Wall clock time and date at job start Tue Mar 31 2020 19:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47262 * 2 1 4 4 C 1.52996 * 109.47266 * 119.99816 * 2 1 3 5 5 C 1.50697 * 109.47371 * 184.99847 * 4 2 1 6 6 O 1.21283 * 120.00029 * 0.02562 * 5 4 2 7 7 N 1.34782 * 120.00236 * 180.02562 * 5 4 2 8 8 C 1.46497 * 119.99905 * 180.02562 * 7 5 4 9 9 H 1.09000 * 110.56209 * 36.97113 * 8 7 5 10 10 C 1.54856 * 110.62518 * 160.04197 * 8 7 5 11 11 C 1.55848 * 103.44466 * 118.49008 * 10 8 7 12 12 H 1.08996 * 116.12760 * 159.15315 * 11 10 8 13 13 C 1.55852 * 105.06064 * 288.17650 * 11 10 8 14 14 C 1.54847 * 103.44674 * 71.82484 * 13 11 10 15 15 C 1.55844 * 110.62732 * 274.06565 * 8 7 5 16 16 H 1.09002 * 115.56211 * 82.69813 * 15 8 7 17 17 N 1.50235 * 101.05456 * 208.57662 * 15 8 7 18 18 C 1.36943 * 130.83517 * 233.98969 * 17 15 8 19 19 H 1.07993 * 120.00524 * 359.97438 * 18 17 15 20 20 C 1.38816 * 119.99434 * 179.97438 * 18 17 15 21 21 N 1.31614 * 120.00001 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99643 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46962 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47288 * 119.99526 * 22 20 18 25 25 H 1.48500 * 109.46830 * 239.99961 * 22 20 18 26 26 N 1.46496 * 109.47137 * 239.99895 * 2 1 3 27 27 C 1.46764 * 124.34913 * 120.00007 * 26 2 1 28 28 C 1.54481 * 105.47618 * 197.01976 * 27 26 2 29 29 C 1.54635 * 101.76121 * 334.58272 * 28 27 26 30 30 C 1.34412 * 124.35165 * 299.70206 * 26 2 1 31 31 O 1.21288 * 124.94470 * 359.56832 * 30 26 2 32 32 H 1.09000 * 109.46750 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46900 * 299.99958 * 1 2 3 34 34 H 1.09001 * 109.46729 * 60.00062 * 1 2 3 35 35 H 1.09006 * 109.47349 * 65.00092 * 4 2 1 36 36 H 1.09000 * 109.47495 * 304.99951 * 4 2 1 37 37 H 0.96998 * 119.99791 * 359.97438 * 7 5 4 38 38 H 1.09005 * 110.62656 * 236.97441 * 10 8 7 39 39 H 1.08993 * 110.62541 * 0.02562 * 10 8 7 40 40 H 1.09002 * 110.62211 * 190.31690 * 13 11 10 41 41 H 1.08999 * 110.62578 * 313.17146 * 13 11 10 42 42 H 1.09002 * 110.62582 * 241.50656 * 14 13 11 43 43 H 1.09001 * 110.62478 * 118.48852 * 14 13 11 44 44 H 0.97006 * 119.99429 * 179.97438 * 21 20 18 45 45 H 1.09000 * 110.24842 * 316.01744 * 27 26 2 46 46 H 1.08997 * 110.24947 * 77.92827 * 27 26 2 47 47 H 1.08996 * 110.97546 * 92.69985 * 28 27 26 48 48 H 1.09003 * 110.96807 * 216.46640 * 28 27 26 49 49 H 1.08994 * 110.48432 * 143.48136 * 29 28 27 50 50 H 1.09000 * 110.48640 * 265.98822 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5419 -0.6149 1.3127 6 8 4.1450 -0.0204 0.4445 7 7 4.2150 -1.1805 2.3343 8 6 5.6750 -1.0766 2.3962 9 1 6.0048 -0.1006 2.0402 10 6 6.1795 -1.3344 3.8374 11 6 7.0828 -2.5953 3.6850 12 1 7.8160 -2.7587 4.4747 13 6 6.0944 -3.7732 3.4310 14 6 5.5898 -3.5154 1.9899 15 6 6.3421 -2.2169 1.5694 16 1 6.4235 -2.0350 0.4978 17 7 7.6406 -2.3850 2.3060 18 6 8.9344 -2.3552 1.8583 19 1 9.1399 -2.1880 0.8114 20 6 9.9819 -2.5401 2.7503 21 7 9.7315 -2.7434 4.0263 22 14 11.7468 -2.4987 2.1398 23 1 11.7582 -2.2553 0.6750 24 1 12.4836 -1.4090 2.8289 25 1 12.4015 -3.7996 2.4300 26 7 2.0184 -0.6906 -1.1961 27 6 2.8656 -0.0712 -2.2221 28 6 2.7609 -0.9949 -3.4559 29 6 2.4039 -2.3513 -2.8048 30 6 1.7528 -1.9745 -1.4921 31 8 1.0860 -2.7217 -0.8079 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.7517 -1.7715 1.2056 36 1 1.6055 -0.2617 2.1370 37 1 3.7327 -1.6556 3.0289 38 1 6.7618 -0.4863 4.1979 39 1 5.3436 -1.5399 4.5059 40 1 6.6136 -4.7297 3.4908 41 1 5.2682 -3.7411 4.1412 42 1 4.5119 -3.3539 1.9836 43 1 5.8588 -4.3441 1.3349 44 1 10.4635 -2.8729 4.6495 45 1 2.4967 0.9253 -2.4647 46 1 3.8979 -0.0169 -1.8764 47 1 1.9676 -0.6630 -4.1256 48 1 3.7141 -1.0534 -3.9814 49 1 1.7074 -2.9050 -3.4343 50 1 3.3051 -2.9381 -2.6269 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109973606.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:44 Heat of formation + Delta-G solvation = -23.512359 kcal Electronic energy + Delta-G solvation = -30962.224026 eV Core-core repulsion = 26990.583814 eV Total energy + Delta-G solvation = -3971.640212 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -40.73011 -39.80775 -38.29003 -36.33858 -34.92455 -33.85502 -32.32513 -30.31259 -29.37497 -29.06091 -28.40764 -27.54192 -26.94007 -24.19092 -22.83260 -21.99799 -21.35955 -20.57446 -19.49522 -18.84624 -18.49115 -17.20643 -16.95213 -16.64787 -16.50145 -15.55110 -15.07953 -14.96846 -14.84701 -14.39418 -14.01236 -13.89190 -13.80582 -13.71535 -13.50640 -12.96593 -12.72736 -12.44821 -12.34574 -12.13935 -11.93704 -11.84783 -11.68428 -11.63631 -11.48076 -11.25265 -11.09588 -11.01651 -10.91322 -10.88036 -10.83364 -10.20982 -10.06571 -9.82747 -9.62261 -9.54661 -9.34735 -9.21836 -8.93513 -8.68831 -8.46189 -6.90932 -5.73009 -3.10848 2.60662 2.90297 2.99809 3.38612 3.43889 3.46474 3.50925 4.29407 4.41433 4.45247 4.67918 4.74556 4.78515 4.96380 5.07647 5.22177 5.24512 5.35023 5.39050 5.42268 5.49432 5.53378 5.55824 5.61471 5.65028 5.69956 5.78846 5.83864 5.86067 5.98932 5.99133 6.02799 6.08601 6.14266 6.33234 6.35164 6.55341 6.58218 6.63172 6.71559 6.82941 6.98755 7.01895 7.16464 7.28808 7.52845 7.75940 7.88869 8.17167 8.19693 8.56090 9.10328 9.72955 10.53763 11.36729 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016730 B = 0.003256 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.275562 B = 8596.947399 C = 9260.600258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.175 3.825 3 H 0.094 0.906 4 C -0.164 4.164 5 C 0.511 3.489 6 O -0.543 6.543 7 N -0.713 5.713 8 C 0.129 3.871 9 H 0.080 0.920 10 C -0.140 4.140 11 C 0.154 3.846 12 H 0.154 0.846 13 C -0.137 4.137 14 C -0.129 4.129 15 C 0.131 3.869 16 H 0.082 0.918 17 N -0.591 5.591 18 C -0.209 4.209 19 H 0.079 0.921 20 C -0.013 4.013 21 N -0.923 5.923 22 Si 0.916 3.084 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 N -0.600 5.600 27 C 0.105 3.895 28 C -0.132 4.132 29 C -0.156 4.156 30 C 0.517 3.483 31 O -0.540 6.540 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.394 0.606 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.044 0.956 42 H 0.050 0.950 43 H 0.049 0.951 44 H 0.253 0.747 45 H 0.072 0.928 46 H 0.088 0.912 47 H 0.077 0.923 48 H 0.089 0.911 49 H 0.097 0.903 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.279 5.300 -8.029 20.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.072 3.928 3 H 0.112 0.888 4 C -0.204 4.204 5 C 0.297 3.703 6 O -0.421 6.421 7 N -0.364 5.364 8 C 0.024 3.976 9 H 0.098 0.902 10 C -0.180 4.180 11 C 0.047 3.953 12 H 0.171 0.829 13 C -0.176 4.176 14 C -0.169 4.169 15 C 0.022 3.978 16 H 0.100 0.900 17 N -0.311 5.311 18 C -0.337 4.337 19 H 0.097 0.903 20 C -0.208 4.208 21 N -0.572 5.572 22 Si 0.747 3.253 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.218 1.218 26 N -0.333 5.333 27 C -0.018 4.018 28 C -0.170 4.170 29 C -0.197 4.197 30 C 0.305 3.695 31 O -0.418 6.418 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.125 0.875 36 H 0.117 0.883 37 H 0.228 0.772 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.090 0.910 46 H 0.107 0.893 47 H 0.096 0.904 48 H 0.107 0.893 49 H 0.115 0.885 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.842 5.383 -8.204 20.362 hybrid contribution 0.686 -0.209 0.080 0.722 sum -17.156 5.174 -8.124 19.675 Atomic orbital electron populations 1.22182 0.94446 1.03678 1.02152 1.20609 0.93434 0.96292 0.82492 0.88758 1.22195 0.93540 1.04961 0.99749 1.20455 0.89430 0.78618 0.81760 1.90623 1.70364 1.42918 1.38183 1.46266 1.08414 1.55628 1.26070 1.22587 0.76951 1.00269 0.97839 0.90205 1.23278 0.99116 1.02096 0.93525 1.23760 0.91767 0.88779 0.90980 0.82883 1.23051 0.98455 1.01063 0.95080 1.22885 0.97897 0.98618 0.97475 1.23156 0.86805 0.92716 0.95173 0.89956 1.46493 0.99481 1.81722 1.03421 1.19105 0.80242 1.40940 0.93386 0.90318 1.24694 0.97888 1.02741 0.95459 1.69448 1.29908 1.56188 1.01639 0.85963 0.84395 0.77207 0.77746 1.20562 1.21779 1.21813 1.48174 1.50331 1.12006 1.22795 1.22133 0.96694 0.96351 0.86576 1.22603 1.03163 0.94181 0.97091 1.22323 1.02848 0.98946 0.95545 1.20846 0.79594 0.81576 0.87496 1.90671 1.40569 1.54529 1.56016 0.90929 0.91372 0.92263 0.87525 0.88276 0.77185 0.91694 0.92787 0.92720 0.93689 0.93104 0.93237 0.93630 0.90998 0.89339 0.90438 0.89281 0.88473 0.87887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 9.20 37.16 0.34 -1.15 16 2 C 0.17 1.87 2.43 -67.93 -0.16 1.70 16 3 H 0.09 0.98 7.88 -51.93 -0.41 0.57 16 4 C -0.16 -1.85 5.12 -27.89 -0.14 -2.00 16 5 C 0.51 7.49 7.69 -10.98 -0.08 7.40 16 6 O -0.54 -9.37 13.38 5.56 0.07 -9.30 16 7 N -0.71 -10.57 3.63 -51.40 -0.19 -10.75 16 8 C 0.13 2.41 3.08 -65.44 -0.20 2.21 16 9 H 0.08 1.66 7.70 -51.93 -0.40 1.26 16 10 C -0.14 -2.67 6.20 -24.23 -0.15 -2.82 16 11 C 0.15 3.49 4.72 -62.80 -0.30 3.19 16 12 H 0.15 3.97 5.52 -51.93 -0.29 3.68 16 13 C -0.14 -2.71 6.44 -24.23 -0.16 -2.87 16 14 C -0.13 -2.48 6.32 -24.24 -0.15 -2.63 16 15 C 0.13 2.76 5.35 -62.80 -0.34 2.43 16 16 H 0.08 1.82 8.14 -51.93 -0.42 1.39 16 17 N -0.59 -14.77 2.99 -145.82 -0.44 -15.20 16 18 C -0.21 -5.76 10.59 -15.05 -0.16 -5.92 16 19 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.92 -26.22 10.46 55.49 0.58 -25.64 16 22 Si 0.92 22.01 29.55 -169.99 -5.02 16.98 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 N -0.60 -6.94 2.20 -164.85 -0.36 -7.30 16 27 C 0.11 1.05 6.82 -3.12 -0.02 1.03 16 28 C -0.13 -1.03 7.18 -25.09 -0.18 -1.21 16 29 C -0.16 -1.54 6.86 -26.74 -0.18 -1.72 16 30 C 0.52 6.73 7.40 -10.86 -0.08 6.65 16 31 O -0.54 -8.61 15.07 5.55 0.08 -8.53 16 32 H 0.07 0.80 6.82 -51.93 -0.35 0.44 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.11 1.36 6.60 -51.93 -0.34 1.02 16 36 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.39 4.98 8.02 -40.82 -0.33 4.66 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.05 0.87 7.34 -51.93 -0.38 0.49 16 40 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.04 0.76 7.82 -51.93 -0.41 0.35 16 42 H 0.05 0.87 6.48 -51.93 -0.34 0.53 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.09 1.10 6.80 -51.93 -0.35 0.74 16 47 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 384.31 15.07 5.79 5.79 Total: -1.00 -32.11 384.31 -9.76 -41.87 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -8.22 Total: 8.25 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -2.06 Total: 3.83 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: -0.40 Total: -58.90 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: 0.16 Total: -17.83 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.11 -9.76 -41.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109973606.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.355 kcal (2) G-P(sol) polarization free energy of solvation -32.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds