Wall clock time and date at job start Tue Mar 31 2020 18:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 110.30490 * 2 1 4 4 C 1.54389 * 110.34548 * 237.71084 * 2 1 3 5 5 N 1.48142 * 104.61773 * 264.99483 * 4 2 1 6 6 C 1.34776 * 127.84000 * 140.41039 * 5 4 2 7 7 O 1.21280 * 120.00638 * 179.97438 * 6 5 4 8 8 C 1.50707 * 119.99497 * 359.97438 * 6 5 4 9 9 H 1.08994 * 115.55271 * 34.41794 * 8 6 5 10 10 C 1.52999 * 117.49888 * 248.74045 * 8 6 5 11 11 C 1.52998 * 117.49681 * 180.08521 * 8 6 5 12 12 C 1.52992 * 138.59006 * 336.59582 * 11 8 6 13 13 C 1.52994 * 60.00118 * 229.10927 * 12 11 8 14 14 C 1.48150 * 104.32668 * 320.41477 * 5 4 2 15 15 C 1.54290 * 110.34305 * 122.17491 * 2 1 3 16 16 H 1.08999 * 110.33916 * 359.89058 * 15 2 1 17 17 C 1.53006 * 110.34075 * 237.74404 * 15 2 1 18 18 N 1.46905 * 109.46684 * 174.99731 * 17 15 2 19 19 C 1.46903 * 110.99390 * 179.97438 * 18 17 15 20 20 C 1.50702 * 109.46687 * 180.02562 * 19 18 17 21 21 O 1.21295 * 120.00111 * 359.97438 * 20 19 18 22 22 N 1.34772 * 119.99884 * 180.02562 * 20 19 18 23 23 C 1.37102 * 119.99908 * 180.02562 * 22 20 19 24 24 H 1.07994 * 120.00054 * 359.97438 * 23 22 20 25 25 C 1.38952 * 119.99755 * 179.97438 * 23 22 20 26 26 N 1.31416 * 119.99640 * 179.97438 * 25 23 22 27 27 Si 1.86791 * 120.00282 * 359.97438 * 25 23 22 28 28 H 1.48494 * 109.47559 * 90.00282 * 27 25 23 29 29 H 1.48506 * 109.47374 * 210.00202 * 27 25 23 30 30 H 1.48503 * 109.47295 * 330.00039 * 27 25 23 31 31 H 1.09002 * 109.47470 * 297.82878 * 1 2 3 32 32 H 1.09004 * 109.47003 * 57.82746 * 1 2 3 33 33 H 1.08998 * 109.47205 * 177.82186 * 1 2 3 34 34 H 1.08998 * 110.40789 * 23.78479 * 4 2 1 35 35 H 1.09009 * 110.40612 * 146.21238 * 4 2 1 36 36 H 1.08998 * 117.49687 * 0.02562 * 10 8 6 37 37 H 1.08998 * 117.50028 * 145.02115 * 10 8 6 38 38 H 1.09009 * 117.49861 * 336.60148 * 12 11 8 39 39 H 1.08995 * 117.50131 * 121.61688 * 12 11 8 40 40 H 1.09001 * 117.49954 * 252.51052 * 13 12 11 41 41 H 1.09003 * 117.52298 * 107.47872 * 13 12 11 42 42 H 1.08999 * 110.40590 * 280.80034 * 14 5 4 43 43 H 1.09002 * 110.40678 * 158.36557 * 14 5 4 44 44 H 1.08995 * 109.46794 * 294.99857 * 17 15 2 45 45 H 1.09000 * 109.47314 * 54.99991 * 17 15 2 46 46 H 1.00901 * 110.99779 * 56.04682 * 18 17 15 47 47 H 1.08994 * 109.47436 * 299.99878 * 19 18 17 48 48 H 1.08999 * 109.47287 * 60.00669 * 19 18 17 49 49 H 0.96995 * 120.00258 * 359.97438 * 22 20 19 50 50 H 0.97006 * 119.99812 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0667 -0.7733 -1.2237 5 7 2.3139 -2.1445 -0.7205 6 6 2.0774 -3.3119 -1.3511 7 8 2.3365 -4.3615 -0.8016 8 6 1.4908 -3.3128 -2.7394 9 1 1.8018 -2.4891 -3.3817 10 6 0.0620 -3.8351 -2.9022 11 6 1.2439 -4.6701 -3.4009 12 6 1.7583 -6.1073 -3.2981 13 6 1.6641 -5.4244 -4.6639 14 6 2.8801 -1.9416 0.6334 15 6 2.0663 -0.7704 1.2245 16 1 1.2397 -1.1471 1.8269 17 6 2.9691 0.1328 2.0674 18 7 3.3720 -0.5793 3.2875 19 6 4.2422 0.2590 4.1230 20 6 4.6345 -0.5034 5.3623 21 8 4.2288 -1.6337 5.5330 22 7 5.4355 0.0710 6.2815 23 6 5.7929 -0.6228 7.4088 24 1 5.4323 -1.6294 7.5603 25 6 6.6191 -0.0308 8.3562 26 7 6.9612 -0.6956 9.4369 27 14 7.2434 1.7100 8.0938 28 1 6.2848 2.6749 8.6899 29 1 8.5695 1.8638 8.7444 30 1 7.3724 1.9756 6.6384 31 1 -0.3634 0.4797 0.9088 32 1 -0.3633 0.5472 -0.8699 33 1 -0.3633 -1.0269 -0.0391 34 1 1.3224 -0.7890 -2.0198 35 1 2.9950 -0.3256 -1.5789 36 1 -0.4539 -4.1776 -2.0052 37 1 -0.5670 -3.3551 -3.6519 38 1 2.7529 -6.2570 -2.8777 39 1 1.0309 -6.8875 -3.0742 40 1 0.8746 -5.7553 -5.3387 41 1 2.5964 -5.1245 -5.1425 42 1 3.9354 -1.6764 0.5683 43 1 2.7494 -2.8387 1.2385 44 1 3.8559 0.3985 1.4921 45 1 2.4264 1.0386 2.3377 46 1 3.8204 -1.4550 3.0637 47 1 5.1378 0.5253 3.5619 48 1 3.7087 1.1659 4.4077 49 1 5.7597 0.9749 6.1453 50 1 7.5377 -0.2822 10.0985 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106699844.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:18 Heat of formation + Delta-G solvation = -29.256757 kcal Electronic energy + Delta-G solvation = -28375.542668 eV Core-core repulsion = 24403.653361 eV Total energy + Delta-G solvation = -3971.889308 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.39917 -40.33893 -39.66707 -38.15911 -36.65695 -35.86649 -33.95383 -33.74840 -33.36318 -31.53649 -28.74074 -27.46525 -26.95329 -25.34528 -24.15718 -23.31793 -22.51943 -21.37389 -20.96743 -20.89426 -20.25961 -19.46350 -18.29455 -17.92861 -17.25383 -16.76130 -16.74074 -16.53647 -15.93001 -15.91372 -15.66743 -15.61429 -15.15789 -14.94288 -14.74440 -14.47004 -14.40406 -14.27498 -14.06473 -13.66526 -13.50477 -13.26043 -13.06586 -12.89935 -12.71240 -12.59587 -12.42346 -12.39529 -12.32852 -11.98701 -11.74592 -11.62049 -11.56087 -11.51889 -11.22249 -11.10870 -10.97493 -10.78439 -10.45369 -10.26133 -9.78295 -9.32345 -8.42220 -6.03745 1.29566 1.35933 1.39445 1.44816 1.80132 1.94878 2.22912 2.69434 2.71531 2.77979 3.13852 3.28819 3.32729 3.50406 3.62204 3.73840 3.83528 3.89672 4.04644 4.16190 4.23383 4.29927 4.33751 4.43788 4.45465 4.53932 4.55747 4.56608 4.66947 4.70130 4.71721 4.74446 4.77658 4.81953 4.84969 4.92906 4.96873 4.98804 5.10323 5.16224 5.21603 5.23603 5.33058 5.51784 5.54976 5.89713 6.06166 6.33921 6.52109 6.58854 6.87051 7.09368 7.38575 7.96142 8.75652 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020449 B = 0.001925 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.933834 B =14541.956357 C =15407.821309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 H 0.117 0.883 4 C 0.101 3.899 5 N -0.619 5.619 6 C 0.548 3.452 7 O -0.590 6.590 8 C -0.137 4.137 9 H 0.153 0.847 10 C -0.083 4.083 11 C -0.230 4.230 12 C -0.140 4.140 13 C -0.099 4.099 14 C 0.104 3.896 15 C -0.088 4.088 16 H 0.070 0.930 17 C 0.073 3.927 18 N -0.694 5.694 19 C 0.064 3.936 20 C 0.444 3.556 21 O -0.618 6.618 22 N -0.590 5.590 23 C -0.331 4.331 24 H 0.052 0.948 25 C -0.018 4.018 26 N -0.935 5.935 27 Si 0.969 3.031 28 H -0.256 1.256 29 H -0.275 1.275 30 H -0.229 1.229 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.141 0.859 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.121 0.879 41 H 0.105 0.895 42 H 0.074 0.926 43 H 0.046 0.954 44 H 0.053 0.947 45 H 0.095 0.905 46 H 0.339 0.661 47 H 0.079 0.921 48 H 0.120 0.880 49 H 0.391 0.609 50 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.801 8.666 -34.503 37.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.111 4.111 3 H 0.135 0.865 4 C -0.021 4.021 5 N -0.351 5.351 6 C 0.338 3.662 7 O -0.470 6.470 8 C -0.158 4.158 9 H 0.170 0.830 10 C -0.121 4.121 11 C -0.231 4.231 12 C -0.177 4.177 13 C -0.136 4.136 14 C -0.019 4.019 15 C -0.108 4.108 16 H 0.089 0.911 17 C -0.055 4.055 18 N -0.327 5.327 19 C -0.069 4.069 20 C 0.233 3.767 21 O -0.503 6.503 22 N -0.231 5.231 23 C -0.461 4.461 24 H 0.070 0.930 25 C -0.216 4.216 26 N -0.576 5.576 27 Si 0.788 3.212 28 H -0.180 1.180 29 H -0.200 1.200 30 H -0.152 1.152 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.056 0.944 34 H 0.123 0.877 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.159 0.841 38 H 0.095 0.905 39 H 0.117 0.883 40 H 0.139 0.861 41 H 0.123 0.877 42 H 0.092 0.908 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.114 0.886 46 H 0.157 0.843 47 H 0.097 0.903 48 H 0.137 0.863 49 H 0.227 0.773 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.418 7.418 -33.621 36.952 hybrid contribution 1.630 -0.083 0.839 1.835 sum -11.788 7.335 -32.782 35.601 Atomic orbital electron populations 1.21822 0.93723 1.01252 1.02947 1.22144 0.96810 1.00260 0.91867 0.86542 1.22826 1.02437 0.79301 0.97518 1.49014 1.62298 1.06667 1.17170 1.20058 0.77168 0.81628 0.87305 1.90705 1.54684 1.32710 1.68907 1.21960 1.02246 0.98784 0.92768 0.82980 1.22760 0.88189 0.98633 1.02469 1.21489 1.04291 0.91797 1.05479 1.22587 1.01551 0.92702 1.00898 1.22846 1.03242 0.98429 0.89043 1.22398 0.97647 0.98547 0.83340 1.22130 0.97903 0.94529 0.96254 0.91102 1.22156 0.98233 0.96782 0.88361 1.60105 1.45993 1.06887 1.19676 1.21641 0.97545 0.96491 0.91187 1.21135 0.81206 0.87791 0.86617 1.90557 1.58122 1.22009 1.79605 1.42014 1.45806 1.16084 1.19242 1.19006 1.29499 0.99788 0.97765 0.93031 1.26187 0.96524 1.04582 0.94302 1.69821 1.36578 1.40361 1.10842 0.85311 0.78613 0.76431 0.80799 1.18003 1.20049 1.15223 0.92418 0.90144 0.94397 0.87665 0.89006 0.89709 0.84108 0.90548 0.88349 0.86090 0.87664 0.90777 0.93487 0.92939 0.88632 0.84306 0.90325 0.86257 0.77332 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.90 71.98 0.64 -0.77 16 2 C -0.09 -0.92 3.31 -9.89 -0.03 -0.96 16 3 H 0.12 0.64 7.71 -2.39 -0.02 0.62 16 4 C 0.10 0.99 6.37 86.54 0.55 1.54 16 5 N -0.62 -12.31 3.32 -807.95 -2.68 -14.99 16 6 C 0.55 13.55 7.70 87.66 0.67 14.23 16 7 O -0.59 -20.92 16.51 -3.03 -0.05 -20.97 16 8 C -0.14 -2.18 5.30 -11.54 -0.06 -2.24 16 9 H 0.15 1.42 7.65 -2.39 -0.02 1.40 16 10 C -0.08 -1.10 10.24 30.62 0.31 -0.78 16 11 C -0.23 -3.88 5.06 -52.16 -0.26 -4.14 16 12 C -0.14 -2.67 10.16 30.59 0.31 -2.36 16 13 C -0.10 -1.19 10.53 30.59 0.32 -0.87 16 14 C 0.10 2.38 5.88 86.53 0.51 2.89 16 15 C -0.09 -1.59 2.95 -9.88 -0.03 -1.62 16 16 H 0.07 1.64 7.71 -2.39 -0.02 1.62 16 17 C 0.07 1.32 4.86 86.30 0.42 1.74 16 18 N -0.69 -20.22 6.13 -517.91 -3.17 -23.39 16 19 C 0.06 1.89 6.17 85.56 0.53 2.42 16 20 C 0.44 20.44 7.82 87.66 0.69 21.12 16 21 O -0.62 -35.60 15.78 -3.08 -0.05 -35.64 16 22 N -0.59 -28.12 5.09 -306.98 -1.56 -29.68 16 23 C -0.33 -19.81 10.16 84.04 0.85 -18.95 16 24 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 25 C -0.02 -0.99 5.50 84.93 0.47 -0.52 16 26 N -0.94 -57.26 13.96 21.66 0.30 -56.96 16 27 Si 0.97 38.82 27.74 68.60 1.90 40.73 16 28 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 29 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 30 H -0.23 -7.61 6.52 99.48 0.65 -6.96 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.11 0.58 6.93 -2.39 -0.02 0.57 16 35 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.08 1.77 8.14 -2.38 -0.02 1.76 16 39 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.07 1.59 7.75 -2.39 -0.02 1.58 16 43 H 0.05 1.45 7.88 -2.39 -0.02 1.43 16 44 H 0.05 0.75 7.98 -2.39 -0.02 0.73 16 45 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.34 11.18 7.75 -89.69 -0.70 10.49 16 47 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 49 H 0.39 15.17 5.76 -92.71 -0.53 14.63 16 50 H 0.28 15.57 8.31 -92.70 -0.77 14.80 16 Total: -1.00 -89.13 408.82 0.24 -88.89 By element: Atomic # 1 Polarization: 41.64 SS G_CDS: -0.34 Total: 41.30 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 5.89 Total: 10.73 kcal Atomic # 7 Polarization: -117.91 SS G_CDS: -7.11 Total: -125.02 kcal Atomic # 8 Polarization: -56.52 SS G_CDS: -0.10 Total: -56.62 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 1.90 Total: 40.73 kcal Total: -89.13 0.24 -88.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106699844.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.629 kcal (2) G-P(sol) polarization free energy of solvation -89.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds