Wall clock time and date at job start Tue Mar 31 2020 18:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 120.00164 * 2 1 4 4 C 1.50700 * 119.99903 * 180.27143 * 2 1 3 5 5 C 1.52999 * 109.47023 * 95.00017 * 4 2 1 6 6 H 1.08995 * 109.47240 * 55.00158 * 5 4 2 7 7 C 1.53004 * 109.46977 * 294.99867 * 5 4 2 8 8 C 1.50697 * 109.46999 * 175.00190 * 5 4 2 9 9 O 1.21280 * 120.00098 * 359.97438 * 8 5 4 10 10 N 1.34785 * 119.99917 * 180.02562 * 8 5 4 11 11 C 1.46496 * 119.99693 * 180.02562 * 10 8 5 12 12 H 1.08994 * 110.86129 * 322.65718 * 11 10 8 13 13 C 1.54634 * 110.97312 * 86.45325 * 11 10 8 14 14 C 1.51282 * 104.19582 * 142.91251 * 13 11 10 15 15 O 1.21280 * 124.93807 * 163.71150 * 14 13 11 16 16 N 1.34417 * 110.11533 * 343.74782 * 14 13 11 17 17 C 1.46505 * 124.34527 * 179.57065 * 16 14 13 18 18 C 1.53948 * 113.74267 * 38.71743 * 17 16 14 19 19 N 1.47808 * 86.03494 * 222.08117 * 18 17 16 20 20 C 1.36932 * 134.45442 * 204.63923 * 19 18 17 21 21 H 1.07999 * 120.00228 * 179.86621 * 20 19 18 22 22 C 1.38814 * 120.00172 * 359.87443 * 20 19 18 23 23 N 1.31621 * 119.99836 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00037 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47508 * 59.99553 * 24 22 20 26 26 H 1.48500 * 109.47037 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47210 * 299.99778 * 24 22 20 28 28 C 1.47580 * 91.05181 * 24.54805 * 19 18 17 29 29 C 1.46759 * 111.30497 * 359.59143 * 16 14 13 30 30 H 1.08000 * 119.99390 * 359.72719 * 1 2 3 31 31 H 1.07999 * 120.00108 * 179.72930 * 1 2 3 32 32 H 1.09001 * 109.47102 * 359.97438 * 3 2 1 33 33 H 1.08990 * 109.47277 * 119.99821 * 3 2 1 34 34 H 1.09002 * 109.46506 * 240.00100 * 3 2 1 35 35 H 1.08999 * 109.47536 * 215.00018 * 4 2 1 36 36 H 1.09006 * 109.47107 * 334.99965 * 4 2 1 37 37 H 1.08995 * 109.47373 * 300.00209 * 7 5 4 38 38 H 1.09004 * 109.46987 * 60.00680 * 7 5 4 39 39 H 1.09007 * 109.46892 * 179.97438 * 7 5 4 40 40 H 0.96996 * 119.99814 * 359.97438 * 10 8 5 41 41 H 1.09005 * 110.48279 * 261.59179 * 13 11 10 42 42 H 1.08999 * 110.48538 * 24.10259 * 13 11 10 43 43 H 1.08998 * 112.94313 * 170.30248 * 17 16 14 44 44 H 1.08999 * 113.76724 * 336.34890 * 18 17 16 45 45 H 1.08999 * 113.76790 * 107.74201 * 18 17 16 46 46 H 0.96998 * 119.99428 * 180.02562 * 23 22 20 47 47 H 1.08997 * 113.76945 * 221.14691 * 28 19 18 48 48 H 1.09004 * 113.76910 * 89.75304 * 28 19 18 49 49 H 1.08995 * 110.24896 * 258.01806 * 29 16 14 50 50 H 1.08996 * 110.24830 * 136.01347 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0062 5 6 2.4274 -1.6771 -1.4450 6 1 2.9770 -0.8558 -1.9047 7 6 1.1487 -1.9442 -2.2416 8 6 3.2852 -2.9161 -1.4418 9 8 3.5773 -3.4488 -0.3922 10 7 3.7288 -3.4315 -2.6055 11 6 4.5623 -4.6363 -2.6025 12 1 5.2484 -4.6314 -1.7556 13 6 3.6897 -5.9129 -2.6004 14 6 4.4469 -6.8812 -3.4823 15 8 4.2569 -8.0784 -3.5225 16 7 5.3613 -6.2218 -4.2143 17 6 6.2731 -6.8593 -5.1675 18 6 5.6268 -7.9985 -5.9764 19 7 6.8888 -8.7349 -5.7533 20 6 7.5389 -9.7449 -6.4106 21 1 8.4795 -10.1176 -6.0327 22 6 6.9891 -10.2898 -7.5629 23 7 5.8427 -9.8359 -8.0234 24 14 7.8763 -11.6673 -8.4601 25 1 8.0306 -12.8313 -7.5511 26 1 7.0869 -12.0712 -9.6512 27 1 9.2166 -11.1947 -8.8909 28 6 7.1678 -7.9431 -4.5395 29 6 5.3293 -4.7812 -3.9356 30 1 -0.5399 0.9354 0.0045 31 1 -0.5400 -0.9353 -0.0044 32 1 1.3553 2.1336 -0.0005 33 1 2.6902 1.3629 0.8899 34 1 2.6902 1.3627 -0.8900 35 1 2.9742 -1.2017 0.5837 36 1 1.4385 -2.0875 0.4245 37 1 0.5990 -2.7655 -1.7819 38 1 0.5282 -1.0479 -2.2439 39 1 1.4079 -2.2087 -3.2668 40 1 3.4955 -3.0052 -3.4450 41 1 3.5971 -6.3100 -1.5895 42 1 2.7053 -5.7028 -3.0185 43 1 6.8180 -6.1408 -5.7798 44 1 4.7629 -8.4491 -5.4877 45 1 5.4427 -7.7463 -7.0207 46 1 5.4584 -10.2169 -8.8283 47 1 8.2119 -7.6468 -4.4386 48 1 6.7576 -8.3774 -3.6277 49 1 4.8040 -4.2544 -4.7322 50 1 6.3431 -4.3946 -3.8314 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108566268.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:00 Heat of formation + Delta-G solvation = -21.996277 kcal Electronic energy + Delta-G solvation = -28913.899969 eV Core-core repulsion = 24942.325500 eV Total energy + Delta-G solvation = -3971.574470 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.93826 -40.85471 -38.99782 -37.96114 -37.37146 -35.28853 -34.25928 -33.57452 -31.48816 -29.19375 -28.45817 -28.04331 -27.83256 -26.62547 -25.36925 -24.58445 -22.54640 -22.13060 -21.09734 -19.76432 -19.26836 -18.80422 -18.10236 -17.84561 -17.57331 -17.00333 -16.46827 -16.35716 -16.04857 -15.65215 -15.56698 -15.24407 -15.10235 -14.87792 -14.61432 -14.48327 -14.23011 -14.05256 -13.82433 -13.60874 -13.41662 -13.37102 -13.27542 -12.92995 -12.80031 -12.74820 -12.59178 -12.44152 -12.27576 -12.12990 -12.03536 -11.94610 -11.85537 -11.78871 -11.51848 -11.11268 -10.80122 -10.63219 -10.10077 -9.83830 -9.58760 -8.95271 -7.93227 -5.27900 1.36387 1.42645 1.47849 1.53740 1.55909 1.65367 1.85944 2.21265 2.48371 3.24679 3.31855 3.46091 3.48859 3.67345 3.77597 3.91187 3.95032 3.99560 4.02198 4.22419 4.23921 4.29993 4.49628 4.51523 4.56919 4.64053 4.71838 4.75607 4.82088 4.88132 4.88701 4.90998 4.93388 4.98363 5.00443 5.13111 5.19821 5.21267 5.21931 5.26560 5.36497 5.43989 5.46584 5.82350 5.83280 5.88615 6.05776 6.23492 6.55279 6.87632 7.20589 7.27137 7.56494 8.52049 9.23885 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.038122 B = 0.001892 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.315249 B =14793.891858 C =14868.356108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.128 4.128 3 C -0.121 4.121 4 C -0.067 4.067 5 C -0.095 4.095 6 H 0.125 0.875 7 C -0.146 4.146 8 C 0.520 3.480 9 O -0.578 6.578 10 N -0.703 5.703 11 C 0.150 3.850 12 H 0.104 0.896 13 C -0.154 4.154 14 C 0.503 3.497 15 O -0.574 6.574 16 N -0.604 5.604 17 C 0.137 3.863 18 C 0.149 3.851 19 N -0.635 5.635 20 C -0.240 4.240 21 H 0.085 0.915 22 C -0.069 4.069 23 N -0.954 5.954 24 Si 0.986 3.014 25 H -0.282 1.282 26 H -0.292 1.292 27 H -0.268 1.268 28 C 0.111 3.889 29 C 0.100 3.900 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.048 0.952 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.421 0.579 41 H 0.095 0.905 42 H 0.119 0.881 43 H 0.140 0.860 44 H 0.021 0.979 45 H 0.044 0.956 46 H 0.249 0.751 47 H 0.069 0.931 48 H 0.020 0.980 49 H 0.106 0.894 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.454 29.156 12.523 32.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.128 4.128 3 C -0.178 4.178 4 C -0.105 4.105 5 C -0.116 4.116 6 H 0.142 0.858 7 C -0.203 4.203 8 C 0.308 3.692 9 O -0.457 6.457 10 N -0.357 5.357 11 C 0.043 3.957 12 H 0.122 0.878 13 C -0.195 4.195 14 C 0.292 3.708 15 O -0.453 6.453 16 N -0.338 5.338 17 C 0.034 3.966 18 C 0.023 3.977 19 N -0.361 5.361 20 C -0.368 4.368 21 H 0.103 0.897 22 C -0.262 4.262 23 N -0.602 5.602 24 Si 0.813 3.187 25 H -0.208 1.208 26 H -0.218 1.218 27 H -0.193 1.193 28 C -0.015 4.015 29 C -0.022 4.022 30 H 0.125 0.875 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.260 0.740 41 H 0.113 0.887 42 H 0.137 0.863 43 H 0.158 0.842 44 H 0.039 0.961 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.087 0.913 48 H 0.038 0.962 49 H 0.124 0.876 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.225 27.925 12.939 31.857 hybrid contribution -0.031 -1.496 -0.691 1.648 sum -8.256 26.429 12.248 30.276 Atomic orbital electron populations 1.23870 0.95219 1.02270 1.01907 1.21741 0.95504 0.95467 1.00058 1.20915 1.00457 0.93747 1.02643 1.20417 1.00180 0.94668 0.95226 1.21234 0.97125 0.94999 0.98196 0.85751 1.21878 0.95500 1.02990 0.99962 1.21186 0.79310 0.85792 0.82944 1.90727 1.58950 1.63117 1.32899 1.45778 1.52224 1.27716 1.09939 1.21535 0.91806 0.83428 0.98882 0.87765 1.22741 1.00783 0.95407 1.00598 1.21465 0.80414 0.88023 0.80908 1.90759 1.68914 1.17211 1.68388 1.48448 1.35654 1.09033 1.40631 1.23396 0.90450 0.93098 0.89694 1.22587 0.89350 0.88691 0.97115 1.46137 1.22479 1.41428 1.26104 1.19405 1.02578 1.10355 1.04453 0.89717 1.25739 0.98157 1.02717 0.99549 1.70033 1.20239 1.45659 1.24289 0.85058 0.77795 0.78538 0.77341 1.20847 1.21810 1.19305 1.23013 0.98481 0.90326 0.89728 1.22540 1.03681 0.79800 0.96197 0.87521 0.88733 0.91337 0.91762 0.90568 0.91635 0.92340 0.93300 0.90124 0.90275 0.74014 0.88684 0.86343 0.84200 0.96143 0.93764 0.94193 0.91268 0.96183 0.87583 0.86852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.86 12.51 67.78 0.85 -1.01 16 2 C -0.13 -1.27 4.79 -16.49 -0.08 -1.35 16 3 C -0.12 -0.87 10.12 71.24 0.72 -0.15 16 4 C -0.07 -0.86 4.22 29.85 0.13 -0.74 16 5 C -0.09 -0.88 2.71 -11.54 -0.03 -0.92 16 6 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 7 C -0.15 -1.05 8.72 71.98 0.63 -0.42 16 8 C 0.52 7.87 7.15 87.65 0.63 8.50 16 9 O -0.58 -14.32 15.66 -3.03 -0.05 -14.37 16 10 N -0.70 -7.51 5.08 -437.52 -2.22 -9.73 16 11 C 0.15 2.41 3.43 46.05 0.16 2.57 16 12 H 0.10 1.92 7.72 -2.39 -0.02 1.90 16 13 C -0.15 -3.58 6.59 30.59 0.20 -3.38 16 14 C 0.50 17.31 7.42 87.90 0.65 17.96 16 15 O -0.57 -27.31 14.61 -3.03 -0.04 -27.36 16 16 N -0.60 -17.48 3.15 -799.74 -2.52 -20.00 16 17 C 0.14 5.06 4.81 46.75 0.22 5.29 16 18 C 0.15 7.69 6.90 86.44 0.60 8.29 16 19 N -0.63 -35.15 3.70 -716.75 -2.65 -37.81 16 20 C -0.24 -14.26 10.70 84.03 0.90 -13.36 16 21 H 0.09 4.78 7.83 -2.91 -0.02 4.76 16 22 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 23 N -0.95 -60.39 11.39 21.65 0.25 -60.14 16 24 Si 0.99 47.48 29.55 68.60 2.03 49.51 16 25 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 26 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 27 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 28 C 0.11 4.85 8.44 86.48 0.73 5.58 16 29 C 0.10 1.53 7.07 86.84 0.61 2.14 16 30 H 0.11 0.79 7.83 -2.91 -0.02 0.77 16 31 H 0.09 0.94 7.99 -2.91 -0.02 0.92 16 32 H 0.07 0.40 7.78 -2.39 -0.02 0.38 16 33 H 0.06 0.49 8.14 -2.39 -0.02 0.48 16 34 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.06 1.01 7.95 -2.39 -0.02 0.99 16 36 H 0.06 0.95 7.99 -2.38 -0.02 0.93 16 37 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.08 0.50 6.52 -2.38 -0.02 0.48 16 39 H 0.08 0.31 7.57 -2.38 -0.02 0.29 16 40 H 0.42 1.67 7.78 -92.71 -0.72 0.94 16 41 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 42 H 0.12 2.40 8.08 -2.39 -0.02 2.38 16 43 H 0.14 4.28 8.14 -2.39 -0.02 4.26 16 44 H 0.02 1.22 5.72 -2.39 -0.01 1.20 16 45 H 0.04 2.47 7.17 -2.39 -0.02 2.46 16 46 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 47 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 48 H 0.02 0.97 7.25 -2.38 -0.02 0.96 16 49 H 0.11 1.04 7.77 -2.39 -0.02 1.02 16 50 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -86.95 401.95 2.37 -84.58 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 0.21 Total: 9.96 kcal Atomic # 6 Polarization: 17.97 SS G_CDS: 7.38 Total: 25.35 kcal Atomic # 7 Polarization: -120.53 SS G_CDS: -7.15 Total: -127.68 kcal Atomic # 8 Polarization: -41.63 SS G_CDS: -0.09 Total: -41.72 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -86.95 2.37 -84.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108566268.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.583 kcal (2) G-P(sol) polarization free energy of solvation -86.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds