Wall clock time and date at job start Tue Mar 31 2020 18:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46854 * 2 1 4 4 C 1.50702 * 109.47648 * 119.99657 * 2 1 3 5 5 O 1.21279 * 119.99717 * 119.99839 * 4 2 1 6 6 N 1.34775 * 119.99884 * 300.00933 * 4 2 1 7 7 C 1.46503 * 119.99815 * 179.97438 * 6 4 2 8 8 H 1.09001 * 110.54725 * 36.40948 * 7 6 4 9 9 C 1.54831 * 110.61362 * 273.53957 * 7 6 4 10 10 C 1.55844 * 103.52078 * 241.49603 * 9 7 6 11 11 H 1.08998 * 115.58344 * 159.64965 * 10 9 7 12 12 C 1.55856 * 105.02944 * 288.26868 * 10 9 7 13 13 C 1.54834 * 103.51614 * 71.73205 * 12 10 9 14 14 C 1.55845 * 103.51966 * 359.97438 * 13 12 10 15 15 H 1.09002 * 115.58163 * 159.64891 * 14 13 12 16 16 N 1.50643 * 101.03061 * 32.99178 * 10 9 7 17 17 C 1.46894 * 111.00056 * 62.34837 * 16 10 9 18 18 C 1.50700 * 109.47290 * 69.87544 * 17 16 10 19 19 O 1.21294 * 119.99636 * 359.97438 * 18 17 16 20 20 N 1.34771 * 120.00519 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99980 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00123 * 0.02562 * 21 20 18 23 23 C 1.38955 * 119.99586 * 180.02562 * 21 20 18 24 24 N 1.31410 * 120.00161 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99731 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46935 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47070 * 119.99576 * 25 23 21 28 28 H 1.48497 * 109.46618 * 239.99719 * 25 23 21 29 29 C 1.53002 * 109.47220 * 240.00278 * 2 1 3 30 30 C 1.53002 * 117.49773 * 179.97438 * 29 2 1 31 31 C 1.53000 * 60.02940 * 252.51785 * 30 29 2 32 32 H 1.09000 * 109.46457 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47112 * 299.99794 * 1 2 3 34 34 H 1.08994 * 109.47232 * 60.00386 * 1 2 3 35 35 H 0.96997 * 120.00169 * 359.97438 * 6 4 2 36 36 H 1.09006 * 110.61133 * 0.02562 * 9 7 6 37 37 H 1.09004 * 110.61492 * 122.82331 * 9 7 6 38 38 H 1.09001 * 110.60981 * 190.23700 * 12 10 9 39 39 H 1.08999 * 110.61473 * 313.22157 * 12 10 9 40 40 H 1.08997 * 110.61603 * 118.51219 * 13 12 10 41 41 H 1.09008 * 110.60931 * 241.49243 * 13 12 10 42 42 H 1.09002 * 109.47247 * 189.87795 * 17 16 10 43 43 H 1.08999 * 109.47501 * 309.87881 * 17 16 10 44 44 H 0.97001 * 119.99983 * 0.02562 * 20 18 17 45 45 H 0.97002 * 120.00064 * 180.02562 * 24 23 21 46 46 H 1.09000 * 115.55766 * 325.68191 * 29 2 1 47 47 H 1.09002 * 117.49918 * 145.01819 * 30 29 2 48 48 H 1.09002 * 117.49754 * 0.02562 * 30 29 2 49 49 H 1.09008 * 117.49673 * 107.47884 * 31 30 29 50 50 H 1.08999 * 117.49942 * 252.47315 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7103 1.2305 5 8 2.7297 -1.6964 1.1192 6 7 1.7068 -0.2499 2.4546 7 6 2.1948 -0.9408 3.6507 8 1 3.2041 -1.3192 3.4890 9 6 1.2374 -2.0923 4.0439 10 6 0.7440 -1.6867 5.4655 11 1 -0.1828 -2.1569 5.7940 12 6 1.9748 -1.9021 6.3971 13 6 2.9322 -0.7505 6.0040 14 6 2.1523 0.0064 4.8870 15 1 2.4698 1.0330 4.7043 16 7 0.7307 -0.1849 5.3483 17 6 -0.2204 0.2544 4.3185 18 6 -1.6279 0.0017 4.7940 19 8 -1.8198 -0.4958 5.8835 20 7 -2.6734 0.3286 4.0089 21 6 -3.9538 0.0982 4.4414 22 1 -4.1247 -0.3448 5.4114 23 6 -5.0317 0.4347 3.6316 24 7 -4.8238 0.9742 2.4515 25 14 -6.7764 0.1215 4.2211 26 1 -6.7395 -0.4891 5.5743 27 1 -7.5181 1.4068 4.2775 28 1 -7.4584 -0.8027 3.2799 29 6 2.0400 -0.7212 -1.2493 30 6 3.5551 -0.8275 -1.4346 31 6 2.7421 0.1232 -2.3156 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5137 -0.8900 35 1 1.1493 0.5389 2.5436 36 1 0.3999 -2.1493 3.3485 37 1 1.7720 -3.0416 4.0769 38 1 1.6830 -1.8181 7.4439 39 1 2.4382 -2.8695 6.2033 40 1 3.1151 -0.0957 6.8560 41 1 3.8702 -1.1471 5.6153 42 1 -0.0860 1.3196 4.1305 43 1 -0.0424 -0.3022 3.3984 44 1 -2.5199 0.7261 3.1375 45 1 -5.5763 1.2094 1.8863 46 1 1.4311 -1.5583 -1.5905 47 1 3.9431 -1.7348 -1.8976 48 1 4.1884 -0.3840 -0.6663 49 1 2.8404 1.1923 -2.1268 50 1 2.5956 -0.1584 -3.3584 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110421559.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:46 Heat of formation + Delta-G solvation = -14.267334 kcal Electronic energy + Delta-G solvation = -30769.358814 eV Core-core repulsion = 26798.119497 eV Total energy + Delta-G solvation = -3971.239318 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.38939 -39.64019 -37.85903 -37.06294 -34.39039 -33.96370 -32.39619 -31.93929 -31.14542 -29.62206 -28.53819 -26.50190 -24.82699 -24.15366 -22.66379 -22.39960 -21.10182 -20.63156 -20.18595 -19.47384 -18.79410 -17.82564 -17.29403 -16.59745 -16.09238 -15.66069 -15.53169 -14.99856 -14.88404 -14.72074 -14.46453 -14.16682 -13.81843 -13.72683 -13.30691 -12.87447 -12.71441 -12.48531 -12.29505 -12.07091 -11.99811 -11.84290 -11.77692 -11.62885 -11.49608 -11.40960 -11.30165 -11.18299 -11.11704 -10.94607 -10.57891 -10.51337 -10.36196 -10.25913 -10.24027 -10.17249 -9.53911 -9.52362 -9.03010 -8.56132 -8.10813 -7.97716 -6.44199 -3.84538 2.64516 3.04513 3.14601 3.25530 3.32429 3.79718 3.83310 3.90862 4.18393 4.40903 4.57111 4.65949 4.69180 4.72917 4.77205 4.96782 5.04747 5.06704 5.17072 5.18103 5.20651 5.28162 5.33329 5.39916 5.43213 5.52508 5.55435 5.55625 5.68940 5.72219 5.75698 5.81827 5.84562 5.87665 5.99394 5.99885 6.06609 6.07218 6.17015 6.20773 6.24553 6.27526 6.44616 6.53520 6.83873 7.16644 7.44826 7.53391 8.04101 8.22446 8.59165 9.16357 9.51695 10.03621 10.73595 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009111 B = 0.004194 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3072.490427 B = 6674.722563 C = 9290.177807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 H 0.095 0.905 4 C 0.517 3.483 5 O -0.533 6.533 6 N -0.727 5.727 7 C 0.114 3.886 8 H 0.094 0.906 9 C -0.164 4.164 10 C 0.060 3.940 11 H 0.127 0.873 12 C -0.117 4.117 13 C -0.108 4.108 14 C 0.033 3.967 15 H 0.116 0.884 16 N -0.462 5.462 17 C 0.004 3.996 18 C 0.447 3.553 19 O -0.577 6.577 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.927 3.073 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 C -0.132 4.132 30 C -0.157 4.157 31 C -0.184 4.184 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.402 0.598 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.390 0.610 45 H 0.270 0.730 46 H 0.107 0.893 47 H 0.092 0.908 48 H 0.090 0.910 49 H 0.092 0.908 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.408 -0.152 -5.540 17.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.103 4.103 3 H 0.113 0.887 4 C 0.303 3.697 5 O -0.408 6.408 6 N -0.381 5.381 7 C 0.008 3.992 8 H 0.112 0.888 9 C -0.204 4.204 10 C -0.049 4.049 11 H 0.145 0.855 12 C -0.155 4.155 13 C -0.147 4.147 14 C -0.076 4.076 15 H 0.134 0.866 16 N -0.184 5.184 17 C -0.128 4.128 18 C 0.232 3.768 19 O -0.461 6.461 20 N -0.201 5.201 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.178 4.178 24 N -0.543 5.543 25 Si 0.754 3.246 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 C -0.151 4.151 30 C -0.194 4.194 31 C -0.221 4.221 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.240 0.760 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.089 0.911 44 H 0.223 0.777 45 H 0.080 0.920 46 H 0.125 0.875 47 H 0.110 0.890 48 H 0.108 0.892 49 H 0.111 0.889 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 16.451 -0.799 -4.483 17.070 hybrid contribution -1.031 0.173 -1.218 1.605 sum 15.420 -0.626 -5.700 16.452 Atomic orbital electron populations 1.21765 0.91674 1.03308 1.03325 1.20934 0.98040 0.99688 0.91613 0.88686 1.20718 0.79700 0.84716 0.84562 1.90675 1.37471 1.25926 1.86771 1.46575 1.53774 1.32257 1.05531 1.22820 0.98640 0.93287 0.84467 0.88774 1.23774 0.99219 0.98592 0.98851 1.24501 0.98863 0.88319 0.93191 0.85476 1.22631 0.95036 0.97562 1.00261 1.22499 0.97167 0.97273 0.97725 1.24809 0.91765 0.98482 0.92570 0.86625 1.67508 1.00338 1.12556 1.37971 1.22521 0.93761 1.01151 0.95391 1.19644 0.85396 0.85027 0.86726 1.90513 1.85380 1.48154 1.22044 1.41839 1.05245 1.55188 1.17861 1.19734 0.81125 1.38383 1.03467 0.87926 1.25226 1.00210 0.96992 0.95393 1.69605 1.32484 1.42630 1.09591 0.85834 0.81788 0.78004 0.78941 1.19242 1.20747 1.20792 1.21944 0.95896 1.01503 0.95738 1.22757 0.93664 1.01016 1.01936 1.23098 1.05168 0.97503 0.96309 0.91802 0.91649 0.90956 0.76017 0.90936 0.90582 0.90857 0.91517 0.90647 0.91384 0.89753 0.91083 0.77697 0.91967 0.87514 0.88997 0.89160 0.88920 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.07 37.16 0.34 -1.24 16 2 C -0.08 -0.87 2.88 -91.77 -0.26 -1.13 16 3 H 0.10 0.85 7.90 -51.93 -0.41 0.44 16 4 C 0.52 6.70 7.03 -10.98 -0.08 6.62 16 5 O -0.53 -8.52 14.80 5.56 0.08 -8.43 16 6 N -0.73 -8.67 3.76 -51.43 -0.19 -8.86 16 7 C 0.11 1.42 2.53 -65.47 -0.17 1.25 16 8 H 0.09 1.21 7.36 -51.93 -0.38 0.83 16 9 C -0.16 -2.34 5.49 -24.25 -0.13 -2.47 16 10 C 0.06 0.92 4.25 -62.56 -0.27 0.66 16 11 H 0.13 2.37 6.98 -51.93 -0.36 2.01 16 12 C -0.12 -1.44 6.43 -24.24 -0.16 -1.60 16 13 C -0.11 -1.17 6.44 -24.25 -0.16 -1.33 16 14 C 0.03 0.40 4.64 -62.57 -0.29 0.11 16 15 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 16 N -0.46 -7.31 5.30 -207.02 -1.10 -8.40 16 17 C 0.00 0.07 4.01 -4.98 -0.02 0.05 16 18 C 0.45 10.19 7.58 -10.99 -0.08 10.11 16 19 O -0.58 -15.23 14.46 5.55 0.08 -15.15 16 20 N -0.56 -13.78 5.29 -10.96 -0.06 -13.84 16 21 C -0.30 -8.11 9.68 -14.93 -0.14 -8.25 16 22 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -23.79 13.05 55.50 0.72 -23.07 16 25 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 C -0.13 -1.42 4.73 -90.58 -0.43 -1.85 16 30 C -0.16 -1.64 8.97 -26.73 -0.24 -1.88 16 31 C -0.18 -1.63 10.18 -26.70 -0.27 -1.90 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.73 7.56 -51.93 -0.39 0.33 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.40 4.39 5.68 -40.82 -0.23 4.16 16 36 H 0.07 1.18 7.06 -51.93 -0.37 0.81 16 37 H 0.08 1.02 7.83 -51.93 -0.41 0.62 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.72 7.82 -51.93 -0.41 0.31 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.63 7.82 -51.92 -0.41 0.22 16 42 H 0.08 1.26 8.00 -51.93 -0.42 0.85 16 43 H 0.07 1.10 3.54 -51.93 -0.18 0.92 16 44 H 0.39 9.01 7.90 -40.82 -0.32 8.69 16 45 H 0.27 6.77 8.31 -40.82 -0.34 6.44 16 46 H 0.11 1.20 8.11 -51.93 -0.42 0.77 16 47 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 48 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 49 H 0.09 0.74 8.05 -51.92 -0.42 0.32 16 50 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 389.11 15.07 5.86 5.86 Total: -1.00 -31.64 389.11 -10.09 -41.73 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: -8.02 Total: 16.74 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -2.45 Total: -2.33 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.62 Total: -54.17 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: 0.16 Total: -23.58 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.64 -10.09 -41.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110421559.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.462 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds