Wall clock time and date at job start Tue Mar 31 2020 18:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 120.00164 * 2 1 4 4 C 1.50700 * 119.99903 * 180.27143 * 2 1 3 5 5 C 1.52999 * 109.47023 * 95.00017 * 4 2 1 6 6 H 1.08995 * 109.47240 * 55.00158 * 5 4 2 7 7 C 1.53004 * 109.46977 * 294.99867 * 5 4 2 8 8 C 1.50697 * 109.46999 * 175.00190 * 5 4 2 9 9 O 1.21280 * 120.00098 * 359.97438 * 8 5 4 10 10 N 1.34785 * 119.99917 * 180.02562 * 8 5 4 11 11 C 1.46496 * 119.99693 * 180.02562 * 10 8 5 12 12 H 1.08994 * 110.86129 * 322.65718 * 11 10 8 13 13 C 1.54634 * 110.97312 * 86.45325 * 11 10 8 14 14 C 1.51282 * 104.19582 * 142.91251 * 13 11 10 15 15 O 1.21280 * 124.93807 * 163.71150 * 14 13 11 16 16 N 1.34417 * 110.11533 * 343.74782 * 14 13 11 17 17 C 1.46505 * 124.34527 * 179.57065 * 16 14 13 18 18 C 1.53948 * 113.74267 * 38.71743 * 17 16 14 19 19 N 1.47808 * 86.03494 * 222.08117 * 18 17 16 20 20 C 1.36932 * 134.45442 * 204.63923 * 19 18 17 21 21 H 1.07999 * 120.00228 * 179.86621 * 20 19 18 22 22 C 1.38814 * 120.00172 * 359.87443 * 20 19 18 23 23 N 1.31621 * 119.99836 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00037 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47508 * 59.99553 * 24 22 20 26 26 H 1.48500 * 109.47037 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47210 * 299.99778 * 24 22 20 28 28 C 1.47580 * 91.05181 * 24.54805 * 19 18 17 29 29 C 1.46759 * 111.30497 * 359.59143 * 16 14 13 30 30 H 1.08000 * 119.99390 * 359.72719 * 1 2 3 31 31 H 1.07999 * 120.00108 * 179.72930 * 1 2 3 32 32 H 1.09001 * 109.47102 * 359.97438 * 3 2 1 33 33 H 1.08990 * 109.47277 * 119.99821 * 3 2 1 34 34 H 1.09002 * 109.46506 * 240.00100 * 3 2 1 35 35 H 1.08999 * 109.47536 * 215.00018 * 4 2 1 36 36 H 1.09006 * 109.47107 * 334.99965 * 4 2 1 37 37 H 1.08995 * 109.47373 * 300.00209 * 7 5 4 38 38 H 1.09004 * 109.46987 * 60.00680 * 7 5 4 39 39 H 1.09007 * 109.46892 * 179.97438 * 7 5 4 40 40 H 0.96996 * 119.99814 * 359.97438 * 10 8 5 41 41 H 1.09005 * 110.48279 * 261.59179 * 13 11 10 42 42 H 1.08999 * 110.48538 * 24.10259 * 13 11 10 43 43 H 1.08998 * 112.94313 * 170.30248 * 17 16 14 44 44 H 1.08999 * 113.76724 * 336.34890 * 18 17 16 45 45 H 1.08999 * 113.76790 * 107.74201 * 18 17 16 46 46 H 0.96998 * 119.99428 * 180.02562 * 23 22 20 47 47 H 1.08997 * 113.76945 * 221.14691 * 28 19 18 48 48 H 1.09004 * 113.76910 * 89.75304 * 28 19 18 49 49 H 1.08995 * 110.24896 * 258.01806 * 29 16 14 50 50 H 1.08996 * 110.24830 * 136.01347 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0062 5 6 2.4274 -1.6771 -1.4450 6 1 2.9770 -0.8558 -1.9047 7 6 1.1487 -1.9442 -2.2416 8 6 3.2852 -2.9161 -1.4418 9 8 3.5773 -3.4488 -0.3922 10 7 3.7288 -3.4315 -2.6055 11 6 4.5623 -4.6363 -2.6025 12 1 5.2484 -4.6314 -1.7556 13 6 3.6897 -5.9129 -2.6004 14 6 4.4469 -6.8812 -3.4823 15 8 4.2569 -8.0784 -3.5225 16 7 5.3613 -6.2218 -4.2143 17 6 6.2731 -6.8593 -5.1675 18 6 5.6268 -7.9985 -5.9764 19 7 6.8888 -8.7349 -5.7533 20 6 7.5389 -9.7449 -6.4106 21 1 8.4795 -10.1176 -6.0327 22 6 6.9891 -10.2898 -7.5629 23 7 5.8427 -9.8359 -8.0234 24 14 7.8763 -11.6673 -8.4601 25 1 8.0306 -12.8313 -7.5511 26 1 7.0869 -12.0712 -9.6512 27 1 9.2166 -11.1947 -8.8909 28 6 7.1678 -7.9431 -4.5395 29 6 5.3293 -4.7812 -3.9356 30 1 -0.5399 0.9354 0.0045 31 1 -0.5400 -0.9353 -0.0044 32 1 1.3553 2.1336 -0.0005 33 1 2.6902 1.3629 0.8899 34 1 2.6902 1.3627 -0.8900 35 1 2.9742 -1.2017 0.5837 36 1 1.4385 -2.0875 0.4245 37 1 0.5990 -2.7655 -1.7819 38 1 0.5282 -1.0479 -2.2439 39 1 1.4079 -2.2087 -3.2668 40 1 3.4955 -3.0052 -3.4450 41 1 3.5971 -6.3100 -1.5895 42 1 2.7053 -5.7028 -3.0185 43 1 6.8180 -6.1408 -5.7798 44 1 4.7629 -8.4491 -5.4877 45 1 5.4427 -7.7463 -7.0207 46 1 5.4584 -10.2169 -8.8283 47 1 8.2119 -7.6468 -4.4386 48 1 6.7576 -8.3774 -3.6277 49 1 4.8040 -4.2544 -4.7322 50 1 6.3431 -4.3946 -3.8314 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108566268.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:01 Heat of formation + Delta-G solvation = 4.040870 kcal Electronic energy + Delta-G solvation = -28912.770914 eV Core-core repulsion = 24942.325500 eV Total energy + Delta-G solvation = -3970.445414 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.84496 -39.89443 -37.48943 -37.04941 -36.32442 -34.24191 -33.15964 -32.09539 -30.23964 -27.73654 -27.60936 -27.42808 -27.04638 -24.72665 -24.15728 -23.31021 -21.65863 -20.67860 -20.18907 -18.81668 -18.31144 -17.44371 -16.95086 -16.68392 -16.24689 -15.76668 -15.54401 -15.17284 -14.79305 -14.71734 -14.49958 -14.05225 -13.91506 -13.75610 -13.61156 -13.50650 -13.45363 -13.23522 -12.84977 -12.47290 -12.41830 -12.10787 -12.01224 -11.82762 -11.70452 -11.57753 -11.40822 -11.37794 -11.31003 -11.14631 -10.82457 -10.70870 -10.22406 -10.06619 -9.98055 -9.67078 -9.47907 -9.41701 -9.15095 -8.65356 -8.18619 -6.80747 -5.71359 -3.03179 1.79597 2.31966 2.71511 2.93129 3.30511 3.43448 3.47827 3.49158 4.12917 4.28459 4.39990 4.44609 4.49954 4.52370 4.63574 4.72215 4.80823 4.88069 4.95596 5.09809 5.21894 5.24423 5.34080 5.34784 5.35501 5.37112 5.42361 5.54148 5.54655 5.55962 5.66230 5.67104 5.70593 5.73826 5.78462 5.85775 6.13765 6.24303 6.30003 6.47689 6.52953 6.59164 6.88002 7.13202 7.29444 7.49065 7.58893 7.63599 7.89723 8.02096 8.55562 9.09401 9.75571 10.64758 11.45934 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.038122 B = 0.001892 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.315249 B =14793.891858 C =14868.356108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.124 4.124 3 C -0.121 4.121 4 C -0.068 4.068 5 C -0.103 4.103 6 H 0.099 0.901 7 C -0.148 4.148 8 C 0.520 3.480 9 O -0.533 6.533 10 N -0.720 5.720 11 C 0.135 3.865 12 H 0.110 0.890 13 C -0.166 4.166 14 C 0.515 3.485 15 O -0.507 6.507 16 N -0.606 5.606 17 C 0.098 3.902 18 C 0.153 3.847 19 N -0.605 5.605 20 C -0.220 4.220 21 H 0.080 0.920 22 C -0.008 4.008 23 N -0.920 5.920 24 Si 0.914 3.086 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.111 3.889 29 C 0.099 3.901 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.403 0.597 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.056 0.944 45 H 0.070 0.930 46 H 0.254 0.746 47 H 0.043 0.957 48 H 0.040 0.960 49 H 0.073 0.927 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.238 26.032 12.981 30.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.124 4.124 3 C -0.177 4.177 4 C -0.106 4.106 5 C -0.125 4.125 6 H 0.117 0.883 7 C -0.206 4.206 8 C 0.306 3.694 9 O -0.409 6.409 10 N -0.373 5.373 11 C 0.029 3.971 12 H 0.128 0.872 13 C -0.208 4.208 14 C 0.301 3.699 15 O -0.381 6.381 16 N -0.341 5.341 17 C -0.004 4.004 18 C 0.027 3.973 19 N -0.331 5.331 20 C -0.348 4.348 21 H 0.098 0.902 22 C -0.205 4.205 23 N -0.567 5.567 24 Si 0.744 3.256 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.211 1.211 28 C -0.016 4.016 29 C -0.025 4.025 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.238 0.762 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.074 0.926 45 H 0.088 0.912 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.058 0.942 49 H 0.091 0.909 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.018 24.703 13.389 29.510 hybrid contribution 0.269 -0.541 -0.934 1.112 sum -8.749 24.162 12.455 28.557 Atomic orbital electron populations 1.23773 0.95197 1.01894 1.02254 1.21728 0.95418 0.95564 0.99695 1.20890 1.00290 0.94309 1.02259 1.20477 1.01005 0.94437 0.94657 1.21239 0.96927 0.95758 0.98550 0.88306 1.21873 0.96185 1.03087 0.99420 1.20681 0.79779 0.85465 0.83450 1.90732 1.57273 1.61719 1.31174 1.45971 1.53121 1.28849 1.09330 1.21798 0.92416 0.83884 0.98985 0.87227 1.22820 1.00278 0.95393 1.02307 1.20604 0.80242 0.88291 0.80748 1.90792 1.66955 1.14027 1.66362 1.48498 1.37098 1.06418 1.42118 1.24083 0.91932 0.93894 0.90516 1.22783 0.90464 0.85977 0.98031 1.45696 1.21834 1.41214 1.24359 1.18945 1.02138 1.09606 1.04130 0.90236 1.24800 0.97182 1.00006 0.98489 1.69820 1.18585 1.44299 1.24002 0.86172 0.78502 0.81870 0.79039 1.21176 1.21564 1.21091 1.22924 0.96496 0.90166 0.91994 1.22188 1.01376 0.83606 0.95374 0.88545 0.88388 0.92048 0.91517 0.91577 0.90295 0.90508 0.91931 0.90872 0.92010 0.76170 0.87895 0.87885 0.87644 0.92620 0.91169 0.93623 0.93932 0.94212 0.90919 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.07 12.51 29.01 0.36 -0.70 16 2 C -0.12 -0.72 4.79 -101.07 -0.48 -1.20 16 3 C -0.12 -0.56 10.12 36.01 0.36 -0.20 16 4 C -0.07 -0.47 4.22 -27.88 -0.12 -0.59 16 5 C -0.10 -0.61 2.71 -91.77 -0.25 -0.86 16 6 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 7 C -0.15 -0.73 8.72 37.16 0.32 -0.41 16 8 C 0.52 4.51 7.15 -10.98 -0.08 4.43 16 9 O -0.53 -6.82 15.66 5.56 0.09 -6.74 16 10 N -0.72 -5.10 5.08 -52.22 -0.27 -5.37 16 11 C 0.13 1.28 3.43 -66.29 -0.23 1.05 16 12 H 0.11 1.15 7.72 -51.93 -0.40 0.74 16 13 C -0.17 -2.02 6.59 -26.74 -0.18 -2.20 16 14 C 0.52 8.81 7.42 -10.86 -0.08 8.73 16 15 O -0.51 -11.44 14.61 5.56 0.08 -11.36 16 16 N -0.61 -9.29 3.15 -166.65 -0.53 -9.81 16 17 C 0.10 1.87 4.81 -70.15 -0.34 1.54 16 18 C 0.15 3.84 6.90 -2.84 -0.02 3.82 16 19 N -0.60 -16.42 3.70 -177.90 -0.66 -17.08 16 20 C -0.22 -6.46 10.70 -15.06 -0.16 -6.62 16 21 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 22 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 23 N -0.92 -28.25 11.39 55.49 0.63 -27.62 16 24 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 28 C 0.11 2.45 8.44 -2.97 -0.03 2.43 16 29 C 0.10 0.97 7.07 -3.12 -0.02 0.94 16 30 H 0.10 0.45 7.83 -52.49 -0.41 0.04 16 31 H 0.10 0.53 7.99 -52.49 -0.42 0.11 16 32 H 0.06 0.25 7.78 -51.93 -0.40 -0.16 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.08 0.62 7.95 -51.93 -0.41 0.21 16 36 H 0.08 0.62 7.99 -51.93 -0.41 0.20 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.33 6.52 -51.93 -0.34 -0.01 16 39 H 0.06 0.24 7.57 -51.93 -0.39 -0.15 16 40 H 0.40 1.77 7.78 -40.82 -0.32 1.45 16 41 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.10 1.13 8.08 -51.93 -0.42 0.71 16 43 H 0.11 1.80 8.14 -51.93 -0.42 1.38 16 44 H 0.06 1.54 5.72 -51.93 -0.30 1.25 16 45 H 0.07 1.89 7.17 -51.93 -0.37 1.52 16 46 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 48 H 0.04 0.94 7.25 -51.93 -0.38 0.56 16 49 H 0.07 0.57 7.77 -51.93 -0.40 0.16 16 50 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 401.95 15.07 6.06 6.06 Total: -1.00 -37.05 401.95 -8.95 -46.00 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -8.31 Total: -1.67 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: -1.02 Total: 9.81 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: -0.82 Total: -59.88 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.17 Total: -18.10 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -37.05 -8.95 -46.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108566268.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.043 kcal (2) G-P(sol) polarization free energy of solvation -37.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds