Wall clock time and date at job start Tue Mar 31 2020 19:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46937 * 2 1 4 4 C 1.52999 * 109.46735 * 119.99657 * 2 1 3 5 5 C 1.50699 * 109.47169 * 294.99872 * 4 2 1 6 6 O 1.21285 * 120.00112 * 0.02562 * 5 4 2 7 7 N 1.34778 * 120.00079 * 180.02562 * 5 4 2 8 8 C 1.46498 * 120.00042 * 180.02562 * 7 5 4 9 9 H 1.09007 * 110.85357 * 322.65657 * 8 7 5 10 10 C 1.54627 * 110.97473 * 86.44740 * 8 7 5 11 11 C 1.51276 * 104.19344 * 142.91593 * 10 8 7 12 12 O 1.21288 * 124.93960 * 163.71236 * 11 10 8 13 13 N 1.34421 * 110.12027 * 343.74740 * 11 10 8 14 14 C 1.46501 * 124.35143 * 179.57179 * 13 11 10 15 15 C 1.53945 * 113.74412 * 36.64966 * 14 13 11 16 16 N 1.47583 * 86.11821 * 222.05155 * 15 14 13 17 17 C 1.36935 * 134.48778 * 204.64631 * 16 15 14 18 18 H 1.08005 * 119.99889 * 179.97438 * 17 16 15 19 19 C 1.38813 * 120.00122 * 359.97438 * 17 16 15 20 20 N 1.31617 * 120.00227 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99826 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47248 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47440 * 119.99832 * 21 19 17 24 24 H 1.48500 * 109.47050 * 240.00124 * 21 19 17 25 25 C 1.47579 * 91.01534 * 24.64128 * 16 15 14 26 26 C 1.46767 * 111.29830 * 359.59558 * 13 11 10 27 27 C 1.52998 * 109.47057 * 239.99457 * 2 1 3 28 28 C 1.53000 * 117.49463 * 111.38102 * 27 2 1 29 29 C 1.52997 * 60.00347 * 107.48750 * 28 27 2 30 30 H 1.09003 * 109.47441 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47749 * 300.00643 * 1 2 3 32 32 H 1.09002 * 109.47268 * 60.00795 * 1 2 3 33 33 H 1.08996 * 109.47464 * 55.00139 * 4 2 1 34 34 H 1.09009 * 109.46832 * 175.00144 * 4 2 1 35 35 H 0.96993 * 120.00080 * 359.97438 * 7 5 4 36 36 H 1.08995 * 110.48817 * 261.59698 * 10 8 7 37 37 H 1.08998 * 110.48233 * 24.10881 * 10 8 7 38 38 H 1.09002 * 112.94681 * 168.38965 * 14 13 11 39 39 H 1.09001 * 113.76699 * 336.35345 * 15 14 13 40 40 H 1.08997 * 113.76997 * 107.74192 * 15 14 13 41 41 H 0.97000 * 119.99787 * 180.02562 * 20 19 17 42 42 H 1.09002 * 113.76480 * 221.06547 * 25 16 15 43 43 H 1.08993 * 113.76845 * 89.66607 * 25 16 15 44 44 H 1.08995 * 110.23813 * 258.01188 * 26 13 11 45 45 H 1.09002 * 110.24278 * 136.01378 * 26 13 11 46 46 H 1.08990 * 115.56470 * 325.69153 * 27 2 1 47 47 H 1.09002 * 117.49696 * 214.97963 * 28 27 2 48 48 H 1.09002 * 117.50343 * 359.97438 * 28 27 2 49 49 H 1.08999 * 117.49685 * 252.51237 * 29 28 27 50 50 H 1.08997 * 117.50044 * 107.48590 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0572 2.4766 6 8 1.0108 1.0871 2.3632 7 7 1.9851 -0.3912 3.7002 8 6 1.5971 0.3652 4.8932 9 1 1.6595 1.4380 4.7100 10 6 0.1796 -0.0339 5.3649 11 6 0.2671 0.0026 6.8747 12 8 -0.6853 0.0276 7.6253 13 7 1.5539 0.0039 7.2634 14 6 1.9956 0.0444 8.6597 15 6 1.0974 -0.7592 9.6175 16 7 1.2419 0.3782 10.5467 17 6 1.1525 0.5248 11.9052 18 1 1.3060 1.4947 12.3550 19 6 0.8647 -0.5732 12.7044 20 7 0.6782 -1.7552 12.1564 21 14 0.7421 -0.3730 14.5576 22 1 0.9924 1.0453 14.9199 23 1 -0.6164 -0.7674 15.0093 24 1 1.7535 -1.2377 15.2168 25 6 1.5215 1.2940 9.4237 26 6 2.4594 -0.0397 6.1093 27 6 2.0400 -0.7214 -1.2492 28 6 2.7419 0.1225 -2.3150 29 6 3.5550 -0.8281 -1.4342 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5137 -0.8901 33 1 1.6053 -1.7197 1.2953 34 1 3.1263 -0.7994 1.2057 35 1 2.4889 -1.2150 3.7909 36 1 -0.5578 0.6850 5.0080 37 1 -0.0689 -1.0373 5.0193 38 1 3.0594 -0.1631 8.7750 39 1 0.0806 -0.9009 9.2512 40 1 1.5535 -1.6814 9.9775 41 1 0.4767 -2.5223 12.7148 42 1 2.3163 2.0111 9.6291 43 1 0.6293 1.7555 9.0007 44 1 2.8509 -1.0481 5.9751 45 1 3.2771 0.6683 6.2444 46 1 1.4310 -1.5584 -1.5905 47 1 2.5947 -0.1595 -3.3576 48 1 2.8400 1.1916 -2.1266 49 1 4.1883 -0.3845 -0.6659 50 1 3.9428 -1.7355 -1.8972 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108593770.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:57 Heat of formation + Delta-G solvation = -11.361744 kcal Electronic energy + Delta-G solvation = -28824.336754 eV Core-core repulsion = 24853.223432 eV Total energy + Delta-G solvation = -3971.113322 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.91216 -40.78717 -39.07907 -38.62239 -37.58512 -35.23050 -34.17567 -33.97970 -31.75153 -29.34354 -29.01272 -27.88312 -26.62080 -25.27704 -24.47675 -23.16832 -22.73676 -22.12783 -21.56453 -20.48578 -19.78663 -18.81024 -18.15307 -17.81313 -17.54141 -17.02869 -16.60365 -16.43730 -16.02736 -15.90438 -15.62731 -15.48981 -15.06135 -14.91327 -14.63680 -14.33416 -14.22287 -14.00924 -13.81137 -13.59777 -13.43858 -13.27741 -12.96943 -12.84662 -12.70731 -12.59447 -12.35630 -12.24063 -12.19116 -12.06045 -12.02928 -11.88293 -11.69468 -11.52675 -11.11999 -11.04485 -10.81484 -10.71005 -10.56240 -10.04188 -9.58251 -8.95105 -7.93778 -5.28488 1.42600 1.45411 1.55559 1.57169 1.72258 1.86755 2.22723 2.47889 2.98395 3.24803 3.34121 3.46458 3.50400 3.71176 3.77511 3.87816 3.94477 4.03635 4.08773 4.16940 4.24086 4.28408 4.40413 4.51693 4.57121 4.60810 4.64823 4.71191 4.76219 4.81705 4.82883 4.89472 4.90469 4.91791 4.97541 5.09601 5.20247 5.22265 5.23905 5.27050 5.35293 5.44266 5.47118 5.49220 5.61134 5.84159 5.88835 6.24288 6.62471 6.87754 7.21404 7.35729 7.56177 8.51731 9.23690 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.040022 B = 0.001849 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.455890 B =15142.193925 C =15309.961348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.042 4.042 3 H 0.059 0.941 4 C -0.128 4.128 5 C 0.513 3.487 6 O -0.574 6.574 7 N -0.706 5.706 8 C 0.151 3.849 9 H 0.103 0.897 10 C -0.153 4.153 11 C 0.503 3.497 12 O -0.574 6.574 13 N -0.605 5.605 14 C 0.137 3.863 15 C 0.146 3.854 16 N -0.635 5.635 17 C -0.237 4.237 18 H 0.086 0.914 19 C -0.069 4.069 20 N -0.954 5.954 21 Si 0.985 3.015 22 H -0.263 1.263 23 H -0.296 1.296 24 H -0.284 1.284 25 C 0.111 3.889 26 C 0.100 3.900 27 C -0.150 4.150 28 C -0.191 4.191 29 C -0.173 4.173 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.421 0.579 36 H 0.095 0.905 37 H 0.119 0.881 38 H 0.140 0.860 39 H 0.024 0.976 40 H 0.043 0.957 41 H 0.249 0.751 42 H 0.070 0.930 43 H 0.020 0.980 44 H 0.106 0.894 45 H 0.112 0.888 46 H 0.110 0.890 47 H 0.097 0.903 48 H 0.087 0.913 49 H 0.099 0.901 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.853 -0.931 -31.302 33.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.061 4.061 3 H 0.077 0.923 4 C -0.167 4.167 5 C 0.302 3.698 6 O -0.453 6.453 7 N -0.360 5.360 8 C 0.044 3.956 9 H 0.121 0.879 10 C -0.195 4.195 11 C 0.291 3.709 12 O -0.453 6.453 13 N -0.338 5.338 14 C 0.033 3.967 15 C 0.020 3.980 16 N -0.361 5.361 17 C -0.366 4.366 18 H 0.104 0.896 19 C -0.262 4.262 20 N -0.603 5.603 21 Si 0.813 3.187 22 H -0.187 1.187 23 H -0.223 1.223 24 H -0.211 1.211 25 C -0.015 4.015 26 C -0.022 4.022 27 C -0.168 4.168 28 C -0.228 4.228 29 C -0.210 4.210 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.260 0.740 36 H 0.113 0.887 37 H 0.137 0.863 38 H 0.157 0.843 39 H 0.042 0.958 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.088 0.912 43 H 0.038 0.962 44 H 0.124 0.876 45 H 0.130 0.870 46 H 0.128 0.872 47 H 0.116 0.884 48 H 0.105 0.895 49 H 0.117 0.883 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.937 -0.268 -30.610 32.183 hybrid contribution -0.724 -0.267 1.386 1.586 sum 9.213 -0.535 -29.224 30.647 Atomic orbital electron populations 1.21887 0.95259 1.01770 1.01759 1.20382 0.95673 0.98215 0.91823 0.92255 1.21773 1.04627 1.00450 0.89892 1.21304 0.77943 0.85235 0.85358 1.90707 1.40974 1.26491 1.87080 1.45818 1.57972 1.28146 1.04088 1.21498 0.91301 0.97857 0.84915 0.87921 1.22736 1.00694 1.05675 0.90357 1.21502 0.82729 0.74791 0.91854 1.90754 1.41882 1.51503 1.61188 1.48450 1.06912 1.72028 1.06408 1.23401 0.99950 0.96285 0.77060 1.22589 0.96568 0.92353 0.86459 1.46107 1.82494 1.06924 1.00624 1.19485 1.40935 0.95199 0.80950 0.89649 1.25738 1.02172 0.95259 1.03033 1.70048 1.55351 0.99650 1.35220 0.84918 0.76751 0.78018 0.79048 1.18732 1.22316 1.21088 1.23023 0.97174 0.94308 0.87041 1.22543 0.92631 1.04934 0.82142 1.22335 0.95383 1.01993 0.97056 1.23068 1.05350 0.97603 0.96756 1.23038 0.93221 1.01811 1.02919 0.92147 0.92966 0.93177 0.86551 0.86277 0.73987 0.88688 0.86310 0.84278 0.95789 0.93894 0.94211 0.91227 0.96216 0.87574 0.87018 0.87169 0.88441 0.89456 0.88251 0.87830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 8.92 71.98 0.64 -1.55 16 2 C -0.04 -0.49 2.19 -10.80 -0.02 -0.51 16 3 H 0.06 0.93 7.71 -2.39 -0.02 0.91 16 4 C -0.13 -0.97 5.09 29.85 0.15 -0.82 16 5 C 0.51 7.14 7.55 87.66 0.66 7.80 16 6 O -0.57 -13.33 13.71 -3.04 -0.04 -13.37 16 7 N -0.71 -6.99 5.18 -437.52 -2.27 -9.26 16 8 C 0.15 2.38 3.43 46.05 0.16 2.54 16 9 H 0.10 1.88 7.72 -2.38 -0.02 1.86 16 10 C -0.15 -3.52 6.59 30.59 0.20 -3.32 16 11 C 0.50 17.27 7.44 87.90 0.65 17.93 16 12 O -0.57 -27.36 14.64 -3.05 -0.04 -27.40 16 13 N -0.60 -17.51 3.15 -799.67 -2.52 -20.04 16 14 C 0.14 5.06 4.82 46.75 0.23 5.28 16 15 C 0.15 7.60 6.88 86.48 0.60 8.20 16 16 N -0.63 -35.17 3.70 -717.30 -2.65 -37.82 16 17 C -0.24 -14.13 10.70 84.03 0.90 -13.23 16 18 H 0.09 4.83 7.83 -2.91 -0.02 4.81 16 19 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 20 N -0.95 -60.57 11.38 21.65 0.25 -60.32 16 21 Si 0.99 47.58 29.55 68.60 2.03 49.60 16 22 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 24 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 25 C 0.11 4.84 8.45 86.48 0.73 5.57 16 26 C 0.10 1.52 7.07 86.83 0.61 2.13 16 27 C -0.15 -1.30 5.15 -10.79 -0.06 -1.36 16 28 C -0.19 -1.75 10.18 30.59 0.31 -1.44 16 29 C -0.17 -1.17 9.67 30.60 0.30 -0.87 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 1.05 5.95 -2.39 -0.01 1.04 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.12 0.37 7.13 -2.38 -0.02 0.35 16 35 H 0.42 1.26 8.37 -92.71 -0.78 0.49 16 36 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.12 2.37 8.08 -2.39 -0.02 2.35 16 38 H 0.14 4.29 8.14 -2.39 -0.02 4.27 16 39 H 0.02 1.43 5.58 -2.39 -0.01 1.42 16 40 H 0.04 2.42 7.15 -2.39 -0.02 2.40 16 41 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 42 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 43 H 0.02 0.95 7.41 -2.39 -0.02 0.94 16 44 H 0.11 1.03 7.77 -2.39 -0.02 1.01 16 45 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.11 0.86 8.11 -2.39 -0.02 0.84 16 47 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.09 0.91 8.05 -2.39 -0.02 0.90 16 49 H 0.10 0.58 7.58 -2.39 -0.02 0.56 16 50 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -86.98 398.29 1.44 -85.54 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.17 Total: 10.40 kcal Atomic # 6 Polarization: 16.14 SS G_CDS: 6.53 Total: 22.67 kcal Atomic # 7 Polarization: -120.25 SS G_CDS: -7.20 Total: -127.44 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -0.09 Total: -40.77 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.60 kcal Total: -86.98 1.44 -85.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108593770.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.183 kcal (2) G-P(sol) polarization free energy of solvation -86.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds