Wall clock time and date at job start Tue Mar 31 2020 19:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46907 * 2 1 4 4 C 1.53002 * 109.46809 * 240.00245 * 2 1 3 5 5 C 1.50694 * 109.47117 * 65.00115 * 4 2 1 6 6 O 1.21281 * 120.00586 * 359.97438 * 5 4 2 7 7 N 1.34782 * 119.99869 * 179.97438 * 5 4 2 8 8 C 1.46499 * 119.99795 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47060 * 180.02562 * 8 7 5 10 10 C 1.53011 * 109.51044 * 60.10614 * 9 8 7 11 11 C 1.53290 * 109.51589 * 180.25438 * 9 8 7 12 12 N 1.47232 * 108.40967 * 172.23172 * 11 9 8 13 13 C 1.36937 * 121.03256 * 129.46000 * 12 11 9 14 14 H 1.07999 * 119.99830 * 333.77469 * 13 12 11 15 15 C 1.38814 * 119.99671 * 153.77042 * 13 12 11 16 16 N 1.31617 * 119.99660 * 160.02496 * 15 13 12 17 17 Si 1.86793 * 120.00266 * 340.02129 * 15 13 12 18 18 H 1.48503 * 109.46760 * 91.88567 * 17 15 13 19 19 H 1.48497 * 109.47347 * 211.88792 * 17 15 13 20 20 H 1.48498 * 109.47201 * 331.89168 * 17 15 13 21 21 C 1.47155 * 117.98347 * 309.49012 * 12 11 9 22 22 C 1.53294 * 108.41729 * 50.51829 * 21 12 11 23 23 O 1.42960 * 109.51742 * 300.00673 * 9 8 7 24 24 N 1.46493 * 109.47196 * 120.00227 * 2 1 3 25 25 C 1.36345 * 125.63730 * 59.69312 * 24 2 1 26 26 C 1.34846 * 108.21967 * 179.83302 * 25 24 2 27 27 C 1.40888 * 107.41639 * 0.42127 * 26 25 24 28 28 C 1.34845 * 107.42030 * 359.73812 * 27 26 25 29 29 H 1.09001 * 109.47299 * 299.99661 * 1 2 3 30 30 H 1.08998 * 109.47470 * 59.99501 * 1 2 3 31 31 H 1.08998 * 109.47323 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47410 * 304.99514 * 4 2 1 33 33 H 1.09005 * 109.46573 * 184.99880 * 4 2 1 34 34 H 0.96992 * 120.00110 * 0.02562 * 7 5 4 35 35 H 1.09004 * 109.47116 * 60.00866 * 8 7 5 36 36 H 1.08996 * 109.47601 * 300.00641 * 8 7 5 37 37 H 1.09001 * 109.46460 * 299.89523 * 10 9 8 38 38 H 1.08998 * 109.46862 * 59.89749 * 10 9 8 39 39 H 1.08998 * 109.46926 * 179.89857 * 10 9 8 40 40 H 1.09001 * 109.68378 * 291.95518 * 11 9 8 41 41 H 1.09000 * 109.68200 * 52.50646 * 11 9 8 42 42 H 0.97002 * 120.00062 * 179.97438 * 16 15 13 43 43 H 1.08998 * 109.68049 * 290.77118 * 21 12 11 44 44 H 1.09003 * 109.67731 * 170.25941 * 21 12 11 45 45 H 1.08998 * 109.51349 * 67.59796 * 22 21 12 46 46 H 1.08996 * 109.51070 * 187.70400 * 22 21 12 47 47 H 1.08004 * 125.89014 * 359.96302 * 25 24 2 48 48 H 1.08006 * 126.29461 * 180.16085 * 26 25 24 49 49 H 1.08003 * 126.29448 * 179.73126 * 27 26 25 50 50 H 1.07999 * 125.89443 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 8 1.0109 1.0870 -2.3633 7 7 1.9852 -0.3913 -3.7002 8 6 1.5971 0.3651 -4.8932 9 6 2.1071 -0.3560 -6.1425 10 6 1.4960 -1.7572 -6.2091 11 6 1.7071 0.4379 -7.3913 12 7 2.3650 -0.1704 -8.5596 13 6 1.6506 -0.4977 -9.6810 14 1 0.5964 -0.7191 -9.6042 15 6 2.2816 -0.5450 -10.9166 16 7 1.7374 -1.2181 -11.9081 17 14 3.9029 0.3469 -11.1721 18 1 5.0278 -0.5792 -10.8851 19 1 3.9938 0.8155 -12.5783 20 1 3.9760 1.5133 -10.2559 21 6 3.8139 -0.4169 -8.4855 22 6 4.1112 -1.1693 -7.1835 23 8 3.5319 -0.4588 -6.0865 24 7 2.0183 -0.6906 1.1961 25 6 1.7559 -1.9868 1.5278 26 6 2.3799 -2.2587 2.6918 27 6 3.0441 -1.0847 3.0986 28 6 2.8055 -0.1418 2.1646 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6054 -1.7197 -1.2952 33 1 3.1263 -0.7994 -1.2056 34 1 2.4890 -1.2151 -3.7908 35 1 2.0312 1.3639 -4.8473 36 1 0.5108 0.4427 -4.9370 37 1 1.7847 -2.3219 -5.3225 38 1 0.4097 -1.6781 -6.2518 39 1 1.8584 -2.2697 -7.1002 40 1 0.6252 0.4009 -7.5189 41 1 2.0297 1.4738 -7.2867 42 1 2.1781 -1.2509 -12.7716 43 1 4.3485 0.5329 -8.4910 44 1 4.1276 -1.0197 -9.3378 45 1 3.6831 -2.1704 -7.2356 46 1 5.1897 -1.2413 -7.0428 47 1 1.1540 -2.6774 0.9556 48 1 2.3687 -3.2019 3.2181 49 1 3.6356 -0.9623 3.9939 50 1 3.1740 0.8733 2.1811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108352622.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:10 Heat of formation + Delta-G solvation = -18.718582 kcal Electronic energy + Delta-G solvation = -29458.183638 eV Core-core repulsion = 25486.751300 eV Total energy + Delta-G solvation = -3971.432338 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.15446 -41.20894 -40.34719 -36.88684 -36.15580 -35.67077 -33.78468 -33.24532 -30.83392 -29.97857 -29.60067 -29.21093 -28.08031 -27.01205 -24.82402 -23.96402 -23.08028 -21.59535 -21.25678 -20.57259 -20.22934 -18.98154 -18.61245 -17.92735 -17.39221 -17.27994 -16.99959 -16.42199 -15.99627 -15.88281 -15.71781 -15.53856 -15.47665 -15.07877 -14.79066 -14.46347 -14.30717 -14.06347 -13.93314 -13.82357 -13.64159 -13.43020 -13.28552 -13.09687 -12.95798 -12.91156 -12.74087 -12.60090 -12.37761 -12.32994 -12.15060 -12.10002 -12.08340 -11.57046 -11.29169 -11.08913 -10.93141 -10.49565 -10.08291 -9.48779 -9.00344 -8.96146 -8.19584 -5.52540 1.25322 1.39740 1.42270 1.47186 1.59702 1.82204 2.21084 2.35999 2.37454 2.67953 3.00434 3.20877 3.48798 3.72581 3.78953 3.85361 3.92664 3.98233 4.16074 4.23758 4.24391 4.28797 4.44584 4.44999 4.46987 4.53886 4.57338 4.66215 4.67458 4.71035 4.75318 4.78952 4.84186 4.88239 4.93670 4.97244 5.01409 5.05189 5.20135 5.37392 5.41250 5.46177 5.50329 5.77500 6.07920 6.15662 6.21942 6.40224 6.51592 6.55832 6.81037 7.20456 7.53729 7.94301 8.99583 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.029878 B = 0.002128 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.924663 B =13157.288315 C =13383.003058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.152 3.848 3 H 0.098 0.902 4 C -0.141 4.141 5 C 0.519 3.481 6 O -0.574 6.574 7 N -0.708 5.708 8 C 0.148 3.852 9 C 0.097 3.903 10 C -0.161 4.161 11 C 0.123 3.877 12 N -0.616 5.616 13 C -0.243 4.243 14 H 0.059 0.941 15 C -0.034 4.034 16 N -0.953 5.953 17 Si 0.944 3.056 18 H -0.269 1.269 19 H -0.313 1.313 20 H -0.269 1.269 21 C 0.081 3.919 22 C 0.055 3.945 23 O -0.376 6.376 24 N -0.443 5.443 25 C -0.018 4.018 26 C -0.223 4.223 27 C -0.221 4.221 28 C -0.028 4.028 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.123 0.877 33 H 0.112 0.888 34 H 0.414 0.586 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.033 0.967 42 H 0.262 0.738 43 H 0.032 0.968 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.118 0.882 47 H 0.178 0.822 48 H 0.142 0.858 49 H 0.141 0.859 50 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.863 -2.107 27.032 27.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.050 3.950 3 H 0.116 0.884 4 C -0.181 4.181 5 C 0.306 3.694 6 O -0.454 6.454 7 N -0.360 5.360 8 C 0.023 3.977 9 C 0.056 3.944 10 C -0.218 4.218 11 C -0.003 4.003 12 N -0.341 5.341 13 C -0.372 4.372 14 H 0.077 0.923 15 C -0.229 4.229 16 N -0.599 5.599 17 Si 0.774 3.226 18 H -0.196 1.196 19 H -0.242 1.242 20 H -0.194 1.194 21 C -0.044 4.044 22 C -0.023 4.023 23 O -0.295 6.295 24 N -0.119 5.119 25 C -0.148 4.148 26 C -0.248 4.248 27 C -0.246 4.246 28 C -0.158 4.158 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.141 0.859 33 H 0.131 0.869 34 H 0.251 0.749 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.051 0.949 42 H 0.071 0.929 43 H 0.050 0.950 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.136 0.864 47 H 0.195 0.805 48 H 0.160 0.840 49 H 0.158 0.842 50 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 2.397 -1.159 26.778 26.910 hybrid contribution 0.697 0.076 -1.307 1.483 sum 3.094 -1.083 25.471 25.681 Atomic orbital electron populations 1.22207 0.92870 1.03259 1.03493 1.21029 0.95887 0.96385 0.81737 0.88370 1.21941 1.04674 1.01160 0.90345 1.20651 0.78573 0.85232 0.84936 1.90697 1.41660 1.26061 1.87026 1.45809 1.57164 1.28123 1.04887 1.21125 0.99995 0.94803 0.81773 1.22076 0.81904 0.96185 0.94190 1.22190 1.01420 0.95773 1.02418 1.21672 0.97778 0.94698 0.86138 1.44396 1.04046 1.71765 1.13910 1.18812 0.94357 1.39088 0.84958 0.92330 1.25833 1.01578 1.00095 0.95367 1.69939 1.42662 1.43386 1.03943 0.85983 0.81191 0.80129 0.75297 1.19583 1.24190 1.19424 1.22123 0.84997 0.98391 0.98923 1.23032 0.99226 0.94754 0.85251 1.87856 1.19464 1.77034 1.45190 1.44403 1.39032 1.10432 1.18044 1.22111 1.06414 0.86470 0.99794 1.21168 1.05075 0.99855 0.98688 1.21156 1.07344 0.94313 1.01786 1.22198 1.01444 1.00537 0.91590 0.92354 0.90118 0.91195 0.85918 0.86944 0.74866 0.91726 0.89481 0.90229 0.91480 0.93025 0.91010 0.94888 0.92913 0.95035 0.91845 0.92122 0.86419 0.80523 0.84044 0.84154 0.81042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 8.97 71.98 0.65 -1.79 16 2 C 0.15 2.22 2.67 44.99 0.12 2.34 16 3 H 0.10 1.61 7.88 -2.38 -0.02 1.59 16 4 C -0.14 -1.74 5.17 29.85 0.15 -1.59 16 5 C 0.52 9.75 7.55 87.65 0.66 10.42 16 6 O -0.57 -14.83 13.96 -3.03 -0.04 -14.87 16 7 N -0.71 -13.09 5.15 -463.07 -2.39 -15.47 16 8 C 0.15 3.49 4.82 86.38 0.42 3.91 16 9 C 0.10 2.72 0.76 -10.69 -0.01 2.71 16 10 C -0.16 -4.19 7.92 71.99 0.57 -3.62 16 11 C 0.12 4.45 5.41 86.34 0.47 4.91 16 12 N -0.62 -27.31 2.36 -697.34 -1.65 -28.95 16 13 C -0.24 -13.11 10.10 84.03 0.85 -12.26 16 14 H 0.06 3.44 8.06 -2.91 -0.02 3.42 16 15 C -0.03 -1.91 5.26 84.86 0.45 -1.46 16 16 N -0.95 -58.11 13.97 21.65 0.30 -57.81 16 17 Si 0.94 45.35 24.28 68.60 1.67 47.02 16 18 H -0.27 -11.96 6.58 99.48 0.65 -11.30 16 19 H -0.31 -15.45 7.11 99.48 0.71 -14.75 16 20 H -0.27 -12.68 6.54 99.48 0.65 -12.03 16 21 C 0.08 3.21 4.38 86.35 0.38 3.58 16 22 C 0.06 1.66 6.60 72.08 0.48 2.14 16 23 O -0.38 -10.87 9.97 -148.98 -1.49 -12.36 16 24 N -0.44 -6.87 2.62 -502.01 -1.31 -8.19 16 25 C -0.02 -0.27 10.45 83.21 0.87 0.60 16 26 C -0.22 -3.74 10.86 22.14 0.24 -3.50 16 27 C -0.22 -3.82 10.86 22.14 0.24 -3.58 16 28 C -0.03 -0.46 11.39 83.21 0.95 0.49 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.08 1.53 5.95 -2.39 -0.01 1.51 16 31 H 0.07 0.88 7.91 -2.39 -0.02 0.86 16 32 H 0.12 1.02 8.06 -2.39 -0.02 1.00 16 33 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.41 6.20 7.20 -92.71 -0.67 5.53 16 35 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.08 1.56 6.87 -2.39 -0.02 1.54 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.05 1.67 6.12 -2.39 -0.01 1.66 16 40 H 0.07 2.58 7.96 -2.39 -0.02 2.56 16 41 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 43 H 0.03 1.28 6.86 -2.39 -0.02 1.26 16 44 H 0.06 2.75 4.60 -2.39 -0.01 2.74 16 45 H 0.06 1.81 6.25 -2.39 -0.01 1.80 16 46 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 47 H 0.18 1.77 8.06 -2.91 -0.02 1.74 16 48 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 49 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 50 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -68.90 386.97 2.73 -66.17 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.16 Total: 21.17 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 7.47 Total: 3.30 kcal Atomic # 7 Polarization: -105.38 SS G_CDS: -5.04 Total: -110.42 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -1.53 Total: -27.23 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.67 Total: 47.02 kcal Total: -68.90 2.73 -66.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108352622.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.452 kcal (2) G-P(sol) polarization free energy of solvation -68.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds