Wall clock time and date at job start Tue Mar 31 2020 19:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46937 * 2 1 4 4 C 1.52999 * 109.46735 * 119.99657 * 2 1 3 5 5 C 1.50699 * 109.47169 * 294.99872 * 4 2 1 6 6 O 1.21285 * 120.00112 * 0.02562 * 5 4 2 7 7 N 1.34778 * 120.00079 * 180.02562 * 5 4 2 8 8 C 1.46498 * 120.00042 * 180.02562 * 7 5 4 9 9 H 1.09007 * 110.85357 * 322.65657 * 8 7 5 10 10 C 1.54627 * 110.97473 * 86.44740 * 8 7 5 11 11 C 1.51276 * 104.19344 * 142.91593 * 10 8 7 12 12 O 1.21288 * 124.93960 * 163.71236 * 11 10 8 13 13 N 1.34421 * 110.12027 * 343.74740 * 11 10 8 14 14 C 1.46501 * 124.35143 * 179.57179 * 13 11 10 15 15 C 1.53945 * 113.74412 * 36.64966 * 14 13 11 16 16 N 1.47583 * 86.11821 * 222.05155 * 15 14 13 17 17 C 1.36935 * 134.48778 * 204.64631 * 16 15 14 18 18 H 1.08005 * 119.99889 * 179.97438 * 17 16 15 19 19 C 1.38813 * 120.00122 * 359.97438 * 17 16 15 20 20 N 1.31617 * 120.00227 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99826 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47248 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47440 * 119.99832 * 21 19 17 24 24 H 1.48500 * 109.47050 * 240.00124 * 21 19 17 25 25 C 1.47579 * 91.01534 * 24.64128 * 16 15 14 26 26 C 1.46767 * 111.29830 * 359.59558 * 13 11 10 27 27 C 1.52998 * 109.47057 * 239.99457 * 2 1 3 28 28 C 1.53000 * 117.49463 * 111.38102 * 27 2 1 29 29 C 1.52997 * 60.00347 * 107.48750 * 28 27 2 30 30 H 1.09003 * 109.47441 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47749 * 300.00643 * 1 2 3 32 32 H 1.09002 * 109.47268 * 60.00795 * 1 2 3 33 33 H 1.08996 * 109.47464 * 55.00139 * 4 2 1 34 34 H 1.09009 * 109.46832 * 175.00144 * 4 2 1 35 35 H 0.96993 * 120.00080 * 359.97438 * 7 5 4 36 36 H 1.08995 * 110.48817 * 261.59698 * 10 8 7 37 37 H 1.08998 * 110.48233 * 24.10881 * 10 8 7 38 38 H 1.09002 * 112.94681 * 168.38965 * 14 13 11 39 39 H 1.09001 * 113.76699 * 336.35345 * 15 14 13 40 40 H 1.08997 * 113.76997 * 107.74192 * 15 14 13 41 41 H 0.97000 * 119.99787 * 180.02562 * 20 19 17 42 42 H 1.09002 * 113.76480 * 221.06547 * 25 16 15 43 43 H 1.08993 * 113.76845 * 89.66607 * 25 16 15 44 44 H 1.08995 * 110.23813 * 258.01188 * 26 13 11 45 45 H 1.09002 * 110.24278 * 136.01378 * 26 13 11 46 46 H 1.08990 * 115.56470 * 325.69153 * 27 2 1 47 47 H 1.09002 * 117.49696 * 214.97963 * 28 27 2 48 48 H 1.09002 * 117.50343 * 359.97438 * 28 27 2 49 49 H 1.08999 * 117.49685 * 252.51237 * 29 28 27 50 50 H 1.08997 * 117.50044 * 107.48590 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0572 2.4766 6 8 1.0108 1.0871 2.3632 7 7 1.9851 -0.3912 3.7002 8 6 1.5971 0.3652 4.8932 9 1 1.6595 1.4380 4.7100 10 6 0.1796 -0.0339 5.3649 11 6 0.2671 0.0026 6.8747 12 8 -0.6853 0.0276 7.6253 13 7 1.5539 0.0039 7.2634 14 6 1.9956 0.0444 8.6597 15 6 1.0974 -0.7592 9.6175 16 7 1.2419 0.3782 10.5467 17 6 1.1525 0.5248 11.9052 18 1 1.3060 1.4947 12.3550 19 6 0.8647 -0.5732 12.7044 20 7 0.6782 -1.7552 12.1564 21 14 0.7421 -0.3730 14.5576 22 1 0.9924 1.0453 14.9199 23 1 -0.6164 -0.7674 15.0093 24 1 1.7535 -1.2377 15.2168 25 6 1.5215 1.2940 9.4237 26 6 2.4594 -0.0397 6.1093 27 6 2.0400 -0.7214 -1.2492 28 6 2.7419 0.1225 -2.3150 29 6 3.5550 -0.8281 -1.4342 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5137 -0.8901 33 1 1.6053 -1.7197 1.2953 34 1 3.1263 -0.7994 1.2057 35 1 2.4889 -1.2150 3.7909 36 1 -0.5578 0.6850 5.0080 37 1 -0.0689 -1.0373 5.0193 38 1 3.0594 -0.1631 8.7750 39 1 0.0806 -0.9009 9.2512 40 1 1.5535 -1.6814 9.9775 41 1 0.4767 -2.5223 12.7148 42 1 2.3163 2.0111 9.6291 43 1 0.6293 1.7555 9.0007 44 1 2.8509 -1.0481 5.9751 45 1 3.2771 0.6683 6.2444 46 1 1.4310 -1.5584 -1.5905 47 1 2.5947 -0.1595 -3.3576 48 1 2.8400 1.1916 -2.1266 49 1 4.1883 -0.3845 -0.6659 50 1 3.9428 -1.7355 -1.8972 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108593770.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:58 Heat of formation + Delta-G solvation = 14.265384 kcal Electronic energy + Delta-G solvation = -28823.225478 eV Core-core repulsion = 24853.223432 eV Total energy + Delta-G solvation = -3970.002046 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.80975 -39.90115 -38.24096 -37.24043 -36.39681 -34.15003 -33.49607 -32.18202 -30.50884 -28.37325 -27.52537 -26.82191 -24.72180 -24.01077 -23.37450 -22.77848 -21.92207 -20.95679 -20.40898 -19.96752 -18.33222 -17.49589 -16.91942 -16.69350 -16.25810 -16.08238 -15.59290 -15.36229 -15.09495 -14.70789 -14.47222 -14.08544 -13.91507 -13.63170 -13.53530 -13.44630 -13.31786 -13.22936 -12.44634 -12.34810 -12.06168 -11.99606 -11.84619 -11.68488 -11.58633 -11.57249 -11.39968 -11.20291 -11.15121 -10.84976 -10.70169 -10.62275 -10.38471 -10.20150 -10.00548 -9.92124 -9.65286 -9.48663 -9.13998 -8.65026 -8.18540 -6.80540 -5.71811 -3.03674 2.34267 2.69538 2.93123 3.29338 3.38594 3.42640 3.48071 3.50202 4.13538 4.24188 4.38365 4.46234 4.49275 4.51953 4.57189 4.71348 4.81225 4.83736 4.89739 5.07818 5.12074 5.24065 5.24674 5.29401 5.34920 5.37284 5.44268 5.48428 5.54474 5.64832 5.65903 5.69802 5.71199 5.72426 5.79843 5.85967 6.00575 6.08576 6.22330 6.29981 6.52369 6.58837 6.87838 7.15267 7.30089 7.49391 7.59802 7.65378 7.93094 8.02162 8.55849 9.09382 9.75272 10.64470 11.45521 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.040022 B = 0.001849 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.455890 B =15142.193925 C =15309.961348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.044 4.044 3 H 0.079 0.921 4 C -0.136 4.136 5 C 0.515 3.485 6 O -0.531 6.531 7 N -0.723 5.723 8 C 0.135 3.865 9 H 0.109 0.891 10 C -0.166 4.166 11 C 0.515 3.485 12 O -0.507 6.507 13 N -0.606 5.606 14 C 0.098 3.902 15 C 0.151 3.849 16 N -0.605 5.605 17 C -0.219 4.219 18 H 0.081 0.919 19 C -0.009 4.009 20 N -0.919 5.919 21 Si 0.913 3.087 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.111 3.889 26 C 0.099 3.901 27 C -0.149 4.149 28 C -0.179 4.179 29 C -0.183 4.183 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.403 0.597 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.253 0.747 42 H 0.043 0.957 43 H 0.039 0.961 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.104 0.896 47 H 0.092 0.908 48 H 0.094 0.906 49 H 0.094 0.906 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.058 -0.450 -29.673 30.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.063 4.063 3 H 0.097 0.903 4 C -0.175 4.175 5 C 0.302 3.698 6 O -0.407 6.407 7 N -0.375 5.375 8 C 0.029 3.971 9 H 0.127 0.873 10 C -0.208 4.208 11 C 0.301 3.699 12 O -0.381 6.381 13 N -0.341 5.341 14 C -0.005 4.005 15 C 0.026 3.974 16 N -0.331 5.331 17 C -0.347 4.347 18 H 0.099 0.901 19 C -0.205 4.205 20 N -0.566 5.566 21 Si 0.744 3.256 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.217 1.217 25 C -0.016 4.016 26 C -0.026 4.026 27 C -0.167 4.167 28 C -0.216 4.216 29 C -0.220 4.220 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.238 0.762 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.091 0.909 45 H 0.103 0.897 46 H 0.123 0.877 47 H 0.111 0.889 48 H 0.113 0.887 49 H 0.113 0.887 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.067 0.215 -28.912 29.764 hybrid contribution 0.199 -0.460 0.980 1.101 sum 7.266 -0.245 -27.932 28.862 Atomic orbital electron populations 1.21930 0.94142 1.01574 1.03214 1.20457 0.96638 0.98803 0.90383 0.90310 1.21754 1.03077 1.00412 0.92305 1.20766 0.78889 0.85713 0.84456 1.90703 1.39062 1.24455 1.86509 1.46008 1.58353 1.27796 1.05375 1.21784 0.93385 0.97858 0.84031 0.87260 1.22815 0.98683 1.04880 0.94402 1.20617 0.83039 0.76225 0.90026 1.90788 1.39662 1.48634 1.59057 1.48496 1.06173 1.73166 1.06299 1.24092 0.99935 1.00608 0.75824 1.22787 0.97142 0.92890 0.84618 1.45669 1.82425 1.04797 1.00217 1.19041 1.41501 0.94902 0.79272 0.90121 1.24803 1.02016 0.95550 0.98142 1.69841 1.54103 0.98984 1.33711 0.86025 0.77313 0.77302 0.84992 1.20444 1.21730 1.21734 1.22933 0.97222 0.93222 0.88239 1.22191 0.93413 1.02041 0.84918 1.22411 0.94653 1.01990 0.97695 1.23008 1.04558 0.97737 0.96286 1.22965 0.93878 1.01821 1.03310 0.93236 0.90446 0.92793 0.88627 0.88736 0.76197 0.87894 0.87897 0.87662 0.92321 0.91197 0.93720 0.93918 0.94314 0.90922 0.89717 0.87743 0.88940 0.88735 0.88747 0.88852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.92 37.16 0.33 -0.83 16 2 C -0.04 -0.29 2.19 -90.62 -0.20 -0.49 16 3 H 0.08 0.64 7.71 -51.93 -0.40 0.24 16 4 C -0.14 -0.73 5.09 -27.88 -0.14 -0.87 16 5 C 0.51 4.23 7.55 -10.99 -0.08 4.15 16 6 O -0.53 -6.41 13.71 5.55 0.08 -6.34 16 7 N -0.72 -4.90 5.18 -52.22 -0.27 -5.17 16 8 C 0.14 1.26 3.43 -66.30 -0.23 1.03 16 9 H 0.11 1.13 7.72 -51.93 -0.40 0.73 16 10 C -0.17 -2.00 6.59 -26.75 -0.18 -2.18 16 11 C 0.51 8.78 7.44 -10.86 -0.08 8.70 16 12 O -0.51 -11.43 14.64 5.55 0.08 -11.35 16 13 N -0.61 -9.28 3.15 -166.63 -0.53 -9.80 16 14 C 0.10 1.87 4.82 -70.14 -0.34 1.53 16 15 C 0.15 3.80 6.88 -2.97 -0.02 3.78 16 16 N -0.60 -16.42 3.70 -178.07 -0.66 -17.07 16 17 C -0.22 -6.43 10.70 -15.06 -0.16 -6.59 16 18 H 0.08 2.27 7.83 -52.48 -0.41 1.86 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 20 N -0.92 -28.27 11.38 55.49 0.63 -27.63 16 21 Si 0.91 22.80 29.55 -169.99 -5.02 17.77 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 C 0.11 2.44 8.45 -2.97 -0.03 2.41 16 26 C 0.10 0.96 7.07 -3.12 -0.02 0.94 16 27 C -0.15 -0.81 5.15 -90.62 -0.47 -1.28 16 28 C -0.18 -0.96 10.18 -26.73 -0.27 -1.23 16 29 C -0.18 -0.87 9.67 -26.73 -0.26 -1.13 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.77 5.95 -51.93 -0.31 0.46 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 0.36 7.13 -51.92 -0.37 -0.01 16 35 H 0.40 1.61 8.37 -40.82 -0.34 1.27 16 36 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 38 H 0.11 1.80 8.14 -51.93 -0.42 1.38 16 39 H 0.06 1.63 5.58 -51.93 -0.29 1.34 16 40 H 0.07 1.89 7.15 -51.93 -0.37 1.52 16 41 H 0.25 7.47 8.31 -40.82 -0.34 7.14 16 42 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.04 0.91 7.41 -51.93 -0.38 0.52 16 44 H 0.07 0.56 7.77 -51.93 -0.40 0.16 16 45 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.10 0.54 8.11 -51.93 -0.42 0.12 16 47 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.09 0.52 8.05 -51.93 -0.42 0.11 16 49 H 0.09 0.43 7.58 -51.93 -0.39 0.03 16 50 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 398.29 15.07 6.00 6.00 Total: -1.00 -36.87 398.29 -10.20 -47.07 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -8.27 Total: -1.07 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: -2.24 Total: 7.59 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: -0.82 Total: -59.68 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: 0.16 Total: -17.69 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.87 -10.20 -47.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108593770.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.330 kcal (2) G-P(sol) polarization free energy of solvation -36.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds