Wall clock time and date at job start Tue Mar 31 2020 19:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46907 * 2 1 4 4 C 1.53002 * 109.46809 * 240.00245 * 2 1 3 5 5 C 1.50694 * 109.47117 * 65.00115 * 4 2 1 6 6 O 1.21281 * 120.00586 * 359.97438 * 5 4 2 7 7 N 1.34782 * 119.99869 * 179.97438 * 5 4 2 8 8 C 1.46499 * 119.99795 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47060 * 180.02562 * 8 7 5 10 10 C 1.53011 * 109.51044 * 60.10614 * 9 8 7 11 11 C 1.53290 * 109.51589 * 180.25438 * 9 8 7 12 12 N 1.47232 * 108.40967 * 172.23172 * 11 9 8 13 13 C 1.36937 * 121.03256 * 129.46000 * 12 11 9 14 14 H 1.07999 * 119.99830 * 333.77469 * 13 12 11 15 15 C 1.38814 * 119.99671 * 153.77042 * 13 12 11 16 16 N 1.31617 * 119.99660 * 160.02496 * 15 13 12 17 17 Si 1.86793 * 120.00266 * 340.02129 * 15 13 12 18 18 H 1.48503 * 109.46760 * 91.88567 * 17 15 13 19 19 H 1.48497 * 109.47347 * 211.88792 * 17 15 13 20 20 H 1.48498 * 109.47201 * 331.89168 * 17 15 13 21 21 C 1.47155 * 117.98347 * 309.49012 * 12 11 9 22 22 C 1.53294 * 108.41729 * 50.51829 * 21 12 11 23 23 O 1.42960 * 109.51742 * 300.00673 * 9 8 7 24 24 N 1.46493 * 109.47196 * 120.00227 * 2 1 3 25 25 C 1.36345 * 125.63730 * 59.69312 * 24 2 1 26 26 C 1.34846 * 108.21967 * 179.83302 * 25 24 2 27 27 C 1.40888 * 107.41639 * 0.42127 * 26 25 24 28 28 C 1.34845 * 107.42030 * 359.73812 * 27 26 25 29 29 H 1.09001 * 109.47299 * 299.99661 * 1 2 3 30 30 H 1.08998 * 109.47470 * 59.99501 * 1 2 3 31 31 H 1.08998 * 109.47323 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47410 * 304.99514 * 4 2 1 33 33 H 1.09005 * 109.46573 * 184.99880 * 4 2 1 34 34 H 0.96992 * 120.00110 * 0.02562 * 7 5 4 35 35 H 1.09004 * 109.47116 * 60.00866 * 8 7 5 36 36 H 1.08996 * 109.47601 * 300.00641 * 8 7 5 37 37 H 1.09001 * 109.46460 * 299.89523 * 10 9 8 38 38 H 1.08998 * 109.46862 * 59.89749 * 10 9 8 39 39 H 1.08998 * 109.46926 * 179.89857 * 10 9 8 40 40 H 1.09001 * 109.68378 * 291.95518 * 11 9 8 41 41 H 1.09000 * 109.68200 * 52.50646 * 11 9 8 42 42 H 0.97002 * 120.00062 * 179.97438 * 16 15 13 43 43 H 1.08998 * 109.68049 * 290.77118 * 21 12 11 44 44 H 1.09003 * 109.67731 * 170.25941 * 21 12 11 45 45 H 1.08998 * 109.51349 * 67.59796 * 22 21 12 46 46 H 1.08996 * 109.51070 * 187.70400 * 22 21 12 47 47 H 1.08004 * 125.89014 * 359.96302 * 25 24 2 48 48 H 1.08006 * 126.29461 * 180.16085 * 26 25 24 49 49 H 1.08003 * 126.29448 * 179.73126 * 27 26 25 50 50 H 1.07999 * 125.89443 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 8 1.0109 1.0870 -2.3633 7 7 1.9852 -0.3913 -3.7002 8 6 1.5971 0.3651 -4.8932 9 6 2.1071 -0.3560 -6.1425 10 6 1.4960 -1.7572 -6.2091 11 6 1.7071 0.4379 -7.3913 12 7 2.3650 -0.1704 -8.5596 13 6 1.6506 -0.4977 -9.6810 14 1 0.5964 -0.7191 -9.6042 15 6 2.2816 -0.5450 -10.9166 16 7 1.7374 -1.2181 -11.9081 17 14 3.9029 0.3469 -11.1721 18 1 5.0278 -0.5792 -10.8851 19 1 3.9938 0.8155 -12.5783 20 1 3.9760 1.5133 -10.2559 21 6 3.8139 -0.4169 -8.4855 22 6 4.1112 -1.1693 -7.1835 23 8 3.5319 -0.4588 -6.0865 24 7 2.0183 -0.6906 1.1961 25 6 1.7559 -1.9868 1.5278 26 6 2.3799 -2.2587 2.6918 27 6 3.0441 -1.0847 3.0986 28 6 2.8055 -0.1418 2.1646 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6054 -1.7197 -1.2952 33 1 3.1263 -0.7994 -1.2056 34 1 2.4890 -1.2151 -3.7908 35 1 2.0312 1.3639 -4.8473 36 1 0.5108 0.4427 -4.9370 37 1 1.7847 -2.3219 -5.3225 38 1 0.4097 -1.6781 -6.2518 39 1 1.8584 -2.2697 -7.1002 40 1 0.6252 0.4009 -7.5189 41 1 2.0297 1.4738 -7.2867 42 1 2.1781 -1.2509 -12.7716 43 1 4.3485 0.5329 -8.4910 44 1 4.1276 -1.0197 -9.3378 45 1 3.6831 -2.1704 -7.2356 46 1 5.1897 -1.2413 -7.0428 47 1 1.1540 -2.6774 0.9556 48 1 2.3687 -3.2019 3.2181 49 1 3.6356 -0.9623 3.9939 50 1 3.1740 0.8733 2.1811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108352622.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:11 Heat of formation + Delta-G solvation = 1.183759 kcal Electronic energy + Delta-G solvation = -29457.320607 eV Core-core repulsion = 25486.751300 eV Total energy + Delta-G solvation = -3970.569308 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.50010 -40.14601 -39.18473 -35.70355 -35.01855 -34.51802 -32.34089 -31.50457 -30.12348 -28.97023 -28.62913 -28.35686 -26.61870 -25.74190 -23.26873 -23.08144 -21.64948 -20.79896 -20.51318 -19.68134 -19.09713 -17.91419 -17.22921 -16.78986 -16.29843 -16.10095 -15.59802 -15.46561 -14.82975 -14.76273 -14.60759 -14.19436 -14.01750 -13.94663 -13.77771 -13.69464 -13.15387 -13.10016 -12.80885 -12.51420 -12.47797 -12.41045 -12.27986 -12.05851 -11.91035 -11.70658 -11.68503 -11.52538 -11.45843 -11.10006 -10.90381 -10.45445 -10.36370 -10.06498 -9.75818 -9.60455 -9.48657 -9.14249 -8.82850 -8.65492 -8.35479 -7.10636 -6.06030 -3.43699 2.07443 2.41926 2.54354 2.87523 3.17975 3.21777 3.40968 3.43258 3.93035 4.13509 4.39973 4.41650 4.56571 4.65235 4.77621 4.86355 5.02218 5.04352 5.05908 5.12981 5.14157 5.21838 5.29925 5.32893 5.41213 5.52052 5.60424 5.62276 5.69750 5.73619 5.77021 5.87691 5.90818 5.99131 6.09448 6.12899 6.13871 6.14997 6.32227 6.39444 6.41176 6.49186 6.65492 6.80332 7.05236 7.18366 7.34289 7.52505 7.76446 8.02783 8.19049 8.76686 9.57834 9.93426 11.09387 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.029878 B = 0.002128 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.924663 B =13157.288315 C =13383.003058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.149 3.851 3 H 0.106 0.894 4 C -0.153 4.153 5 C 0.517 3.483 6 O -0.543 6.543 7 N -0.714 5.714 8 C 0.138 3.862 9 C 0.086 3.914 10 C -0.167 4.167 11 C 0.131 3.869 12 N -0.603 5.603 13 C -0.261 4.261 14 H 0.089 0.911 15 C 0.024 3.976 16 N -0.906 5.906 17 Si 0.884 3.116 18 H -0.288 1.288 19 H -0.302 1.302 20 H -0.271 1.271 21 C 0.089 3.911 22 C 0.046 3.954 23 O -0.380 6.380 24 N -0.443 5.443 25 C -0.014 4.014 26 C -0.204 4.204 27 C -0.205 4.205 28 C -0.015 4.015 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.405 0.595 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.047 0.953 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.034 0.966 42 H 0.264 0.736 43 H 0.034 0.966 44 H 0.081 0.919 45 H 0.056 0.944 46 H 0.085 0.915 47 H 0.157 0.843 48 H 0.132 0.868 49 H 0.132 0.868 50 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.546 -1.527 24.673 24.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.047 3.953 3 H 0.124 0.876 4 C -0.193 4.193 5 C 0.302 3.698 6 O -0.421 6.421 7 N -0.365 5.365 8 C 0.014 3.986 9 C 0.045 3.955 10 C -0.225 4.225 11 C 0.004 3.996 12 N -0.328 5.328 13 C -0.389 4.389 14 H 0.106 0.894 15 C -0.175 4.175 16 N -0.548 5.548 17 Si 0.715 3.285 18 H -0.216 1.216 19 H -0.230 1.230 20 H -0.196 1.196 21 C -0.037 4.037 22 C -0.032 4.032 23 O -0.300 6.300 24 N -0.118 5.118 25 C -0.144 4.144 26 C -0.229 4.229 27 C -0.230 4.230 28 C -0.145 4.145 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.240 0.760 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.052 0.948 42 H 0.074 0.926 43 H 0.052 0.948 44 H 0.099 0.901 45 H 0.075 0.925 46 H 0.103 0.897 47 H 0.174 0.826 48 H 0.150 0.850 49 H 0.150 0.850 50 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.050 -0.571 24.359 24.388 hybrid contribution 1.195 -0.126 -0.665 1.373 sum 2.245 -0.697 23.694 23.810 Atomic orbital electron populations 1.22290 0.92744 1.02853 1.04508 1.21094 0.96067 0.96636 0.81500 0.87554 1.22004 1.03959 1.00867 0.92490 1.20218 0.79488 0.85623 0.84455 1.90694 1.40268 1.24521 1.86624 1.45924 1.57079 1.28016 1.05500 1.21379 0.99945 0.95430 0.81846 1.22236 0.82138 0.96074 0.95042 1.22262 1.01383 0.96464 1.02346 1.21473 0.97969 0.94271 0.85895 1.44317 1.03204 1.71175 1.14097 1.18881 0.95236 1.41278 0.83511 0.89388 1.25248 0.98029 0.98870 0.95389 1.69816 1.40538 1.41071 1.03398 0.86969 0.84073 0.81154 0.76323 1.21626 1.23014 1.19591 1.22028 0.86374 0.98245 0.97035 1.23094 0.97208 0.95445 0.87463 1.87834 1.19183 1.77120 1.45842 1.44371 1.39088 1.10316 1.18066 1.21737 1.06606 0.86332 0.99752 1.20885 1.04632 0.99325 0.98066 1.20882 1.06933 0.93961 1.01206 1.21865 1.01299 0.99783 0.91514 0.91963 0.88542 0.92329 0.88153 0.88058 0.75972 0.90681 0.89900 0.93399 0.91736 0.90158 0.90794 0.94837 0.92626 0.94817 0.90071 0.92544 0.89661 0.82566 0.84995 0.84979 0.82406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 8.97 37.16 0.33 -1.08 16 2 C 0.15 1.26 2.67 -67.93 -0.18 1.07 16 3 H 0.11 0.95 7.88 -51.93 -0.41 0.54 16 4 C -0.15 -1.19 5.17 -27.88 -0.14 -1.33 16 5 C 0.52 5.53 7.55 -10.99 -0.08 5.45 16 6 O -0.54 -7.44 13.96 5.56 0.08 -7.36 16 7 N -0.71 -7.71 5.15 -60.30 -0.31 -8.02 16 8 C 0.14 1.78 4.82 -4.04 -0.02 1.76 16 9 C 0.09 1.29 0.76 -90.47 -0.07 1.23 16 10 C -0.17 -2.37 7.92 37.16 0.29 -2.07 16 11 C 0.13 2.42 5.41 -3.49 -0.02 2.40 16 12 N -0.60 -13.49 2.36 -171.76 -0.41 -13.90 16 13 C -0.26 -6.92 10.10 -15.06 -0.15 -7.07 16 14 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 15 C 0.02 0.67 5.26 -17.43 -0.09 0.57 16 16 N -0.91 -26.81 13.97 55.49 0.78 -26.04 16 17 Si 0.88 21.71 24.28 -169.99 -4.13 17.58 16 18 H -0.29 -6.76 6.58 56.52 0.37 -6.39 16 19 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 20 H -0.27 -6.62 6.54 56.52 0.37 -6.25 16 21 C 0.09 1.84 4.38 -3.53 -0.02 1.82 16 22 C 0.05 0.76 6.60 37.31 0.25 1.00 16 23 O -0.38 -6.09 9.97 -35.23 -0.35 -6.44 16 24 N -0.44 -3.93 2.62 -110.03 -0.29 -4.21 16 25 C -0.01 -0.13 10.45 -16.75 -0.18 -0.30 16 26 C -0.20 -1.90 10.86 -39.78 -0.43 -2.33 16 27 C -0.21 -1.92 10.86 -39.78 -0.43 -2.35 16 28 C -0.01 -0.13 11.39 -16.75 -0.19 -0.32 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.10 0.97 5.95 -51.93 -0.31 0.66 16 31 H 0.06 0.44 7.91 -51.93 -0.41 0.03 16 32 H 0.10 0.64 8.06 -51.93 -0.42 0.22 16 33 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.40 3.85 7.20 -40.82 -0.29 3.56 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 0.56 6.87 -51.93 -0.36 0.20 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 1.36 6.12 -51.93 -0.32 1.05 16 40 H 0.07 1.33 7.96 -51.93 -0.41 0.92 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.03 0.72 6.86 -51.93 -0.36 0.36 16 44 H 0.08 1.81 4.60 -51.93 -0.24 1.58 16 45 H 0.06 0.92 6.25 -51.93 -0.32 0.59 16 46 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.16 1.05 8.06 -52.48 -0.42 0.63 16 48 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 49 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 50 H 0.16 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 386.97 15.07 5.83 5.83 Total: -1.00 -31.38 386.97 -8.05 -39.43 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -8.12 Total: 4.67 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -1.13 Total: -1.54 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: -0.23 Total: -52.17 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.27 Total: -13.81 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.13 Total: 17.58 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.38 -8.05 -39.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108352622.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.617 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds