Wall clock time and date at job start Tue Mar 31 2020 18:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46784 * 2 1 4 4 C 1.50696 * 109.47028 * 119.99494 * 2 1 3 5 5 O 1.21284 * 120.00026 * 120.00233 * 4 2 1 6 6 N 1.34780 * 120.00421 * 300.00484 * 4 2 1 7 7 C 1.46496 * 120.00017 * 180.02562 * 6 4 2 8 8 H 1.09000 * 110.54872 * 36.88931 * 7 6 4 9 9 C 1.54839 * 110.61158 * 159.92795 * 7 6 4 10 10 C 1.55850 * 103.51553 * 118.50483 * 9 7 6 11 11 H 1.09003 * 115.57758 * 159.64592 * 10 9 7 12 12 C 1.56216 * 105.11735 * 288.26258 * 10 9 7 13 13 C 1.54836 * 103.34709 * 71.63524 * 12 10 9 14 14 C 1.55850 * 103.65617 * 0.11819 * 13 12 10 15 15 H 1.08998 * 115.58245 * 159.56598 * 14 13 12 16 16 N 1.50643 * 101.03198 * 32.99540 * 10 9 7 17 17 C 1.46896 * 111.00177 * 189.76280 * 16 10 9 18 18 C 1.50703 * 109.46920 * 278.08833 * 17 16 10 19 19 O 1.21294 * 119.99870 * 359.97438 * 18 17 16 20 20 N 1.34780 * 119.99959 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99600 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00158 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99600 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99751 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99989 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47248 * 90.00282 * 25 23 21 27 27 H 1.48504 * 109.46715 * 209.99701 * 25 23 21 28 28 H 1.48494 * 109.47011 * 329.99551 * 25 23 21 29 29 C 1.52993 * 109.47374 * 240.00157 * 2 1 3 30 30 C 1.52995 * 117.50396 * 128.62100 * 29 2 1 31 31 C 1.52995 * 60.00085 * 252.50900 * 30 29 2 32 32 H 1.08996 * 109.47644 * 300.00223 * 1 2 3 33 33 H 1.08998 * 109.47135 * 60.00266 * 1 2 3 34 34 H 1.08999 * 109.46784 * 180.02562 * 1 2 3 35 35 H 0.96999 * 119.99480 * 359.97438 * 6 4 2 36 36 H 1.08994 * 110.61207 * 237.01193 * 9 7 6 37 37 H 1.09000 * 110.61191 * 359.84314 * 9 7 6 38 38 H 1.09005 * 110.66254 * 313.20248 * 12 10 9 39 39 H 1.08996 * 110.72683 * 190.10870 * 12 10 9 40 40 H 1.08996 * 110.61342 * 241.53089 * 13 12 10 41 41 H 1.08997 * 110.61067 * 118.70018 * 13 12 10 42 42 H 1.08994 * 109.47275 * 38.08793 * 17 16 10 43 43 H 1.08998 * 109.47318 * 158.08878 * 17 16 10 44 44 H 0.96993 * 119.99775 * 0.02562 * 20 18 17 45 45 H 0.97002 * 119.99986 * 180.02562 * 24 23 21 46 46 H 1.09007 * 115.54743 * 274.32840 * 29 2 1 47 47 H 1.09001 * 117.49780 * 359.97438 * 30 29 2 48 48 H 1.09002 * 117.50171 * 145.01625 * 30 29 2 49 49 H 1.09003 * 117.49730 * 252.50901 * 31 30 29 50 50 H 1.08997 * 117.52292 * 107.48116 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7066 -0.2498 2.4546 7 6 2.1954 -0.9401 3.6508 8 1 3.2082 -1.3104 3.4918 9 6 2.1413 -0.0022 4.8817 10 6 1.1594 -0.7284 5.8499 11 1 1.2320 -0.4387 6.8982 12 6 -0.2516 -0.5598 5.2012 13 6 -0.1933 -1.4970 3.9700 14 6 1.2390 -2.1075 4.0399 15 1 1.3820 -3.0367 3.4884 16 7 1.4530 -2.1708 5.5298 17 6 0.4723 -3.0612 6.1650 18 6 0.8619 -3.2939 7.6020 19 8 1.8588 -2.7700 8.0526 20 7 0.1027 -4.0842 8.3866 21 6 0.4569 -4.2954 9.6941 22 1 1.3445 -3.8289 10.0952 23 6 -0.3255 -5.1106 10.5028 24 7 0.0143 -5.3135 11.7559 25 14 -1.8596 -5.9192 9.8083 26 1 -1.5062 -7.2447 9.2395 27 1 -2.8594 -6.0963 10.8919 28 1 -2.4325 -5.0595 8.7417 29 6 2.0400 -0.7212 -1.2492 30 6 3.0741 0.0052 -2.1116 31 6 1.6358 -0.1495 -2.6095 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.1492 0.5390 2.5435 36 1 3.1277 0.0926 5.3355 37 1 1.7533 0.9770 4.6012 38 1 -0.4112 0.4727 4.8902 39 1 -1.0336 -0.8793 5.8900 40 1 -0.3238 -0.9291 3.0489 41 1 -0.9481 -2.2795 4.0473 42 1 -0.5149 -2.6009 6.1262 43 1 0.4501 -4.0138 5.6357 44 1 -0.6942 -4.5034 8.0262 45 1 -0.5317 -5.8829 12.3204 46 1 2.1268 -1.8044 -1.1641 47 1 3.3908 0.9971 -1.7893 48 1 3.8416 -0.6001 -2.5940 49 1 1.4569 -0.8566 -3.4196 50 1 1.0061 0.7402 -2.6146 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109117637.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:40 Heat of formation + Delta-G solvation = -13.280788 kcal Electronic energy + Delta-G solvation = -29702.437075 eV Core-core repulsion = 25731.240537 eV Total energy + Delta-G solvation = -3971.196538 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.33535 -39.84885 -38.05127 -37.46267 -34.72495 -33.88667 -32.68679 -31.65565 -30.96664 -30.16943 -28.91508 -26.60521 -25.40596 -23.98318 -22.67134 -22.51426 -21.65570 -20.41481 -19.83627 -19.53467 -19.18177 -18.23211 -17.64224 -16.50550 -16.31742 -16.01534 -15.47932 -15.32364 -15.15144 -14.75857 -14.69327 -14.19297 -13.95036 -13.45084 -13.36858 -13.17036 -13.01596 -12.68806 -12.55108 -12.50472 -12.33323 -12.08261 -12.04147 -11.84911 -11.79813 -11.58073 -11.35883 -11.32849 -11.11760 -11.00000 -10.84044 -10.71578 -10.57345 -10.38459 -10.24189 -9.94865 -9.86962 -9.52206 -9.17892 -8.64604 -8.16082 -8.12969 -6.27623 -3.78594 2.44993 2.86230 3.03798 3.08838 3.16504 3.46818 3.78792 3.90712 4.12873 4.18790 4.32245 4.45574 4.49947 4.52239 4.65575 4.68503 4.82841 4.92949 4.98439 4.99317 5.04071 5.15217 5.18141 5.23488 5.25325 5.25799 5.29977 5.34699 5.44382 5.52874 5.55527 5.58866 5.68320 5.72719 5.75339 5.78270 5.90287 5.94241 5.95670 5.98059 6.01848 6.09365 6.27948 6.33751 6.78531 7.08420 7.29518 7.62397 8.05033 8.18611 8.64873 8.99645 9.46876 9.89362 10.85728 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026081 B = 0.002288 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.308021 B =12236.175465 C =12540.220828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 H 0.095 0.905 4 C 0.518 3.482 5 O -0.531 6.531 6 N -0.719 5.719 7 C 0.150 3.850 8 H 0.099 0.901 9 C -0.117 4.117 10 C 0.057 3.943 11 H 0.123 0.877 12 C -0.158 4.158 13 C -0.154 4.154 14 C 0.037 3.963 15 H 0.114 0.886 16 N -0.461 5.461 17 C 0.022 3.978 18 C 0.457 3.543 19 O -0.557 6.557 20 N -0.595 5.595 21 C -0.302 4.302 22 H 0.119 0.881 23 C 0.040 3.960 24 N -0.883 5.883 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.271 1.271 29 C -0.135 4.135 30 C -0.178 4.178 31 C -0.179 4.179 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.397 0.603 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.087 0.913 44 H 0.369 0.631 45 H 0.272 0.728 46 H 0.117 0.883 47 H 0.092 0.908 48 H 0.094 0.906 49 H 0.095 0.905 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.320 14.099 -26.958 30.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.102 4.102 3 H 0.113 0.887 4 C 0.304 3.696 5 O -0.407 6.407 6 N -0.371 5.371 7 C 0.045 3.955 8 H 0.117 0.883 9 C -0.156 4.156 10 C -0.052 4.052 11 H 0.141 0.859 12 C -0.197 4.197 13 C -0.193 4.193 14 C -0.073 4.073 15 H 0.132 0.868 16 N -0.184 5.184 17 C -0.110 4.110 18 C 0.242 3.758 19 O -0.438 6.438 20 N -0.235 5.235 21 C -0.431 4.431 22 H 0.137 0.863 23 C -0.163 4.163 24 N -0.524 5.524 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.203 1.203 28 H -0.196 1.196 29 C -0.153 4.153 30 C -0.214 4.214 31 C -0.216 4.216 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.232 0.768 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.105 0.895 44 H 0.202 0.798 45 H 0.083 0.917 46 H 0.135 0.865 47 H 0.111 0.889 48 H 0.113 0.887 49 H 0.113 0.887 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.572 13.394 -26.299 29.555 hybrid contribution -2.533 -0.193 -0.523 2.594 sum -4.106 13.201 -26.821 30.174 Atomic orbital electron populations 1.21757 0.92572 1.03089 1.02508 1.20863 0.97362 0.99917 0.92033 0.88685 1.20525 0.79965 0.84639 0.84455 1.90717 1.37291 1.26049 1.86630 1.46165 1.53691 1.31721 1.05563 1.21872 0.98425 0.91975 0.83224 0.88320 1.22873 1.01254 0.96981 0.94474 1.24518 0.91992 0.89045 0.99632 0.85941 1.23410 0.99336 0.99747 0.97204 1.23266 0.98204 0.99285 0.98538 1.24810 0.93562 0.98329 0.90633 0.86787 1.67341 1.44442 1.04336 1.02233 1.22145 0.94982 0.98230 0.95621 1.19635 0.85865 0.83583 0.86712 1.90557 1.26880 1.51619 1.74782 1.42214 1.24730 1.44831 1.11740 1.19418 1.11703 1.27916 0.84022 0.86318 1.25030 0.98251 0.97572 0.95421 1.69624 1.39132 1.38020 1.05603 0.86679 0.83300 0.80317 0.79111 1.19649 1.20258 1.19619 1.22043 1.03440 1.00217 0.89600 1.23009 0.92590 1.01835 1.04016 1.22974 0.98202 1.03229 0.97208 0.92150 0.91318 0.91756 0.76760 0.89683 0.90939 0.91216 0.91126 0.90994 0.91628 0.92061 0.89524 0.79847 0.91699 0.86542 0.88919 0.88705 0.88698 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 8.93 37.16 0.33 -0.41 16 2 C -0.08 -0.55 2.88 -91.78 -0.26 -0.82 16 3 H 0.10 0.52 7.90 -51.93 -0.41 0.11 16 4 C 0.52 5.19 7.15 -10.99 -0.08 5.11 16 5 O -0.53 -7.63 15.37 5.55 0.09 -7.55 16 6 N -0.72 -6.09 3.53 -51.40 -0.18 -6.27 16 7 C 0.15 1.69 3.07 -65.44 -0.20 1.49 16 8 H 0.10 1.35 7.70 -51.93 -0.40 0.95 16 9 C -0.12 -1.27 6.20 -24.24 -0.15 -1.42 16 10 C 0.06 0.77 4.56 -62.36 -0.28 0.49 16 11 H 0.12 1.95 7.99 -51.93 -0.42 1.54 16 12 C -0.16 -1.70 5.65 -24.04 -0.14 -1.84 16 13 C -0.15 -1.58 5.51 -24.24 -0.13 -1.72 16 14 C 0.04 0.46 4.80 -62.55 -0.30 0.16 16 15 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 16 N -0.46 -7.35 5.09 -206.78 -1.05 -8.40 16 17 C 0.02 0.38 4.83 -4.98 -0.02 0.36 16 18 C 0.46 10.51 7.72 -10.98 -0.08 10.42 16 19 O -0.56 -15.10 15.61 5.55 0.09 -15.01 16 20 N -0.60 -14.36 5.09 -10.96 -0.06 -14.41 16 21 C -0.30 -8.62 10.16 -14.93 -0.15 -8.77 16 22 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 23 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 24 N -0.88 -26.05 13.96 55.50 0.77 -25.28 16 25 Si 0.88 19.60 27.74 -169.99 -4.72 14.89 16 26 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 29 C -0.13 -1.06 4.76 -90.63 -0.43 -1.49 16 30 C -0.18 -1.23 10.18 -26.74 -0.27 -1.50 16 31 C -0.18 -1.06 9.73 -26.74 -0.26 -1.33 16 32 H 0.06 0.25 7.56 -51.93 -0.39 -0.15 16 33 H 0.07 0.29 7.29 -51.93 -0.38 -0.09 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.40 2.32 7.43 -40.82 -0.30 2.02 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.58 7.36 -51.93 -0.38 0.20 16 38 H 0.07 0.59 7.84 -51.93 -0.41 0.19 16 39 H 0.07 0.83 6.95 -51.93 -0.36 0.47 16 40 H 0.07 0.61 6.48 -51.93 -0.34 0.28 16 41 H 0.06 0.69 7.64 -51.93 -0.40 0.30 16 42 H 0.06 0.92 5.09 -51.93 -0.26 0.66 16 43 H 0.09 1.35 8.09 -51.93 -0.42 0.93 16 44 H 0.37 7.85 5.76 -40.82 -0.24 7.62 16 45 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.12 1.16 7.47 -51.93 -0.39 0.77 16 47 H 0.09 0.57 8.05 -51.93 -0.42 0.15 16 48 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 49 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.09 0.45 7.61 -51.93 -0.39 0.06 16 LS Contribution 389.35 15.07 5.87 5.87 Total: -1.00 -34.60 389.35 -9.70 -44.30 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -7.97 Total: 12.11 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -2.54 Total: -0.25 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.51 Total: -54.36 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: 0.17 Total: -22.56 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.72 Total: 14.89 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.60 -9.70 -44.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109117637.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.020 kcal (2) G-P(sol) polarization free energy of solvation -34.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds