Wall clock time and date at job start Tue Mar 31 2020 19:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47262 * 2 1 4 4 C 1.52996 * 109.47266 * 119.99816 * 2 1 3 5 5 C 1.50697 * 109.47371 * 184.99847 * 4 2 1 6 6 O 1.21283 * 120.00029 * 0.02562 * 5 4 2 7 7 N 1.34782 * 120.00236 * 180.02562 * 5 4 2 8 8 C 1.46497 * 119.99905 * 180.02562 * 7 5 4 9 9 H 1.09000 * 110.56209 * 36.97113 * 8 7 5 10 10 C 1.54856 * 110.62518 * 160.04197 * 8 7 5 11 11 C 1.55848 * 103.44466 * 118.49008 * 10 8 7 12 12 H 1.08996 * 116.12760 * 159.15315 * 11 10 8 13 13 C 1.55852 * 105.06064 * 288.17650 * 11 10 8 14 14 C 1.54847 * 103.44674 * 71.82484 * 13 11 10 15 15 C 1.55844 * 110.62732 * 274.06565 * 8 7 5 16 16 H 1.09002 * 115.56211 * 82.69813 * 15 8 7 17 17 N 1.50235 * 101.05456 * 208.57662 * 15 8 7 18 18 C 1.36943 * 130.83517 * 233.98969 * 17 15 8 19 19 H 1.07993 * 120.00524 * 359.97438 * 18 17 15 20 20 C 1.38816 * 119.99434 * 179.97438 * 18 17 15 21 21 N 1.31614 * 120.00001 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99643 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46962 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47288 * 119.99526 * 22 20 18 25 25 H 1.48500 * 109.46830 * 239.99961 * 22 20 18 26 26 N 1.46496 * 109.47137 * 239.99895 * 2 1 3 27 27 C 1.46764 * 124.34913 * 120.00007 * 26 2 1 28 28 C 1.54481 * 105.47618 * 197.01976 * 27 26 2 29 29 C 1.54635 * 101.76121 * 334.58272 * 28 27 26 30 30 C 1.34412 * 124.35165 * 299.70206 * 26 2 1 31 31 O 1.21288 * 124.94470 * 359.56832 * 30 26 2 32 32 H 1.09000 * 109.46750 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46900 * 299.99958 * 1 2 3 34 34 H 1.09001 * 109.46729 * 60.00062 * 1 2 3 35 35 H 1.09006 * 109.47349 * 65.00092 * 4 2 1 36 36 H 1.09000 * 109.47495 * 304.99951 * 4 2 1 37 37 H 0.96998 * 119.99791 * 359.97438 * 7 5 4 38 38 H 1.09005 * 110.62656 * 236.97441 * 10 8 7 39 39 H 1.08993 * 110.62541 * 0.02562 * 10 8 7 40 40 H 1.09002 * 110.62211 * 190.31690 * 13 11 10 41 41 H 1.08999 * 110.62578 * 313.17146 * 13 11 10 42 42 H 1.09002 * 110.62582 * 241.50656 * 14 13 11 43 43 H 1.09001 * 110.62478 * 118.48852 * 14 13 11 44 44 H 0.97006 * 119.99429 * 179.97438 * 21 20 18 45 45 H 1.09000 * 110.24842 * 316.01744 * 27 26 2 46 46 H 1.08997 * 110.24947 * 77.92827 * 27 26 2 47 47 H 1.08996 * 110.97546 * 92.69985 * 28 27 26 48 48 H 1.09003 * 110.96807 * 216.46640 * 28 27 26 49 49 H 1.08994 * 110.48432 * 143.48136 * 29 28 27 50 50 H 1.09000 * 110.48640 * 265.98822 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5419 -0.6149 1.3127 6 8 4.1450 -0.0204 0.4445 7 7 4.2150 -1.1805 2.3343 8 6 5.6750 -1.0766 2.3962 9 1 6.0048 -0.1006 2.0402 10 6 6.1795 -1.3344 3.8374 11 6 7.0828 -2.5953 3.6850 12 1 7.8160 -2.7587 4.4747 13 6 6.0944 -3.7732 3.4310 14 6 5.5898 -3.5154 1.9899 15 6 6.3421 -2.2169 1.5694 16 1 6.4235 -2.0350 0.4978 17 7 7.6406 -2.3850 2.3060 18 6 8.9344 -2.3552 1.8583 19 1 9.1399 -2.1880 0.8114 20 6 9.9819 -2.5401 2.7503 21 7 9.7315 -2.7434 4.0263 22 14 11.7468 -2.4987 2.1398 23 1 11.7582 -2.2553 0.6750 24 1 12.4836 -1.4090 2.8289 25 1 12.4015 -3.7996 2.4300 26 7 2.0184 -0.6906 -1.1961 27 6 2.8656 -0.0712 -2.2221 28 6 2.7609 -0.9949 -3.4559 29 6 2.4039 -2.3513 -2.8048 30 6 1.7528 -1.9745 -1.4921 31 8 1.0860 -2.7217 -0.8079 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.7517 -1.7715 1.2056 36 1 1.6055 -0.2617 2.1370 37 1 3.7327 -1.6556 3.0289 38 1 6.7618 -0.4863 4.1979 39 1 5.3436 -1.5399 4.5059 40 1 6.6136 -4.7297 3.4908 41 1 5.2682 -3.7411 4.1412 42 1 4.5119 -3.3539 1.9836 43 1 5.8588 -4.3441 1.3349 44 1 10.4635 -2.8729 4.6495 45 1 2.4967 0.9253 -2.4647 46 1 3.8979 -0.0169 -1.8764 47 1 1.9676 -0.6630 -4.1256 48 1 3.7141 -1.0534 -3.9814 49 1 1.7074 -2.9050 -3.4343 50 1 3.3051 -2.9381 -2.6269 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109973606.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:43 Heat of formation + Delta-G solvation = -42.581262 kcal Electronic energy + Delta-G solvation = -30963.050915 eV Core-core repulsion = 26990.583814 eV Total energy + Delta-G solvation = -3972.467102 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.76176 -41.18619 -39.66620 -37.31456 -35.78932 -35.36652 -34.19569 -31.28945 -31.02617 -30.68212 -29.70187 -28.36883 -28.27179 -26.09945 -23.76762 -22.84544 -22.74295 -21.96258 -21.17395 -20.19101 -19.71974 -18.95742 -17.98605 -17.83372 -17.40325 -16.87609 -16.73550 -16.45694 -15.97451 -15.91832 -15.53814 -14.99988 -14.81928 -14.60846 -14.52664 -14.11254 -13.99616 -13.74982 -13.56461 -13.48455 -13.26066 -12.95039 -12.89548 -12.83502 -12.80896 -12.66621 -12.59363 -12.40192 -12.37419 -12.03526 -11.99813 -11.91404 -11.80727 -11.57547 -11.20252 -11.06897 -10.80915 -10.68273 -10.56894 -9.93394 -9.58817 -8.87234 -7.81055 -5.20562 1.45726 1.45870 1.55847 1.64297 1.75370 2.13998 2.25758 2.50233 3.32627 3.45945 3.51206 3.67954 3.75923 3.87997 3.96577 4.07091 4.08400 4.12628 4.20379 4.29256 4.37204 4.41130 4.47299 4.56659 4.58725 4.67422 4.69071 4.72742 4.77803 4.80020 4.85253 4.91097 4.94778 4.99902 5.03415 5.06792 5.12013 5.23381 5.27049 5.29758 5.31431 5.42707 5.54254 5.74310 5.74854 5.87456 6.25271 6.27600 6.68604 7.03912 7.25250 7.38577 7.67511 8.53659 9.26177 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016730 B = 0.003256 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.275562 B = 8596.947399 C = 9260.600258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.166 3.834 3 H 0.099 0.901 4 C -0.153 4.153 5 C 0.508 3.492 6 O -0.570 6.570 7 N -0.705 5.705 8 C 0.151 3.849 9 H 0.055 0.945 10 C -0.125 4.125 11 C 0.139 3.861 12 H 0.121 0.879 13 C -0.126 4.126 14 C -0.115 4.115 15 C 0.123 3.877 16 H 0.064 0.936 17 N -0.618 5.618 18 C -0.224 4.224 19 H 0.071 0.929 20 C -0.063 4.063 21 N -0.944 5.944 22 Si 0.976 3.024 23 H -0.273 1.273 24 H -0.291 1.291 25 H -0.292 1.292 26 N -0.600 5.600 27 C 0.102 3.898 28 C -0.120 4.120 29 C -0.157 4.157 30 C 0.504 3.496 31 O -0.576 6.576 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.134 0.866 37 H 0.410 0.590 38 H 0.047 0.953 39 H 0.094 0.906 40 H 0.033 0.967 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.036 0.964 44 H 0.249 0.751 45 H 0.091 0.909 46 H 0.060 0.940 47 H 0.100 0.900 48 H 0.100 0.900 49 H 0.112 0.888 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.540 6.021 -8.387 22.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.063 3.937 3 H 0.117 0.883 4 C -0.193 4.193 5 C 0.296 3.704 6 O -0.450 6.450 7 N -0.357 5.357 8 C 0.044 3.956 9 H 0.073 0.927 10 C -0.165 4.165 11 C 0.033 3.967 12 H 0.139 0.861 13 C -0.165 4.165 14 C -0.155 4.155 15 C 0.015 3.985 16 H 0.082 0.918 17 N -0.340 5.340 18 C -0.353 4.353 19 H 0.089 0.911 20 C -0.255 4.255 21 N -0.594 5.594 22 Si 0.805 3.195 23 H -0.198 1.198 24 H -0.218 1.218 25 H -0.219 1.219 26 N -0.332 5.332 27 C -0.021 4.021 28 C -0.157 4.157 29 C -0.197 4.197 30 C 0.293 3.707 31 O -0.457 6.457 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.152 0.848 37 H 0.247 0.753 38 H 0.066 0.934 39 H 0.112 0.888 40 H 0.052 0.948 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.110 0.890 46 H 0.078 0.922 47 H 0.118 0.882 48 H 0.118 0.882 49 H 0.130 0.870 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -20.148 6.120 -8.568 22.734 hybrid contribution 1.373 -0.394 0.159 1.437 sum -18.775 5.726 -8.409 21.354 Atomic orbital electron populations 1.22088 0.92818 1.02736 1.03693 1.20822 0.94661 0.96256 0.81981 0.88314 1.22184 0.90556 1.04831 1.01722 1.21105 0.90824 0.77608 0.80857 1.90631 1.71267 1.43960 1.39102 1.46059 1.06595 1.56091 1.26930 1.21997 0.79142 0.97742 0.96729 0.92722 1.23103 0.99450 0.99582 0.94358 1.23682 0.92242 0.91619 0.89206 0.86139 1.22948 0.98716 0.98668 0.96188 1.22770 0.99082 0.96848 0.96750 1.23260 0.85987 0.94843 0.94400 0.91804 1.46740 0.99732 1.82376 1.05123 1.19337 0.82084 1.40610 0.93302 0.91072 1.25415 1.01199 1.03156 0.95771 1.69675 1.30390 1.57040 1.02283 0.85035 0.80127 0.76784 0.77549 1.19782 1.21790 1.21886 1.48357 1.49789 1.11823 1.23237 1.22200 0.94985 0.97891 0.86999 1.22613 1.04577 0.92175 0.96373 1.22370 1.02571 1.00199 0.94557 1.21372 0.79312 0.81763 0.88258 1.90639 1.42271 1.55466 1.57304 0.92955 0.89051 0.91570 0.88450 0.84815 0.75310 0.93386 0.88791 0.94771 0.89729 0.90325 0.94484 0.94127 0.89046 0.92165 0.88164 0.88183 0.87008 0.88639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.20 71.98 0.66 -1.73 16 2 C 0.17 3.19 2.43 44.99 0.11 3.30 16 3 H 0.10 1.83 7.88 -2.39 -0.02 1.81 16 4 C -0.15 -3.06 5.12 29.85 0.15 -2.91 16 5 C 0.51 13.99 7.69 87.66 0.67 14.66 16 6 O -0.57 -19.36 13.38 -3.04 -0.04 -19.40 16 7 N -0.70 -19.27 3.63 -434.91 -1.58 -20.85 16 8 C 0.15 5.52 3.08 46.61 0.14 5.67 16 9 H 0.05 2.30 7.70 -2.39 -0.02 2.28 16 10 C -0.13 -4.63 6.20 32.21 0.20 -4.43 16 11 C 0.14 6.30 4.72 46.23 0.22 6.52 16 12 H 0.12 6.40 5.52 -2.39 -0.01 6.39 16 13 C -0.13 -4.82 6.44 32.21 0.21 -4.61 16 14 C -0.12 -4.29 6.32 32.21 0.20 -4.09 16 15 C 0.12 5.25 5.35 46.23 0.25 5.50 16 16 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 17 N -0.62 -31.65 2.99 -615.24 -1.84 -33.48 16 18 C -0.22 -12.78 10.59 84.03 0.89 -11.89 16 19 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 20 C -0.06 -3.55 5.50 84.86 0.47 -3.08 16 21 N -0.94 -55.10 10.46 21.65 0.23 -54.87 16 22 Si 0.98 46.22 29.55 68.60 2.03 48.25 16 23 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 25 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 26 N -0.60 -13.08 2.20 -794.05 -1.75 -14.83 16 27 C 0.10 1.89 6.82 86.83 0.59 2.48 16 28 C -0.12 -1.63 7.18 31.65 0.23 -1.40 16 29 C -0.16 -2.91 6.86 30.59 0.21 -2.70 16 30 C 0.50 12.66 7.40 87.90 0.65 13.31 16 31 O -0.58 -18.04 15.07 -3.05 -0.05 -18.09 16 32 H 0.05 1.05 6.82 -2.39 -0.02 1.04 16 33 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.10 2.26 6.60 -2.38 -0.02 2.25 16 36 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.41 8.79 8.02 -92.71 -0.74 8.05 16 38 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 39 H 0.09 2.69 7.34 -2.39 -0.02 2.67 16 40 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.08 2.56 7.82 -2.39 -0.02 2.54 16 42 H 0.08 2.49 6.48 -2.39 -0.02 2.47 16 43 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.25 14.09 8.31 -92.70 -0.77 13.32 16 45 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.06 1.49 6.80 -2.39 -0.02 1.47 16 47 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -72.98 384.31 3.06 -69.93 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.20 Total: 28.74 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 5.85 Total: 14.60 kcal Atomic # 7 Polarization: -119.09 SS G_CDS: -4.94 Total: -124.03 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -0.09 Total: -37.49 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -72.98 3.06 -69.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109973606.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.348 kcal (2) G-P(sol) polarization free energy of solvation -72.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds