Wall clock time and date at job start Tue Mar 31 2020 19:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47126 * 2 1 4 4 C 1.53001 * 109.47391 * 120.00832 * 2 1 3 5 5 C 1.50701 * 109.46671 * 294.99610 * 4 2 1 6 6 O 1.21283 * 120.00046 * 0.02562 * 5 4 2 7 7 N 1.34782 * 119.99986 * 179.97438 * 5 4 2 8 8 C 1.46495 * 119.99922 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.46922 * 180.02562 * 8 7 5 10 10 C 1.52992 * 109.55457 * 304.87757 * 9 8 7 11 11 C 1.53297 * 109.51246 * 184.74770 * 9 8 7 12 12 N 1.47149 * 108.38367 * 187.77545 * 11 9 8 13 13 C 1.36939 * 120.98120 * 230.55672 * 12 11 9 14 14 H 1.08001 * 119.99552 * 153.30577 * 13 12 11 15 15 C 1.38813 * 120.00119 * 333.30436 * 13 12 11 16 16 N 1.31618 * 119.99580 * 343.55205 * 15 13 12 17 17 Si 1.86796 * 119.99837 * 163.55336 * 15 13 12 18 18 H 1.48500 * 109.47155 * 90.00141 * 17 15 13 19 19 H 1.48503 * 109.47042 * 209.99744 * 17 15 13 20 20 H 1.48502 * 109.47247 * 329.99983 * 17 15 13 21 21 C 1.47151 * 118.03345 * 50.53743 * 12 11 9 22 22 C 1.53288 * 108.38873 * 309.46127 * 21 12 11 23 23 O 1.42962 * 109.50823 * 65.00503 * 9 8 7 24 24 N 1.46505 * 109.46482 * 240.00160 * 2 1 3 25 25 C 1.36343 * 125.63701 * 299.69455 * 24 2 1 26 26 C 1.34853 * 108.21555 * 179.83022 * 25 24 2 27 27 C 1.40896 * 107.41736 * 0.42398 * 26 25 24 28 28 C 1.34849 * 107.41781 * 359.73806 * 27 26 25 29 29 H 1.09002 * 109.47021 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46720 * 299.99745 * 1 2 3 31 31 H 1.08991 * 109.47505 * 59.99295 * 1 2 3 32 32 H 1.08996 * 109.46943 * 174.99706 * 4 2 1 33 33 H 1.08995 * 109.47219 * 54.99300 * 4 2 1 34 34 H 0.96995 * 119.99480 * 0.02562 * 7 5 4 35 35 H 1.09004 * 109.46798 * 60.00606 * 8 7 5 36 36 H 1.08995 * 109.47425 * 300.00149 * 8 7 5 37 37 H 1.09001 * 109.47240 * 180.12515 * 10 9 8 38 38 H 1.09004 * 109.47239 * 300.12331 * 10 9 8 39 39 H 1.08997 * 109.47556 * 60.12398 * 10 9 8 40 40 H 1.09000 * 109.67939 * 307.50216 * 11 9 8 41 41 H 1.08998 * 109.67890 * 68.01377 * 11 9 8 42 42 H 0.97005 * 119.99361 * 179.97438 * 16 15 13 43 43 H 1.09004 * 109.67871 * 189.73706 * 21 12 11 44 44 H 1.09002 * 109.68254 * 69.19321 * 21 12 11 45 45 H 1.08999 * 109.51584 * 172.22696 * 22 21 12 46 46 H 1.09004 * 109.51249 * 292.33325 * 22 21 12 47 47 H 1.07996 * 125.89087 * 359.95755 * 25 24 2 48 48 H 1.07997 * 126.29165 * 180.15904 * 26 25 24 49 49 H 1.07998 * 126.29167 * 179.72878 * 27 26 25 50 50 H 1.08000 * 125.89356 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.6415 0.0568 2.4765 6 8 1.0111 1.0867 2.3633 7 7 1.9847 -0.3922 3.7001 8 6 1.5976 0.3646 4.8932 9 6 2.1076 -0.3569 6.1424 10 6 1.5955 -1.7985 6.1461 11 6 1.6029 0.3690 7.3948 12 7 2.2554 -0.2271 8.5713 13 6 1.5214 -0.6377 9.6520 14 1 1.8940 -1.4255 10.2899 15 6 0.2986 -0.0413 9.9276 16 7 -0.0119 1.1106 9.3716 17 14 -0.9060 -0.8735 11.0876 18 1 -0.6509 -0.4166 12.4774 19 1 -2.2943 -0.5192 10.6971 20 1 -0.7305 -2.3461 11.0105 21 6 3.7199 -0.3693 8.5520 22 6 4.1215 -1.0591 7.2434 23 8 3.5372 -0.3578 6.1430 24 7 2.0182 -0.6906 -1.1963 25 6 1.7654 -1.9902 -1.5221 26 6 2.3796 -2.2586 -2.6922 27 6 3.0438 -1.0844 -3.0989 28 6 2.8054 -0.1416 -2.1648 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8898 32 1 3.1264 -0.7996 1.2054 33 1 1.6055 -1.7199 1.2950 34 1 2.4885 -1.2161 3.7906 35 1 0.5113 0.4436 4.9368 36 1 2.0330 1.3628 4.8474 37 1 1.9577 -2.3105 7.0376 38 1 0.5055 -1.7970 6.1456 39 1 1.9584 -2.3153 5.2577 40 1 1.8549 1.4276 7.3321 41 1 0.5221 0.2532 7.4757 42 1 -0.8665 1.5271 9.5639 43 1 4.0411 -0.9746 9.3997 44 1 4.1851 0.6150 8.6060 45 1 5.2071 -1.0505 7.1454 46 1 3.7648 -2.0891 7.2503 47 1 1.1735 -2.6842 -0.9439 48 1 2.3684 -3.2016 -3.2185 49 1 3.6353 -0.9621 -3.9942 50 1 3.1746 0.8732 -2.1808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108352620.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:03 Heat of formation + Delta-G solvation = -22.223691 kcal Electronic energy + Delta-G solvation = -29588.977063 eV Core-core repulsion = 25617.392732 eV Total energy + Delta-G solvation = -3971.584331 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.15583 -41.14035 -40.25733 -36.69608 -36.14840 -35.70393 -33.30308 -33.16447 -30.80959 -29.64222 -29.56572 -29.20714 -28.01071 -26.85423 -24.99452 -23.84358 -22.82862 -21.61739 -21.25074 -20.42229 -20.16413 -18.94573 -18.63456 -17.74417 -17.42254 -16.99009 -16.79221 -16.40132 -16.07547 -15.64978 -15.55861 -15.48622 -15.27582 -14.92165 -14.67636 -14.59145 -14.39926 -13.96658 -13.91469 -13.65235 -13.41093 -13.18967 -13.09522 -12.92659 -12.90745 -12.79760 -12.74109 -12.53900 -12.42835 -12.35592 -12.17606 -12.09695 -11.95046 -11.84572 -11.16031 -10.96121 -10.73995 -10.50239 -10.11121 -9.48782 -9.00075 -8.71550 -7.90479 -5.37473 1.42445 1.45222 1.47228 1.56204 1.58441 1.81402 2.21530 2.35969 2.48622 2.79289 3.24648 3.47325 3.50294 3.71709 3.82753 3.96550 4.02395 4.10650 4.15605 4.23770 4.41688 4.44967 4.45983 4.46684 4.52365 4.58030 4.64237 4.70519 4.71551 4.76735 4.80194 4.87701 4.96411 4.96935 5.04923 5.11841 5.19316 5.21339 5.36570 5.40080 5.46428 5.50419 5.53643 5.61223 6.16240 6.29075 6.36953 6.40768 6.51327 6.55441 7.06719 7.20309 7.75793 8.29771 9.15144 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021391 B = 0.002294 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.658710 B =12200.729084 C =12725.489551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.152 3.848 3 H 0.097 0.903 4 C -0.138 4.138 5 C 0.516 3.484 6 O -0.577 6.577 7 N -0.705 5.705 8 C 0.150 3.850 9 C 0.093 3.907 10 C -0.153 4.153 11 C 0.167 3.833 12 N -0.607 5.607 13 C -0.259 4.259 14 H 0.073 0.927 15 C -0.050 4.050 16 N -0.936 5.936 17 Si 0.966 3.034 18 H -0.287 1.287 19 H -0.294 1.294 20 H -0.266 1.266 21 C 0.101 3.899 22 C 0.053 3.947 23 O -0.386 6.386 24 N -0.443 5.443 25 C -0.019 4.019 26 C -0.222 4.222 27 C -0.220 4.220 28 C -0.029 4.029 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.115 0.885 33 H 0.124 0.876 34 H 0.415 0.585 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.080 0.920 40 H -0.009 1.009 41 H 0.067 0.933 42 H 0.250 0.750 43 H 0.071 0.929 44 H 0.011 0.989 45 H 0.117 0.883 46 H 0.061 0.939 47 H 0.177 0.823 48 H 0.143 0.857 49 H 0.142 0.858 50 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.001 -8.828 -19.994 22.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.050 3.950 3 H 0.116 0.884 4 C -0.179 4.179 5 C 0.303 3.697 6 O -0.457 6.457 7 N -0.358 5.358 8 C 0.025 3.975 9 C 0.052 3.948 10 C -0.210 4.210 11 C 0.040 3.960 12 N -0.331 5.331 13 C -0.388 4.388 14 H 0.091 0.909 15 C -0.245 4.245 16 N -0.582 5.582 17 Si 0.794 3.206 18 H -0.214 1.214 19 H -0.221 1.221 20 H -0.191 1.191 21 C -0.024 4.024 22 C -0.024 4.024 23 O -0.305 6.305 24 N -0.119 5.119 25 C -0.148 4.148 26 C -0.247 4.247 27 C -0.245 4.245 28 C -0.158 4.158 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.133 0.867 33 H 0.143 0.857 34 H 0.252 0.748 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.009 0.991 41 H 0.085 0.915 42 H 0.059 0.941 43 H 0.090 0.910 44 H 0.029 0.971 45 H 0.134 0.866 46 H 0.080 0.920 47 H 0.195 0.805 48 H 0.161 0.839 49 H 0.160 0.840 50 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 5.409 -7.756 -19.845 21.982 hybrid contribution -0.686 -0.055 1.318 1.487 sum 4.723 -7.811 -18.527 20.653 Atomic orbital electron populations 1.22204 0.92981 1.03278 1.03395 1.21009 0.95820 0.96390 0.81789 0.88450 1.21937 1.04787 1.01092 0.90046 1.20787 0.78586 0.85298 0.85037 1.90700 1.41695 1.26264 1.87058 1.45843 1.57155 1.27983 1.04786 1.20992 0.99240 0.94727 0.82513 1.22198 0.81788 0.96444 0.94379 1.22108 1.01303 0.95109 1.02519 1.21067 0.97940 0.92414 0.84591 1.44245 1.01235 1.72599 1.15029 1.19486 1.01175 1.13011 1.05172 0.90947 1.25796 1.01882 0.95935 1.00911 1.70180 1.23012 1.16537 1.48488 0.85305 0.78133 0.78738 0.78449 1.21407 1.22064 1.19108 1.21823 0.84607 0.97893 0.98112 1.23093 0.98568 0.95193 0.85555 1.87832 1.18864 1.76728 1.47073 1.44397 1.39194 1.10272 1.18027 1.22123 1.06666 0.86285 0.99761 1.21169 1.05182 0.99888 0.98429 1.21156 1.07248 0.94309 1.01760 1.22204 1.01325 1.00594 0.91716 0.91091 0.90455 0.92244 0.86680 0.85748 0.74780 0.90898 0.92686 0.92164 0.92528 0.90152 0.99076 0.91481 0.94065 0.91044 0.97092 0.86566 0.92041 0.80539 0.83923 0.84048 0.81110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 8.98 71.98 0.65 -2.25 16 2 C 0.15 2.61 2.67 44.99 0.12 2.73 16 3 H 0.10 1.86 7.88 -2.39 -0.02 1.84 16 4 C -0.14 -2.08 5.16 29.85 0.15 -1.93 16 5 C 0.52 11.97 7.55 87.66 0.66 12.63 16 6 O -0.58 -17.91 13.96 -3.04 -0.04 -17.95 16 7 N -0.71 -16.63 5.19 -463.05 -2.40 -19.03 16 8 C 0.15 4.79 4.85 86.38 0.42 5.21 16 9 C 0.09 3.23 0.78 -10.69 -0.01 3.22 16 10 C -0.15 -4.61 7.86 71.98 0.57 -4.05 16 11 C 0.17 7.78 4.11 86.36 0.35 8.13 16 12 N -0.61 -29.11 2.56 -697.55 -1.79 -30.90 16 13 C -0.26 -13.54 9.65 84.03 0.81 -12.73 16 14 H 0.07 3.65 7.88 -2.91 -0.02 3.63 16 15 C -0.05 -2.69 4.95 84.86 0.42 -2.27 16 16 N -0.94 -54.34 11.14 21.65 0.24 -54.10 16 17 Si 0.97 43.42 29.58 68.60 2.03 45.45 16 18 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 20 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 21 C 0.10 3.96 6.73 86.35 0.58 4.54 16 22 C 0.05 1.62 6.60 72.08 0.48 2.10 16 23 O -0.39 -12.84 10.17 -148.98 -1.52 -14.36 16 24 N -0.44 -7.62 2.62 -501.99 -1.31 -8.94 16 25 C -0.02 -0.30 10.45 83.21 0.87 0.57 16 26 C -0.22 -3.93 10.86 22.14 0.24 -3.69 16 27 C -0.22 -4.02 10.86 22.14 0.24 -3.78 16 28 C -0.03 -0.51 11.39 83.21 0.95 0.43 16 29 H 0.07 1.07 7.92 -2.39 -0.02 1.05 16 30 H 0.08 1.75 5.95 -2.39 -0.01 1.74 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.12 1.32 8.05 -2.39 -0.02 1.30 16 34 H 0.41 7.75 7.00 -92.71 -0.65 7.10 16 35 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 36 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.06 2.02 6.11 -2.39 -0.01 2.00 16 38 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.08 1.79 6.59 -2.39 -0.02 1.77 16 40 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 41 H 0.07 3.51 6.16 -2.39 -0.01 3.49 16 42 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 43 H 0.07 2.62 7.96 -2.39 -0.02 2.60 16 44 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 46 H 0.06 1.75 6.26 -2.38 -0.01 1.74 16 47 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 48 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 49 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 50 H 0.17 2.41 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -67.78 393.45 2.99 -64.79 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.28 Total: 26.18 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 7.50 Total: 8.85 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -5.26 Total: -112.97 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -1.56 Total: -32.31 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -67.78 2.99 -64.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108352620.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.571 kcal (2) G-P(sol) polarization free energy of solvation -67.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds