.48883 1.63430 1.05390 1.17688 1.19297 0.77742 0.82008 0.86059 1.90736 1.52061 1.30509 1.67266 1.21902 1.01417 0.97784 0.94714 0.86047 1.22668 0.88708 0.99710 1.02536 1.21190 1.03018 0.92096 1.04061 1.22616 1.02576 0.91697 0.98062 1.22770 1.02435 1.01190 0.90197 1.22466 0.96841 0.99500 0.82795 1.22236 0.99057 0.94903 0.95349 0.88609 1.22045 0.97245 0.96803 0.90002 1.60086 1.46157 1.06796 1.17215 1.21704 0.95469 0.96956 0.94331 1.19723 0.83305 0.88161 0.85350 1.90577 1.56641 1.19100 1.78164 1.42203 1.45167 1.15425 1.20259 1.19441 1.27719 1.01383 0.94808 0.86275 1.25046 0.97272 0.98324 0.95587 1.69629 1.35760 1.37290 1.09463 0.86659 0.79566 0.84712 0.78348 1.19611 1.20209 1.19565 0.91961 0.92553 0.92534 0.90067 0.91017 0.87999 0.87559 0.88111 0.88411 0.88280 0.88543 0.91269 0.89287 0.95248 0.90533 0.82976 0.93791 0.89418 0.79715 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 8.90 37.15 0.33 -0.58 16 2 C -0.10 -0.69 3.31 -89.22 -0.30 -0.98 16 3 H 0.09 0.50 7.71 -51.93 -0.40 0.10 16 4 C 0.10 0.69 6.37 -2.41 -0.02 0.68 16 5 N -0.62 -6.32 3.32 -169.30 -0.56 -6.88 16 6 C 0.56 6.75 7.70 -10.98 -0.08 6.66 16 7 O -0.53 -8.60 16.51 5.56 0.09 -8.51 16 8 C -0.14 -1.19 5.30 -91.77 -0.49 -1.68 16 9 H 0.12 0.79 7.65 -51.93 -0.40 0.39 16 10 C -0.10 -0.73 10.24 -26.70 -0.27 -1.01 16 11 C -0.20 -1.79 5.06 -154.48 -0.78 -2.58 16 12 C -0.11 -1.01 10.16 -26.74 -0.27 -1.28 16 13 C -0.13 -0.88 10.53 -26.74 -0.28 -1.16 16 14 C 0.11 1.18 5.88 -2.41 -0.01 1.17 16 15 C -0.10 -0.92 2.95 -89.22 -0.26 -1.18 16 16 H 0.10 1.08 7.71 -51.93 -0.40 0.68 16 17 C 0.07 0.72 4.86 -3.82 -0.02 0.71 16 18 N -0.67 -10.11 6.13 -115.05 -0.70 -10.81 16 19 C 0.05 0.78 6.17 -4.97 -0.03 0.75 16 20 C 0.45 10.26 7.82 -10.99 -0.09 10.18 16 21 O -0.56 -15.36 15.78 5.54 0.09 -15.27 16 22 N -0.59 -14.16 5.09 -10.96 -0.06 -14.22 16 23 C -0.30 -8.71 10.16 -14.93 -0.15 -8.86 16 24 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 25 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 26 N -0.88 -25.96 13.96 55.50 0.77 -25.18 16 27 Si 0.88 19.42 27.74 -169.99 -4.71 14.71 16 28 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 29 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 30 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.41 6.93 -51.93 -0.36 0.05 16 35 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 36 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 1.03 8.14 -51.92 -0.42 0.61 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.75 7.75 -51.93 -0.40 0.34 16 43 H 0.09 1.22 7.88 -51.93 -0.41 0.81 16 44 H 0.03 0.28 7.98 -51.93 -0.41 -0.13 16 45 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.35 5.64 7.75 -39.29 -0.30 5.33 16 47 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 49 H 0.37 7.74 5.76 -40.82 -0.24 7.50 16 50 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 LS Contribution 408.82 15.07 6.16 6.16 Total: -1.00 -35.60 408.82 -10.12 -45.71 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -8.38 Total: 12.45 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -2.82 Total: 1.85 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: -0.55 Total: -57.10 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: 0.18 Total: -23.78 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.71 Total: 14.71 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.60 -10.12 -45.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106699844.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.878 kcal (2) G-P(sol) polarization free energy of solvation -35.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds