Wall clock time and date at job start Tue Mar 31 2020 19:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47761 * 2 1 4 4 C 1.52996 * 109.47122 * 120.00570 * 2 1 3 5 5 C 1.50705 * 109.47007 * 184.99730 * 4 2 1 6 6 O 1.21276 * 119.99888 * 359.97438 * 5 4 2 7 7 N 1.34781 * 119.99721 * 179.97438 * 5 4 2 8 8 C 1.46495 * 119.99831 * 180.02562 * 7 5 4 9 9 H 1.08998 * 110.56181 * 32.09387 * 8 7 5 10 10 C 1.54852 * 110.62283 * 269.02426 * 8 7 5 11 11 C 1.55845 * 103.44534 * 241.50946 * 10 8 7 12 12 H 1.09004 * 115.55919 * 159.56517 * 11 10 8 13 13 C 1.55841 * 105.06319 * 288.17262 * 11 10 8 14 14 C 1.54852 * 103.44329 * 71.82588 * 13 11 10 15 15 C 1.55841 * 103.44619 * 359.97438 * 14 13 11 16 16 H 1.09006 * 115.56149 * 159.56990 * 15 14 13 17 17 N 1.50231 * 101.05223 * 32.93799 * 15 14 13 18 18 C 1.36937 * 130.84175 * 125.99310 * 17 15 14 19 19 H 1.08001 * 120.00455 * 171.61490 * 18 17 15 20 20 C 1.38818 * 119.99835 * 351.62134 * 18 17 15 21 21 N 1.31617 * 119.99749 * 158.09384 * 20 18 17 22 22 Si 1.86796 * 119.99780 * 338.09777 * 20 18 17 23 23 H 1.48506 * 109.47322 * 92.88114 * 22 20 18 24 24 H 1.48502 * 109.46901 * 212.87739 * 22 20 18 25 25 H 1.48495 * 109.47466 * 332.87898 * 22 20 18 26 26 N 1.46499 * 109.46868 * 240.00080 * 2 1 3 27 27 C 1.46767 * 124.35105 * 120.00076 * 26 2 1 28 28 C 1.54476 * 105.47451 * 197.01699 * 27 26 2 29 29 C 1.54624 * 101.76736 * 334.58418 * 28 27 26 30 30 C 1.34424 * 124.35166 * 299.70119 * 26 2 1 31 31 O 1.21280 * 124.93828 * 359.57853 * 30 26 2 32 32 H 1.09002 * 109.46934 * 300.00072 * 1 2 3 33 33 H 1.09002 * 109.47345 * 59.99410 * 1 2 3 34 34 H 1.08995 * 109.47761 * 180.02562 * 1 2 3 35 35 H 1.09000 * 109.47055 * 304.99597 * 4 2 1 36 36 H 1.08997 * 109.47738 * 64.99735 * 4 2 1 37 37 H 0.96999 * 119.99880 * 359.97438 * 7 5 4 38 38 H 1.09000 * 110.63041 * 359.97438 * 10 8 7 39 39 H 1.09006 * 110.62689 * 123.02109 * 10 8 7 40 40 H 1.08999 * 110.62930 * 313.33594 * 13 11 10 41 41 H 1.09005 * 110.76392 * 190.37781 * 13 11 10 42 42 H 1.08999 * 110.62817 * 241.50802 * 14 13 11 43 43 H 1.09001 * 110.76769 * 118.55557 * 14 13 11 44 44 H 0.97005 * 120.00001 * 179.97438 * 21 20 18 45 45 H 1.09003 * 110.24577 * 316.02055 * 27 26 2 46 46 H 1.09004 * 110.24329 * 77.92832 * 27 26 2 47 47 H 1.09004 * 110.96832 * 92.70533 * 28 27 26 48 48 H 1.09005 * 110.97234 * 216.42652 * 28 27 26 49 49 H 1.08998 * 110.48652 * 143.47698 * 29 28 27 50 50 H 1.09006 * 110.48951 * 265.98819 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5419 -0.6151 1.3126 6 8 4.1450 -0.0213 0.4439 7 7 4.2149 -1.1799 2.3347 8 6 5.6748 -1.0761 2.3966 9 1 6.0106 -0.1353 1.9605 10 6 6.3380 -2.2796 1.6827 11 6 7.1462 -2.9749 2.8194 12 1 7.4089 -4.0174 2.6397 13 6 8.3436 -2.0198 3.1074 14 6 7.6804 -0.8163 3.8214 15 6 6.1727 -1.2078 3.8669 16 1 5.5739 -0.6873 4.6144 17 7 6.2668 -2.7007 4.0058 18 6 5.7203 -3.5504 4.9302 19 1 5.7900 -4.6189 4.7894 20 6 5.0764 -3.0382 6.0484 21 7 4.1993 -3.7743 6.6974 22 14 5.4548 -1.3045 6.6316 23 1 4.4882 -0.3554 6.0232 24 1 5.3428 -1.2446 8.1112 25 1 6.8342 -0.9351 6.2243 26 7 2.0182 -0.6906 -1.1962 27 6 2.8655 -0.0712 -2.2222 28 6 2.7607 -0.9950 -3.4559 29 6 2.4037 -2.3513 -2.8049 30 6 1.7526 -1.9746 -1.4923 31 8 1.0857 -2.7216 -0.8080 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0276 0.0005 35 1 1.6054 -0.2619 2.1369 36 1 1.7516 -1.7716 1.2055 37 1 3.7324 -1.6545 3.0295 38 1 5.5806 -2.9539 1.2829 39 1 7.0050 -1.9369 0.8916 40 1 8.8142 -1.7025 2.1769 41 1 9.0723 -2.4999 3.7607 42 1 7.8221 0.0978 3.2449 43 1 8.0775 -0.6984 4.8296 44 1 3.7496 -3.4166 7.4789 45 1 2.4967 0.9254 -2.4647 46 1 3.8978 -0.0170 -1.8765 47 1 1.9674 -0.6628 -4.1256 48 1 3.7137 -1.0529 -3.9819 49 1 1.7071 -2.9049 -3.4344 50 1 3.3049 -2.9381 -2.6271 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111273403.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:51 Heat of formation + Delta-G solvation = -17.894131 kcal Electronic energy + Delta-G solvation = -31091.669035 eV Core-core repulsion = 27120.272448 eV Total energy + Delta-G solvation = -3971.396587 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.68292 -39.91355 -38.52643 -36.30967 -34.88839 -33.76057 -32.61616 -30.30650 -29.70907 -29.35304 -28.82146 -27.53846 -27.21752 -24.04520 -22.90025 -21.99810 -21.61656 -20.27773 -19.98545 -18.99212 -18.72356 -17.11782 -16.95252 -16.90481 -16.51495 -16.17485 -15.31190 -14.96259 -14.64783 -14.34904 -13.98332 -13.88375 -13.71956 -13.59763 -13.44350 -13.25585 -12.93966 -12.77012 -12.64275 -12.31241 -12.09741 -11.98008 -11.82629 -11.63342 -11.47302 -11.42327 -11.19540 -11.14803 -11.09186 -11.05866 -10.90756 -10.40254 -10.27349 -9.91791 -9.69873 -9.56463 -9.33927 -9.31093 -8.94099 -8.64765 -8.51634 -7.30231 -5.97500 -3.23082 2.65339 2.95594 3.03834 3.22408 3.40321 3.43360 3.59087 4.31051 4.40372 4.46555 4.59551 4.70326 4.79205 4.86402 4.99589 5.10434 5.14975 5.31060 5.32698 5.37451 5.42942 5.50720 5.52589 5.57325 5.60955 5.63668 5.67140 5.68682 5.68966 5.79124 5.87194 5.90128 5.95383 5.98279 6.02925 6.10501 6.16837 6.21102 6.39870 6.47147 6.63610 6.65287 6.74305 6.84183 7.05481 7.21327 7.31674 7.99417 8.24724 8.25955 8.61176 8.66876 9.59073 10.19000 11.18742 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014718 B = 0.003791 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.010298 B = 7384.867858 C = 8049.545470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.176 3.824 3 H 0.094 0.906 4 C -0.165 4.165 5 C 0.515 3.485 6 O -0.555 6.555 7 N -0.709 5.709 8 C 0.133 3.867 9 H 0.084 0.916 10 C -0.135 4.135 11 C 0.141 3.859 12 H 0.096 0.904 13 C -0.132 4.132 14 C -0.135 4.135 15 C 0.115 3.885 16 H 0.094 0.906 17 N -0.604 5.604 18 C -0.225 4.225 19 H 0.098 0.902 20 C 0.016 3.984 21 N -0.911 5.911 22 Si 0.867 3.133 23 H -0.291 1.291 24 H -0.304 1.304 25 H -0.261 1.261 26 N -0.601 5.601 27 C 0.107 3.893 28 C -0.132 4.132 29 C -0.156 4.156 30 C 0.514 3.486 31 O -0.535 6.535 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.408 0.592 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.262 0.738 45 H 0.071 0.929 46 H 0.086 0.914 47 H 0.077 0.923 48 H 0.087 0.913 49 H 0.097 0.903 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.726 9.506 -18.232 20.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.073 3.927 3 H 0.112 0.888 4 C -0.206 4.206 5 C 0.302 3.698 6 O -0.435 6.435 7 N -0.358 5.358 8 C 0.027 3.973 9 H 0.102 0.898 10 C -0.176 4.176 11 C 0.034 3.966 12 H 0.114 0.886 13 C -0.172 4.172 14 C -0.174 4.174 15 C 0.008 3.992 16 H 0.111 0.889 17 N -0.327 5.327 18 C -0.351 4.351 19 H 0.116 0.884 20 C -0.181 4.181 21 N -0.555 5.555 22 Si 0.700 3.300 23 H -0.220 1.220 24 H -0.233 1.233 25 H -0.186 1.186 26 N -0.334 5.334 27 C -0.016 4.016 28 C -0.170 4.170 29 C -0.196 4.196 30 C 0.302 3.698 31 O -0.412 6.412 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.119 0.881 36 H 0.127 0.873 37 H 0.243 0.757 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.089 0.911 46 H 0.104 0.896 47 H 0.096 0.904 48 H 0.106 0.894 49 H 0.115 0.885 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.855 9.403 -18.107 20.487 hybrid contribution 0.013 0.791 1.009 1.282 sum -1.841 10.194 -17.098 19.992 Atomic orbital electron populations 1.22182 0.94388 1.03796 1.02130 1.20610 0.93507 0.96142 0.82410 0.88830 1.22199 0.93371 1.05281 0.99763 1.20474 0.89621 0.78250 0.81456 1.90566 1.70503 1.43788 1.38606 1.46067 1.08078 1.55387 1.26299 1.22449 0.79087 0.98079 0.97729 0.89793 1.23341 0.99439 0.97334 0.97462 1.22935 0.89519 0.96799 0.87391 0.88647 1.22989 0.98152 0.96962 0.99073 1.23059 0.96555 0.97197 1.00630 1.23345 0.95038 0.87337 0.93513 0.88858 1.46867 1.55923 1.00608 1.29275 1.18668 1.28093 0.89585 0.98749 0.88424 1.24705 0.98415 0.97104 0.97901 1.69830 1.26283 1.37629 1.21766 0.87171 0.79575 0.85943 0.77314 1.21978 1.23254 1.18619 1.48188 1.50411 1.12019 1.22815 1.22101 0.96582 0.96357 0.86602 1.22597 1.03039 0.94280 0.97094 1.22314 1.02792 0.98845 0.95633 1.20852 0.79808 0.81640 0.87494 1.90702 1.40267 1.54429 1.55822 0.91281 0.92310 0.90850 0.88052 0.87259 0.75671 0.91789 0.91977 0.92415 0.92151 0.92366 0.91364 0.92776 0.91063 0.89557 0.90422 0.89425 0.88454 0.88041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 9.20 37.16 0.34 -1.42 16 2 C 0.18 2.13 2.43 -67.93 -0.17 1.96 16 3 H 0.09 1.07 7.88 -51.93 -0.41 0.66 16 4 C -0.17 -2.30 5.12 -27.88 -0.14 -2.45 16 5 C 0.52 8.46 7.69 -10.98 -0.08 8.37 16 6 O -0.56 -9.61 13.29 5.56 0.07 -9.54 16 7 N -0.71 -12.69 5.07 -51.43 -0.26 -12.95 16 8 C 0.13 2.41 2.80 -65.47 -0.18 2.23 16 9 H 0.08 1.49 7.23 -51.93 -0.38 1.11 16 10 C -0.14 -2.34 6.23 -24.24 -0.15 -2.49 16 11 C 0.14 2.61 5.48 -62.82 -0.34 2.26 16 12 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 13 C -0.13 -2.18 6.44 -24.24 -0.16 -2.34 16 14 C -0.13 -2.40 6.21 -24.24 -0.15 -2.55 16 15 C 0.11 2.33 3.14 -62.84 -0.20 2.14 16 16 H 0.09 2.07 3.49 -51.93 -0.18 1.89 16 17 N -0.60 -13.61 2.84 -145.89 -0.42 -14.02 16 18 C -0.22 -6.04 10.94 -15.06 -0.16 -6.21 16 19 H 0.10 2.82 8.06 -52.49 -0.42 2.40 16 20 C 0.02 0.46 5.49 -17.43 -0.10 0.36 16 21 N -0.91 -27.29 13.97 55.49 0.78 -26.52 16 22 Si 0.87 21.36 24.62 -169.99 -4.18 17.18 16 23 H -0.29 -6.99 6.75 56.52 0.38 -6.61 16 24 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 25 H -0.26 -6.10 4.84 56.52 0.27 -5.83 16 26 N -0.60 -7.37 2.20 -164.84 -0.36 -7.74 16 27 C 0.11 1.04 6.82 -3.12 -0.02 1.02 16 28 C -0.13 -0.99 7.18 -25.10 -0.18 -1.17 16 29 C -0.16 -1.53 6.86 -26.74 -0.18 -1.72 16 30 C 0.51 7.10 7.40 -10.86 -0.08 7.02 16 31 O -0.53 -9.31 15.07 5.56 0.08 -9.22 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.93 6.82 -51.93 -0.35 0.58 16 35 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.11 1.73 6.60 -51.93 -0.34 1.39 16 37 H 0.41 7.81 8.66 -40.82 -0.35 7.46 16 38 H 0.06 1.19 7.98 -51.93 -0.41 0.77 16 39 H 0.06 0.96 7.82 -51.93 -0.41 0.55 16 40 H 0.06 0.81 7.82 -51.93 -0.41 0.40 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 0.89 7.82 -51.93 -0.41 0.49 16 43 H 0.07 1.29 6.58 -51.93 -0.34 0.95 16 44 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.09 1.01 6.80 -51.93 -0.35 0.66 16 47 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 378.46 15.07 5.70 5.70 Total: -1.00 -32.29 378.46 -8.82 -41.11 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -8.28 Total: 10.96 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -1.96 Total: 5.04 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: -0.26 Total: -61.23 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.16 Total: -18.76 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.18 Total: 17.18 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.29 -8.82 -41.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111273403.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.216 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds