Wall clock time and date at job start Tue Mar 31 2020 18:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46854 * 2 1 4 4 C 1.50702 * 109.47648 * 119.99657 * 2 1 3 5 5 O 1.21279 * 119.99717 * 119.99839 * 4 2 1 6 6 N 1.34775 * 119.99884 * 300.00933 * 4 2 1 7 7 C 1.46503 * 119.99815 * 179.97438 * 6 4 2 8 8 H 1.09001 * 110.54725 * 36.40948 * 7 6 4 9 9 C 1.54831 * 110.61362 * 273.53957 * 7 6 4 10 10 C 1.55844 * 103.52078 * 241.49603 * 9 7 6 11 11 H 1.08998 * 115.58344 * 159.64965 * 10 9 7 12 12 C 1.55856 * 105.02944 * 288.26868 * 10 9 7 13 13 C 1.54834 * 103.51614 * 71.73205 * 12 10 9 14 14 C 1.55845 * 103.51966 * 359.97438 * 13 12 10 15 15 H 1.09002 * 115.58163 * 159.64891 * 14 13 12 16 16 N 1.50643 * 101.03061 * 32.99178 * 10 9 7 17 17 C 1.46894 * 111.00056 * 62.34837 * 16 10 9 18 18 C 1.50700 * 109.47290 * 69.87544 * 17 16 10 19 19 O 1.21294 * 119.99636 * 359.97438 * 18 17 16 20 20 N 1.34771 * 120.00519 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99980 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00123 * 0.02562 * 21 20 18 23 23 C 1.38955 * 119.99586 * 180.02562 * 21 20 18 24 24 N 1.31410 * 120.00161 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99731 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46935 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47070 * 119.99576 * 25 23 21 28 28 H 1.48497 * 109.46618 * 239.99719 * 25 23 21 29 29 C 1.53002 * 109.47220 * 240.00278 * 2 1 3 30 30 C 1.53002 * 117.49773 * 179.97438 * 29 2 1 31 31 C 1.53000 * 60.02940 * 252.51785 * 30 29 2 32 32 H 1.09000 * 109.46457 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47112 * 299.99794 * 1 2 3 34 34 H 1.08994 * 109.47232 * 60.00386 * 1 2 3 35 35 H 0.96997 * 120.00169 * 359.97438 * 6 4 2 36 36 H 1.09006 * 110.61133 * 0.02562 * 9 7 6 37 37 H 1.09004 * 110.61492 * 122.82331 * 9 7 6 38 38 H 1.09001 * 110.60981 * 190.23700 * 12 10 9 39 39 H 1.08999 * 110.61473 * 313.22157 * 12 10 9 40 40 H 1.08997 * 110.61603 * 118.51219 * 13 12 10 41 41 H 1.09008 * 110.60931 * 241.49243 * 13 12 10 42 42 H 1.09002 * 109.47247 * 189.87795 * 17 16 10 43 43 H 1.08999 * 109.47501 * 309.87881 * 17 16 10 44 44 H 0.97001 * 119.99983 * 0.02562 * 20 18 17 45 45 H 0.97002 * 120.00064 * 180.02562 * 24 23 21 46 46 H 1.09000 * 115.55766 * 325.68191 * 29 2 1 47 47 H 1.09002 * 117.49918 * 145.01819 * 30 29 2 48 48 H 1.09002 * 117.49754 * 0.02562 * 30 29 2 49 49 H 1.09008 * 117.49673 * 107.47884 * 31 30 29 50 50 H 1.08999 * 117.49942 * 252.47315 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7103 1.2305 5 8 2.7297 -1.6964 1.1192 6 7 1.7068 -0.2499 2.4546 7 6 2.1948 -0.9408 3.6507 8 1 3.2041 -1.3192 3.4890 9 6 1.2374 -2.0923 4.0439 10 6 0.7440 -1.6867 5.4655 11 1 -0.1828 -2.1569 5.7940 12 6 1.9748 -1.9021 6.3971 13 6 2.9322 -0.7505 6.0040 14 6 2.1523 0.0064 4.8870 15 1 2.4698 1.0330 4.7043 16 7 0.7307 -0.1849 5.3483 17 6 -0.2204 0.2544 4.3185 18 6 -1.6279 0.0017 4.7940 19 8 -1.8198 -0.4958 5.8835 20 7 -2.6734 0.3286 4.0089 21 6 -3.9538 0.0982 4.4414 22 1 -4.1247 -0.3448 5.4114 23 6 -5.0317 0.4347 3.6316 24 7 -4.8238 0.9742 2.4515 25 14 -6.7764 0.1215 4.2211 26 1 -6.7395 -0.4891 5.5743 27 1 -7.5181 1.4068 4.2775 28 1 -7.4584 -0.8027 3.2799 29 6 2.0400 -0.7212 -1.2493 30 6 3.5551 -0.8275 -1.4346 31 6 2.7421 0.1232 -2.3156 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5137 -0.8900 35 1 1.1493 0.5389 2.5436 36 1 0.3999 -2.1493 3.3485 37 1 1.7720 -3.0416 4.0769 38 1 1.6830 -1.8181 7.4439 39 1 2.4382 -2.8695 6.2033 40 1 3.1151 -0.0957 6.8560 41 1 3.8702 -1.1471 5.6153 42 1 -0.0860 1.3196 4.1305 43 1 -0.0424 -0.3022 3.3984 44 1 -2.5199 0.7261 3.1375 45 1 -5.5763 1.2094 1.8863 46 1 1.4311 -1.5583 -1.5905 47 1 3.9431 -1.7348 -1.8976 48 1 4.1884 -0.3840 -0.6663 49 1 2.8404 1.1923 -2.1268 50 1 2.5956 -0.1584 -3.3584 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110421559.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:46 Heat of formation + Delta-G solvation = -35.807563 kcal Electronic energy + Delta-G solvation = -30770.292869 eV Core-core repulsion = 26798.119497 eV Total energy + Delta-G solvation = -3972.173372 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.51793 -40.67787 -39.67404 -37.93304 -35.96152 -35.43247 -33.45582 -33.25582 -32.93461 -30.71490 -29.59223 -28.08711 -26.03935 -25.60546 -23.61498 -23.14955 -22.08352 -21.76306 -21.54389 -20.47512 -20.38567 -19.70620 -18.32831 -17.67543 -17.48825 -17.00621 -16.60963 -16.43855 -16.22935 -15.83351 -15.65925 -15.59862 -15.30189 -14.86542 -14.60258 -14.37606 -13.73980 -13.58575 -13.55650 -13.34888 -13.25356 -13.08653 -12.99682 -12.83286 -12.71208 -12.56831 -12.39418 -12.34652 -12.32507 -12.13156 -12.08709 -11.98209 -11.70510 -11.47695 -11.36399 -11.23953 -10.96558 -10.53139 -10.31608 -10.08764 -9.98657 -9.47456 -8.45930 -5.93470 1.35519 1.41309 1.54389 1.62586 2.06251 2.09726 2.28117 2.70588 2.99873 3.20318 3.26379 3.58652 3.59736 3.66812 3.73102 3.85285 3.93262 4.07766 4.15054 4.18894 4.19841 4.25663 4.30295 4.36011 4.40223 4.48090 4.51505 4.53478 4.57652 4.70650 4.74451 4.83324 4.85685 4.93293 4.97218 5.06003 5.07954 5.19264 5.20576 5.25096 5.29063 5.31558 5.35533 5.42159 5.48148 5.70965 5.85726 6.07933 6.46827 6.61991 7.14737 7.22386 7.57645 8.14249 8.71397 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009111 B = 0.004194 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3072.490427 B = 6674.722563 C = 9290.177807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.073 4.073 3 H 0.120 0.880 4 C 0.514 3.486 5 O -0.565 6.565 6 N -0.721 5.721 7 C 0.122 3.878 8 H 0.100 0.900 9 C -0.157 4.157 10 C 0.048 3.952 11 H 0.084 0.916 12 C -0.111 4.111 13 C -0.101 4.101 14 C 0.043 3.957 15 H 0.142 0.858 16 N -0.483 5.483 17 C 0.019 3.981 18 C 0.442 3.558 19 O -0.618 6.618 20 N -0.572 5.572 21 C -0.332 4.332 22 H 0.075 0.925 23 C -0.008 4.008 24 N -0.916 5.916 25 Si 0.986 3.014 26 H -0.276 1.276 27 H -0.270 1.270 28 H -0.272 1.272 29 C -0.150 4.150 30 C -0.166 4.166 31 C -0.161 4.161 32 H 0.043 0.957 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.409 0.591 36 H 0.044 0.956 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.111 0.889 43 H 0.085 0.915 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.095 0.905 47 H 0.088 0.912 48 H 0.084 0.916 49 H 0.108 0.892 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.903 1.387 -6.531 19.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.094 4.094 3 H 0.138 0.862 4 C 0.302 3.698 5 O -0.443 6.443 6 N -0.375 5.375 7 C 0.015 3.985 8 H 0.118 0.882 9 C -0.197 4.197 10 C -0.060 4.060 11 H 0.102 0.898 12 C -0.149 4.149 13 C -0.139 4.139 14 C -0.065 4.065 15 H 0.160 0.840 16 N -0.205 5.205 17 C -0.113 4.113 18 C 0.230 3.770 19 O -0.504 6.504 20 N -0.209 5.209 21 C -0.461 4.461 22 H 0.093 0.907 23 C -0.208 4.208 24 N -0.556 5.556 25 Si 0.811 3.189 26 H -0.201 1.201 27 H -0.195 1.195 28 H -0.197 1.197 29 C -0.169 4.169 30 C -0.203 4.203 31 C -0.198 4.198 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.247 0.753 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.129 0.871 43 H 0.102 0.898 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.113 0.887 47 H 0.107 0.893 48 H 0.102 0.898 49 H 0.126 0.874 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 17.953 0.767 -5.493 18.791 hybrid contribution -1.495 -0.364 -0.886 1.776 sum 16.459 0.402 -6.380 17.656 Atomic orbital electron populations 1.21748 0.92044 1.02172 1.03907 1.20924 0.97483 1.00625 0.90403 0.86208 1.21162 0.79041 0.84285 0.85307 1.90661 1.39064 1.27356 1.87225 1.46527 1.53495 1.32231 1.05275 1.22743 0.98119 0.92740 0.84871 0.88199 1.23685 0.98704 0.99972 0.97387 1.24343 0.98513 0.88352 0.94840 0.89832 1.22607 0.93974 0.99419 0.98937 1.22536 0.97343 0.96418 0.97640 1.24981 0.89213 0.99907 0.92411 0.84026 1.67502 1.02292 1.12624 1.38126 1.22396 0.90088 1.02955 0.95857 1.20722 0.87399 0.83081 0.85836 1.90486 1.86509 1.49474 1.23915 1.41871 1.04970 1.55781 1.18311 1.19629 0.83077 1.40268 1.03154 0.90725 1.25915 1.03236 0.96268 0.95399 1.69650 1.33729 1.42335 1.09931 0.84966 0.77542 0.78320 0.78103 1.20113 1.19492 1.19744 1.21962 0.95949 1.02190 0.96753 1.22741 0.93327 1.01689 1.02590 1.23183 1.02420 0.97886 0.96263 0.93800 0.91826 0.89591 0.75264 0.93729 0.89943 0.91700 0.89851 0.89679 0.88855 0.87078 0.89806 0.77044 0.91341 0.88722 0.89320 0.89768 0.87384 0.87700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.07 71.98 0.65 -2.31 16 2 C -0.07 -1.44 2.88 -11.54 -0.03 -1.47 16 3 H 0.12 1.77 7.90 -2.39 -0.02 1.76 16 4 C 0.51 12.70 7.03 87.66 0.62 13.31 16 5 O -0.56 -17.67 14.80 -3.03 -0.04 -17.72 16 6 N -0.72 -15.92 3.76 -435.02 -1.64 -17.56 16 7 C 0.12 2.79 2.53 46.58 0.12 2.91 16 8 H 0.10 2.29 7.36 -2.39 -0.02 2.27 16 9 C -0.16 -4.47 5.49 32.20 0.18 -4.29 16 10 C 0.05 1.52 4.25 46.15 0.20 1.72 16 11 H 0.08 3.37 6.98 -2.39 -0.02 3.35 16 12 C -0.11 -2.63 6.43 32.21 0.21 -2.42 16 13 C -0.10 -1.88 6.44 32.20 0.21 -1.67 16 14 C 0.04 0.92 4.64 46.12 0.21 1.14 16 15 H 0.14 2.35 8.14 -2.39 -0.02 2.33 16 16 N -0.48 -14.91 5.30 -808.88 -4.29 -19.20 16 17 C 0.02 0.63 4.01 85.56 0.34 0.97 16 18 C 0.44 20.79 7.58 87.66 0.66 21.45 16 19 O -0.62 -34.18 14.46 -3.07 -0.04 -34.22 16 20 N -0.57 -28.69 5.29 -306.99 -1.62 -30.31 16 21 C -0.33 -18.67 9.68 84.04 0.81 -17.86 16 22 H 0.07 4.55 7.16 -2.91 -0.02 4.53 16 23 C -0.01 -0.42 5.50 84.93 0.47 0.04 16 24 N -0.92 -48.03 13.05 21.66 0.28 -47.75 16 25 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 26 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 28 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 29 C -0.15 -3.03 4.73 -10.77 -0.05 -3.08 16 30 C -0.17 -3.28 8.97 30.60 0.27 -3.00 16 31 C -0.16 -2.45 10.18 30.62 0.31 -2.13 16 32 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 1.34 7.56 -2.39 -0.02 1.32 16 34 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.41 7.98 5.68 -92.71 -0.53 7.45 16 36 H 0.04 1.50 7.06 -2.38 -0.02 1.48 16 37 H 0.08 2.20 7.83 -2.39 -0.02 2.18 16 38 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.08 1.67 7.82 -2.39 -0.02 1.65 16 40 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.09 1.33 7.82 -2.38 -0.02 1.31 16 42 H 0.11 3.09 8.00 -2.39 -0.02 3.07 16 43 H 0.08 2.58 3.54 -2.39 -0.01 2.57 16 44 H 0.40 18.56 7.90 -92.71 -0.73 17.83 16 45 H 0.28 13.61 8.31 -92.71 -0.77 12.84 16 46 H 0.09 2.11 8.11 -2.39 -0.02 2.09 16 47 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.08 1.75 8.10 -2.39 -0.02 1.73 16 49 H 0.11 1.34 8.05 -2.38 -0.02 1.32 16 50 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -71.00 389.11 -0.44 -71.45 By element: Atomic # 1 Polarization: 47.55 SS G_CDS: -0.29 Total: 47.25 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 5.18 Total: 3.31 kcal Atomic # 7 Polarization: -107.56 SS G_CDS: -7.26 Total: -114.82 kcal Atomic # 8 Polarization: -51.85 SS G_CDS: -0.09 Total: -51.94 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -71.00 -0.44 -71.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110421559.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.638 kcal (2) G-P(sol) polarization free energy of solvation -71.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds