Wall clock time and date at job start Tue Mar 31 2020 19:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47126 * 2 1 4 4 C 1.53001 * 109.47391 * 120.00832 * 2 1 3 5 5 C 1.50701 * 109.46671 * 294.99610 * 4 2 1 6 6 O 1.21283 * 120.00046 * 0.02562 * 5 4 2 7 7 N 1.34782 * 119.99986 * 179.97438 * 5 4 2 8 8 C 1.46495 * 119.99922 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.46922 * 180.02562 * 8 7 5 10 10 C 1.52992 * 109.55457 * 304.87757 * 9 8 7 11 11 C 1.53297 * 109.51246 * 184.74770 * 9 8 7 12 12 N 1.47149 * 108.38367 * 187.77545 * 11 9 8 13 13 C 1.36939 * 120.98120 * 230.55672 * 12 11 9 14 14 H 1.08001 * 119.99552 * 153.30577 * 13 12 11 15 15 C 1.38813 * 120.00119 * 333.30436 * 13 12 11 16 16 N 1.31618 * 119.99580 * 343.55205 * 15 13 12 17 17 Si 1.86796 * 119.99837 * 163.55336 * 15 13 12 18 18 H 1.48500 * 109.47155 * 90.00141 * 17 15 13 19 19 H 1.48503 * 109.47042 * 209.99744 * 17 15 13 20 20 H 1.48502 * 109.47247 * 329.99983 * 17 15 13 21 21 C 1.47151 * 118.03345 * 50.53743 * 12 11 9 22 22 C 1.53288 * 108.38873 * 309.46127 * 21 12 11 23 23 O 1.42962 * 109.50823 * 65.00503 * 9 8 7 24 24 N 1.46505 * 109.46482 * 240.00160 * 2 1 3 25 25 C 1.36343 * 125.63701 * 299.69455 * 24 2 1 26 26 C 1.34853 * 108.21555 * 179.83022 * 25 24 2 27 27 C 1.40896 * 107.41736 * 0.42398 * 26 25 24 28 28 C 1.34849 * 107.41781 * 359.73806 * 27 26 25 29 29 H 1.09002 * 109.47021 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46720 * 299.99745 * 1 2 3 31 31 H 1.08991 * 109.47505 * 59.99295 * 1 2 3 32 32 H 1.08996 * 109.46943 * 174.99706 * 4 2 1 33 33 H 1.08995 * 109.47219 * 54.99300 * 4 2 1 34 34 H 0.96995 * 119.99480 * 0.02562 * 7 5 4 35 35 H 1.09004 * 109.46798 * 60.00606 * 8 7 5 36 36 H 1.08995 * 109.47425 * 300.00149 * 8 7 5 37 37 H 1.09001 * 109.47240 * 180.12515 * 10 9 8 38 38 H 1.09004 * 109.47239 * 300.12331 * 10 9 8 39 39 H 1.08997 * 109.47556 * 60.12398 * 10 9 8 40 40 H 1.09000 * 109.67939 * 307.50216 * 11 9 8 41 41 H 1.08998 * 109.67890 * 68.01377 * 11 9 8 42 42 H 0.97005 * 119.99361 * 179.97438 * 16 15 13 43 43 H 1.09004 * 109.67871 * 189.73706 * 21 12 11 44 44 H 1.09002 * 109.68254 * 69.19321 * 21 12 11 45 45 H 1.08999 * 109.51584 * 172.22696 * 22 21 12 46 46 H 1.09004 * 109.51249 * 292.33325 * 22 21 12 47 47 H 1.07996 * 125.89087 * 359.95755 * 25 24 2 48 48 H 1.07997 * 126.29165 * 180.15904 * 26 25 24 49 49 H 1.07998 * 126.29167 * 179.72878 * 27 26 25 50 50 H 1.08000 * 125.89356 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.6415 0.0568 2.4765 6 8 1.0111 1.0867 2.3633 7 7 1.9847 -0.3922 3.7001 8 6 1.5976 0.3646 4.8932 9 6 2.1076 -0.3569 6.1424 10 6 1.5955 -1.7985 6.1461 11 6 1.6029 0.3690 7.3948 12 7 2.2554 -0.2271 8.5713 13 6 1.5214 -0.6377 9.6520 14 1 1.8940 -1.4255 10.2899 15 6 0.2986 -0.0413 9.9276 16 7 -0.0119 1.1106 9.3716 17 14 -0.9060 -0.8735 11.0876 18 1 -0.6509 -0.4166 12.4774 19 1 -2.2943 -0.5192 10.6971 20 1 -0.7305 -2.3461 11.0105 21 6 3.7199 -0.3693 8.5520 22 6 4.1215 -1.0591 7.2434 23 8 3.5372 -0.3578 6.1430 24 7 2.0182 -0.6906 -1.1963 25 6 1.7654 -1.9902 -1.5221 26 6 2.3796 -2.2586 -2.6922 27 6 3.0438 -1.0844 -3.0989 28 6 2.8054 -0.1416 -2.1648 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8898 32 1 3.1264 -0.7996 1.2054 33 1 1.6055 -1.7199 1.2950 34 1 2.4885 -1.2161 3.7906 35 1 0.5113 0.4436 4.9368 36 1 2.0330 1.3628 4.8474 37 1 1.9577 -2.3105 7.0376 38 1 0.5055 -1.7970 6.1456 39 1 1.9584 -2.3153 5.2577 40 1 1.8549 1.4276 7.3321 41 1 0.5221 0.2532 7.4757 42 1 -0.8665 1.5271 9.5639 43 1 4.0411 -0.9746 9.3997 44 1 4.1851 0.6150 8.6060 45 1 5.2071 -1.0505 7.1454 46 1 3.7648 -2.0891 7.2503 47 1 1.1735 -2.6842 -0.9439 48 1 2.3684 -3.2016 -3.2185 49 1 3.6353 -0.9621 -3.9942 50 1 3.1746 0.8732 -2.1808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108352620.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:04 Heat of formation + Delta-G solvation = -4.482962 kcal Electronic energy + Delta-G solvation = -29588.207768 eV Core-core repulsion = 25617.392732 eV Total energy + Delta-G solvation = -3970.815035 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.43199 -39.95727 -38.92189 -35.52652 -34.81150 -34.38907 -31.93060 -31.31501 -30.02322 -28.90325 -28.39990 -27.99794 -26.43423 -25.41051 -23.30083 -22.96678 -21.33506 -20.70844 -20.39715 -19.59155 -18.74374 -17.81294 -17.22304 -16.64920 -15.99401 -15.94747 -15.39017 -15.08889 -14.72624 -14.59779 -14.37929 -14.08038 -13.96195 -13.68451 -13.55735 -13.32533 -13.02117 -12.99710 -12.76742 -12.57806 -12.42238 -12.22695 -12.11600 -11.83419 -11.66339 -11.60876 -11.37146 -11.25692 -11.07604 -10.87870 -10.71869 -10.38265 -10.32126 -10.07464 -9.89004 -9.60500 -9.11671 -8.95185 -8.76667 -8.59610 -8.29881 -6.79421 -5.90350 -3.34131 2.13695 2.56639 2.63592 2.92694 3.28729 3.33714 3.37396 3.38274 4.17210 4.22891 4.38458 4.49535 4.67741 4.85063 4.96135 5.07496 5.08687 5.14141 5.22716 5.28186 5.39432 5.40071 5.44861 5.47195 5.59354 5.60197 5.68339 5.85117 5.86809 5.92714 5.98647 6.01585 6.06851 6.14503 6.19179 6.23732 6.37272 6.49095 6.59800 6.68349 6.76005 6.85913 7.00272 7.11258 7.24494 7.39476 7.51024 7.65372 7.80922 8.18755 8.27455 9.05091 9.68020 10.25251 11.17733 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021391 B = 0.002294 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.658710 B =12200.729084 C =12725.489551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.149 3.851 3 H 0.107 0.893 4 C -0.152 4.152 5 C 0.515 3.485 6 O -0.542 6.542 7 N -0.714 5.714 8 C 0.139 3.861 9 C 0.078 3.922 10 C -0.162 4.162 11 C 0.160 3.840 12 N -0.590 5.590 13 C -0.255 4.255 14 H 0.068 0.932 15 C 0.004 3.996 16 N -0.902 5.902 17 Si 0.903 3.097 18 H -0.286 1.286 19 H -0.288 1.288 20 H -0.279 1.279 21 C 0.109 3.891 22 C 0.046 3.954 23 O -0.385 6.385 24 N -0.442 5.442 25 C -0.014 4.014 26 C -0.205 4.205 27 C -0.206 4.206 28 C -0.015 4.015 29 H 0.057 0.943 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.403 0.597 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.041 0.959 40 H 0.029 0.971 41 H 0.096 0.904 42 H 0.256 0.744 43 H 0.061 0.939 44 H 0.026 0.974 45 H 0.080 0.920 46 H 0.048 0.952 47 H 0.157 0.843 48 H 0.132 0.868 49 H 0.132 0.868 50 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.937 -6.195 -18.809 20.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.047 3.953 3 H 0.125 0.875 4 C -0.193 4.193 5 C 0.300 3.700 6 O -0.421 6.421 7 N -0.366 5.366 8 C 0.015 3.985 9 C 0.037 3.963 10 C -0.219 4.219 11 C 0.033 3.967 12 N -0.314 5.314 13 C -0.384 4.384 14 H 0.086 0.914 15 C -0.195 4.195 16 N -0.546 5.546 17 Si 0.732 3.268 18 H -0.213 1.213 19 H -0.214 1.214 20 H -0.205 1.205 21 C -0.018 4.018 22 C -0.032 4.032 23 O -0.304 6.304 24 N -0.118 5.118 25 C -0.144 4.144 26 C -0.230 4.230 27 C -0.231 4.231 28 C -0.144 4.144 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.238 0.762 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.048 0.952 41 H 0.114 0.886 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.044 0.956 45 H 0.098 0.902 46 H 0.066 0.934 47 H 0.174 0.826 48 H 0.150 0.850 49 H 0.150 0.850 50 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.298 -5.081 -18.642 19.795 hybrid contribution -0.428 -0.924 0.950 1.393 sum 3.869 -6.005 -17.692 19.080 Atomic orbital electron populations 1.22291 0.92729 1.02825 1.04543 1.21109 0.96091 0.96658 0.81457 0.87522 1.22004 1.03847 1.00847 0.92602 1.20208 0.79653 0.85680 0.84479 1.90697 1.40233 1.24525 1.86611 1.46030 1.56964 1.27881 1.05675 1.21374 1.00079 0.95385 0.81616 1.22553 0.81608 0.95831 0.96353 1.22202 1.01729 0.96586 1.01402 1.21285 0.99463 0.93735 0.82193 1.43988 0.99548 1.72764 1.15099 1.19140 1.00946 1.13436 1.04893 0.91447 1.25055 1.00144 0.95361 0.98951 1.70010 1.22944 1.14985 1.46612 0.86296 0.80692 0.79151 0.80631 1.21294 1.21443 1.20462 1.21601 0.86889 0.97965 0.95308 1.23038 0.96607 0.95389 0.88141 1.87820 1.19345 1.76350 1.46903 1.44394 1.39138 1.10099 1.18125 1.21737 1.06818 0.86220 0.99637 1.20877 1.04884 0.99325 0.97906 1.20875 1.06933 0.94023 1.01224 1.21868 1.01144 0.99814 0.91620 0.92370 0.88455 0.92000 0.88152 0.88254 0.76213 0.89888 0.90736 0.90720 0.91853 0.94030 0.95250 0.88567 0.93401 0.92013 0.95638 0.90172 0.93383 0.82588 0.85034 0.85008 0.82405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 8.98 37.16 0.33 -1.27 16 2 C 0.15 1.41 2.67 -67.92 -0.18 1.23 16 3 H 0.11 1.07 7.88 -51.93 -0.41 0.66 16 4 C -0.15 -1.37 5.16 -27.88 -0.14 -1.51 16 5 C 0.51 6.39 7.55 -10.98 -0.08 6.31 16 6 O -0.54 -8.47 13.96 5.56 0.08 -8.40 16 7 N -0.71 -9.12 5.19 -60.29 -0.31 -9.43 16 8 C 0.14 2.22 4.85 -4.04 -0.02 2.20 16 9 C 0.08 1.37 0.78 -90.47 -0.07 1.30 16 10 C -0.16 -2.60 7.86 37.15 0.29 -2.31 16 11 C 0.16 3.60 4.11 -3.53 -0.01 3.59 16 12 N -0.59 -13.99 2.56 -171.83 -0.44 -14.43 16 13 C -0.25 -6.63 9.65 -15.06 -0.15 -6.77 16 14 H 0.07 1.72 7.88 -52.49 -0.41 1.30 16 15 C 0.00 0.10 4.95 -17.43 -0.09 0.02 16 16 N -0.90 -25.19 11.14 55.49 0.62 -24.57 16 17 Si 0.90 20.87 29.58 -169.99 -5.03 15.84 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 C 0.11 2.17 6.73 -3.54 -0.02 2.15 16 22 C 0.05 0.77 6.60 37.31 0.25 1.01 16 23 O -0.38 -6.78 10.17 -35.23 -0.36 -7.14 16 24 N -0.44 -4.28 2.62 -110.02 -0.29 -4.57 16 25 C -0.01 -0.13 10.45 -16.75 -0.18 -0.31 16 26 C -0.21 -2.02 10.86 -39.78 -0.43 -2.46 16 27 C -0.21 -2.04 10.86 -39.78 -0.43 -2.47 16 28 C -0.01 -0.14 11.39 -16.75 -0.19 -0.33 16 29 H 0.06 0.51 7.92 -51.93 -0.41 0.10 16 30 H 0.10 1.12 5.95 -51.93 -0.31 0.81 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.10 0.74 8.05 -51.93 -0.42 0.32 16 34 H 0.40 4.48 7.00 -40.82 -0.29 4.19 16 35 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.07 1.33 6.11 -51.93 -0.32 1.02 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.04 0.54 6.59 -51.93 -0.34 0.20 16 40 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 2.40 6.16 -51.93 -0.32 2.08 16 42 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 43 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 46 H 0.05 0.77 6.26 -51.93 -0.32 0.45 16 47 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 48 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 49 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 50 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 393.45 15.07 5.93 5.93 Total: -1.00 -30.32 393.45 -9.10 -39.43 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -8.17 Total: 6.98 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -1.13 Total: 0.36 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.42 Total: -53.00 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.28 Total: -15.53 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.32 -9.10 -39.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108352620.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.943 kcal (2) G-P(sol) polarization free energy of solvation -30.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds