Wall clock time and date at job start Tue Mar 31 2020 18:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50707 * 120.00056 * 2 1 4 4 C 1.50695 * 120.00348 * 180.02562 * 2 1 3 5 5 C 1.53002 * 109.47004 * 264.61548 * 4 2 1 6 6 H 1.08998 * 109.46823 * 305.75853 * 5 4 2 7 7 C 1.52996 * 109.47584 * 65.76017 * 5 4 2 8 8 C 1.50700 * 109.47149 * 185.76280 * 5 4 2 9 9 O 1.21290 * 119.99935 * 359.97438 * 8 5 4 10 10 N 1.34772 * 120.00251 * 179.97438 * 8 5 4 11 11 C 1.46506 * 120.00173 * 179.97438 * 10 8 5 12 12 H 1.09005 * 110.85203 * 31.21457 * 11 10 8 13 13 C 1.54621 * 111.00400 * 267.39795 * 11 10 8 14 14 C 1.51280 * 104.19713 * 266.66578 * 13 11 10 15 15 O 1.21281 * 124.94442 * 164.01350 * 14 13 11 16 16 N 1.34417 * 110.11542 * 343.74519 * 14 13 11 17 17 C 1.46498 * 124.35107 * 179.61366 * 16 14 13 18 18 C 1.53939 * 113.74038 * 38.72018 * 17 16 14 19 19 N 1.47818 * 86.03568 * 222.08296 * 18 17 16 20 20 C 1.36933 * 134.45796 * 204.64313 * 19 18 17 21 21 H 1.08002 * 120.00424 * 174.53254 * 20 19 18 22 22 C 1.38817 * 119.99939 * 354.53534 * 20 19 18 23 23 N 1.31621 * 119.99895 * 5.01077 * 22 20 19 24 24 Si 1.86805 * 119.99946 * 185.01385 * 22 20 19 25 25 H 1.48500 * 109.47233 * 94.99460 * 24 22 20 26 26 H 1.48500 * 109.47057 * 214.99408 * 24 22 20 27 27 H 1.48504 * 109.46901 * 334.99438 * 24 22 20 28 28 C 1.47580 * 91.05039 * 24.54871 * 19 18 17 29 29 C 1.46769 * 111.29890 * 359.59401 * 16 14 13 30 30 H 1.08007 * 120.00242 * 359.97438 * 1 2 3 31 31 H 1.08004 * 120.00164 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47396 * 245.00672 * 3 2 1 33 33 H 1.09008 * 109.46806 * 5.00939 * 3 2 1 34 34 H 1.09004 * 109.46944 * 125.00160 * 3 2 1 35 35 H 1.09003 * 109.47294 * 144.61266 * 4 2 1 36 36 H 1.09000 * 109.46846 * 24.61166 * 4 2 1 37 37 H 1.09005 * 109.46906 * 64.33122 * 7 5 4 38 38 H 1.08998 * 109.47475 * 184.33270 * 7 5 4 39 39 H 1.08995 * 109.46991 * 304.33562 * 7 5 4 40 40 H 0.96996 * 120.00017 * 359.97438 * 10 8 5 41 41 H 1.09003 * 110.48805 * 147.98503 * 13 11 10 42 42 H 1.09000 * 110.48511 * 25.34252 * 13 11 10 43 43 H 1.09004 * 112.94534 * 170.30823 * 17 16 14 44 44 H 1.09003 * 113.77239 * 336.34359 * 18 17 16 45 45 H 1.08997 * 113.77278 * 107.75016 * 18 17 16 46 46 H 0.97005 * 119.99416 * 180.02562 * 23 22 20 47 47 H 1.09003 * 113.76891 * 221.15382 * 28 19 18 48 48 H 1.08996 * 113.77079 * 89.75034 * 28 19 18 49 49 H 1.09003 * 110.24395 * 136.01388 * 29 16 14 50 50 H 1.08997 * 110.24740 * 258.01137 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3050 -0.0006 5 6 2.4357 -1.6796 1.4354 6 1 2.9763 -0.8537 1.8978 7 6 1.1627 -1.9666 2.2340 8 6 3.3091 -2.9076 1.4239 9 8 3.6044 -3.4320 0.3708 10 7 3.7622 -3.4233 2.5837 11 6 4.6108 -4.6175 2.5725 12 1 5.2182 -4.6535 1.6681 13 6 3.7624 -5.9017 2.7209 14 6 3.7624 -6.1765 4.2085 15 8 2.9957 -6.9252 4.7766 16 7 4.7394 -5.4747 4.8083 17 6 5.0130 -5.5022 6.2473 18 6 4.8576 -6.8964 6.8812 19 7 4.1878 -6.2002 7.9999 20 6 3.9946 -6.4810 9.3262 21 1 3.5325 -5.7487 9.9715 22 6 4.3928 -7.7071 9.8412 23 7 5.0442 -8.5605 9.0798 24 14 4.0041 -8.1457 11.6149 25 1 2.7458 -8.9328 11.6659 26 1 5.1155 -8.9521 12.1804 27 1 3.8419 -6.9010 12.4085 28 6 3.8130 -5.0805 7.1146 29 6 5.4971 -4.6778 3.8363 30 1 -0.5401 0.9353 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 2.6212 1.4028 -0.9314 33 1 1.3585 2.1317 0.0897 34 1 2.7557 1.3250 0.8418 35 1 2.9708 -1.2005 -0.5957 36 1 1.4361 -2.0866 -0.4289 37 1 0.6620 -2.8408 1.8177 38 1 1.4223 -2.1582 3.2752 39 1 0.4968 -1.1056 2.1781 40 1 3.5264 -3.0038 3.4259 41 1 4.2237 -6.7282 2.1803 42 1 2.7466 -5.7311 2.3645 43 1 5.9439 -5.0008 6.5125 44 1 4.2007 -7.5626 6.3219 45 1 5.8041 -7.3621 7.1558 46 1 5.3221 -9.4174 9.4396 47 1 3.9271 -4.0992 7.5751 48 1 2.8487 -5.2122 6.6239 49 1 5.6695 -3.6738 4.2243 50 1 6.4462 -5.1630 3.6087 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108566265.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:52 Heat of formation + Delta-G solvation = 2.400696 kcal Electronic energy + Delta-G solvation = -29345.517886 eV Core-core repulsion = 25375.001348 eV Total energy + Delta-G solvation = -3970.516538 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.88131 -39.82409 -37.47375 -37.02654 -36.30339 -34.08615 -33.08725 -32.09729 -30.30086 -27.69202 -27.58956 -27.37557 -27.07402 -24.75811 -24.14316 -23.37052 -21.56602 -20.59649 -20.19714 -18.76417 -18.30664 -17.36798 -17.04029 -16.70248 -16.29391 -15.72864 -15.30428 -15.15978 -14.90819 -14.63044 -14.51197 -14.09761 -13.91551 -13.71361 -13.60296 -13.43732 -13.35030 -12.97880 -12.70997 -12.56503 -12.38317 -12.04327 -11.94411 -11.80743 -11.71980 -11.60896 -11.43816 -11.36348 -11.32586 -11.24924 -10.84928 -10.71679 -10.22601 -9.98541 -9.97313 -9.61374 -9.50258 -9.36668 -9.16276 -8.66420 -8.19445 -6.81920 -5.74670 -3.05826 1.84821 2.36317 2.83651 2.95568 3.24542 3.41593 3.47135 3.48350 4.19784 4.31232 4.41324 4.47582 4.50566 4.53621 4.69320 4.76264 4.78566 5.00288 5.03463 5.15305 5.22156 5.27507 5.35060 5.40284 5.42306 5.44764 5.47910 5.52727 5.57884 5.59219 5.63386 5.65673 5.69235 5.81362 5.82849 5.86128 6.19614 6.25940 6.29318 6.49273 6.52689 6.56791 6.86402 7.19777 7.26722 7.48973 7.57592 7.63138 7.94083 7.99643 8.56272 9.06822 9.73298 10.62724 11.42995 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021084 B = 0.002257 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.707663 B =12403.265935 C =13051.580483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.067 4.067 5 C -0.104 4.104 6 H 0.098 0.902 7 C -0.149 4.149 8 C 0.521 3.479 9 O -0.538 6.538 10 N -0.720 5.720 11 C 0.133 3.867 12 H 0.117 0.883 13 C -0.167 4.167 14 C 0.512 3.488 15 O -0.509 6.509 16 N -0.609 5.609 17 C 0.098 3.902 18 C 0.155 3.845 19 N -0.605 5.605 20 C -0.222 4.222 21 H 0.081 0.919 22 C -0.007 4.007 23 N -0.917 5.917 24 Si 0.911 3.089 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.280 1.280 28 C 0.112 3.888 29 C 0.095 3.905 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.404 0.596 41 H 0.111 0.889 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.058 0.942 45 H 0.067 0.933 46 H 0.254 0.746 47 H 0.041 0.959 48 H 0.039 0.961 49 H 0.083 0.917 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.911 18.795 -19.907 27.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.125 4.125 3 C -0.177 4.177 4 C -0.105 4.105 5 C -0.125 4.125 6 H 0.116 0.884 7 C -0.207 4.207 8 C 0.308 3.692 9 O -0.415 6.415 10 N -0.372 5.372 11 C 0.027 3.973 12 H 0.134 0.866 13 C -0.208 4.208 14 C 0.298 3.702 15 O -0.384 6.384 16 N -0.345 5.345 17 C -0.005 4.005 18 C 0.029 3.971 19 N -0.331 5.331 20 C -0.350 4.350 21 H 0.098 0.902 22 C -0.204 4.204 23 N -0.563 5.563 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.206 1.206 28 C -0.015 4.015 29 C -0.030 4.030 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.239 0.761 41 H 0.129 0.871 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.076 0.924 45 H 0.085 0.915 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.056 0.944 49 H 0.101 0.899 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.053 17.806 -19.962 26.828 hybrid contribution -0.366 -0.138 1.405 1.459 sum -2.420 17.668 -18.556 25.736 Atomic orbital electron populations 1.23774 0.95207 1.01905 1.02201 1.21729 0.95430 0.95581 0.99733 1.20889 1.00281 0.94319 1.02224 1.20463 1.00903 0.94388 0.94701 1.21239 0.96860 0.95923 0.98502 0.88351 1.21876 0.96254 1.03003 0.99558 1.20677 0.79789 0.85273 0.83467 1.90709 1.57936 1.61968 1.30837 1.46047 1.52190 1.29575 1.09373 1.21857 0.91723 0.84240 0.99471 0.86551 1.22826 1.03334 0.99004 0.95685 1.20690 0.80480 0.79982 0.89030 1.90792 1.41115 1.36065 1.70399 1.48539 1.32743 1.45485 1.07711 1.24071 0.98986 1.02675 0.74729 1.22751 0.97945 0.90856 0.85570 1.45688 1.63353 1.20144 1.03939 1.18974 1.34844 0.99101 0.82080 0.90171 1.24837 1.00929 0.96259 0.98348 1.69846 1.42198 1.08960 1.35295 0.86114 0.77617 0.78136 0.83982 1.21593 1.21704 1.20551 1.22907 0.95407 0.92758 0.90453 1.22351 0.95226 0.97172 0.88228 0.88535 0.88378 0.91519 0.92041 0.91610 0.90317 0.90575 0.92004 0.91912 0.90794 0.76061 0.87134 0.88198 0.87720 0.92448 0.91485 0.93621 0.94101 0.94374 0.89898 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.23 12.44 29.02 0.36 -0.87 16 2 C -0.12 -0.82 4.80 -101.06 -0.49 -1.30 16 3 C -0.12 -0.64 10.12 36.01 0.36 -0.28 16 4 C -0.07 -0.51 4.22 -27.88 -0.12 -0.63 16 5 C -0.10 -0.74 2.71 -91.77 -0.25 -0.99 16 6 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 7 C -0.15 -1.02 8.83 37.16 0.33 -0.69 16 8 C 0.52 4.93 7.15 -10.99 -0.08 4.85 16 9 O -0.54 -6.90 15.54 5.55 0.09 -6.81 16 10 N -0.72 -6.07 5.03 -52.22 -0.26 -6.33 16 11 C 0.13 1.22 3.53 -66.30 -0.23 0.99 16 12 H 0.12 1.02 7.54 -51.93 -0.39 0.63 16 13 C -0.17 -1.97 6.59 -26.75 -0.18 -2.14 16 14 C 0.51 8.46 7.42 -10.86 -0.08 8.38 16 15 O -0.51 -11.26 14.61 5.56 0.08 -11.18 16 16 N -0.61 -8.95 3.16 -166.64 -0.53 -9.47 16 17 C 0.10 1.81 4.81 -70.15 -0.34 1.47 16 18 C 0.15 3.83 6.84 -2.84 -0.02 3.81 16 19 N -0.60 -16.16 3.70 -177.89 -0.66 -16.82 16 20 C -0.22 -6.44 10.70 -15.06 -0.16 -6.60 16 21 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 22 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 23 N -0.92 -28.10 11.48 55.49 0.64 -27.47 16 24 Si 0.91 22.67 29.56 -169.99 -5.02 17.64 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 C 0.11 2.37 8.44 -2.97 -0.03 2.34 16 29 C 0.09 0.90 6.97 -3.12 -0.02 0.88 16 30 H 0.10 0.53 7.84 -52.48 -0.41 0.12 16 31 H 0.10 0.62 7.99 -52.48 -0.42 0.20 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.29 7.79 -51.92 -0.40 -0.11 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.66 7.93 -51.93 -0.41 0.24 16 36 H 0.08 0.66 7.98 -51.93 -0.41 0.24 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.41 7.69 -51.93 -0.40 0.01 16 39 H 0.07 0.46 6.30 -51.93 -0.33 0.14 16 40 H 0.40 2.93 8.16 -40.82 -0.33 2.60 16 41 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.10 1.22 8.09 -51.93 -0.42 0.80 16 43 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 44 H 0.06 1.58 5.71 -51.93 -0.30 1.29 16 45 H 0.07 1.80 7.31 -51.93 -0.38 1.42 16 46 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.04 0.86 7.26 -51.93 -0.38 0.48 16 49 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 50 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 402.41 15.07 6.06 6.06 Total: -1.00 -36.46 402.41 -8.96 -45.42 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -8.33 Total: 0.03 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: -1.03 Total: 8.93 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: -0.81 Total: -60.09 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: 0.17 Total: -17.99 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.46 -8.96 -45.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108566265.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.823 kcal (2) G-P(sol) polarization free energy of solvation -36.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds