Wall clock time and date at job start Tue Mar 31 2020 19:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47761 * 2 1 4 4 C 1.52996 * 109.47122 * 120.00570 * 2 1 3 5 5 C 1.50705 * 109.47007 * 184.99730 * 4 2 1 6 6 O 1.21276 * 119.99888 * 359.97438 * 5 4 2 7 7 N 1.34781 * 119.99721 * 179.97438 * 5 4 2 8 8 C 1.46495 * 119.99831 * 180.02562 * 7 5 4 9 9 H 1.08998 * 110.56181 * 32.09387 * 8 7 5 10 10 C 1.54852 * 110.62283 * 269.02426 * 8 7 5 11 11 C 1.55845 * 103.44534 * 241.50946 * 10 8 7 12 12 H 1.09004 * 115.55919 * 159.56517 * 11 10 8 13 13 C 1.55841 * 105.06319 * 288.17262 * 11 10 8 14 14 C 1.54852 * 103.44329 * 71.82588 * 13 11 10 15 15 C 1.55841 * 103.44619 * 359.97438 * 14 13 11 16 16 H 1.09006 * 115.56149 * 159.56990 * 15 14 13 17 17 N 1.50231 * 101.05223 * 32.93799 * 15 14 13 18 18 C 1.36937 * 130.84175 * 125.99310 * 17 15 14 19 19 H 1.08001 * 120.00455 * 171.61490 * 18 17 15 20 20 C 1.38818 * 119.99835 * 351.62134 * 18 17 15 21 21 N 1.31617 * 119.99749 * 158.09384 * 20 18 17 22 22 Si 1.86796 * 119.99780 * 338.09777 * 20 18 17 23 23 H 1.48506 * 109.47322 * 92.88114 * 22 20 18 24 24 H 1.48502 * 109.46901 * 212.87739 * 22 20 18 25 25 H 1.48495 * 109.47466 * 332.87898 * 22 20 18 26 26 N 1.46499 * 109.46868 * 240.00080 * 2 1 3 27 27 C 1.46767 * 124.35105 * 120.00076 * 26 2 1 28 28 C 1.54476 * 105.47451 * 197.01699 * 27 26 2 29 29 C 1.54624 * 101.76736 * 334.58418 * 28 27 26 30 30 C 1.34424 * 124.35166 * 299.70119 * 26 2 1 31 31 O 1.21280 * 124.93828 * 359.57853 * 30 26 2 32 32 H 1.09002 * 109.46934 * 300.00072 * 1 2 3 33 33 H 1.09002 * 109.47345 * 59.99410 * 1 2 3 34 34 H 1.08995 * 109.47761 * 180.02562 * 1 2 3 35 35 H 1.09000 * 109.47055 * 304.99597 * 4 2 1 36 36 H 1.08997 * 109.47738 * 64.99735 * 4 2 1 37 37 H 0.96999 * 119.99880 * 359.97438 * 7 5 4 38 38 H 1.09000 * 110.63041 * 359.97438 * 10 8 7 39 39 H 1.09006 * 110.62689 * 123.02109 * 10 8 7 40 40 H 1.08999 * 110.62930 * 313.33594 * 13 11 10 41 41 H 1.09005 * 110.76392 * 190.37781 * 13 11 10 42 42 H 1.08999 * 110.62817 * 241.50802 * 14 13 11 43 43 H 1.09001 * 110.76769 * 118.55557 * 14 13 11 44 44 H 0.97005 * 120.00001 * 179.97438 * 21 20 18 45 45 H 1.09003 * 110.24577 * 316.02055 * 27 26 2 46 46 H 1.09004 * 110.24329 * 77.92832 * 27 26 2 47 47 H 1.09004 * 110.96832 * 92.70533 * 28 27 26 48 48 H 1.09005 * 110.97234 * 216.42652 * 28 27 26 49 49 H 1.08998 * 110.48652 * 143.47698 * 29 28 27 50 50 H 1.09006 * 110.48951 * 265.98819 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5419 -0.6151 1.3126 6 8 4.1450 -0.0213 0.4439 7 7 4.2149 -1.1799 2.3347 8 6 5.6748 -1.0761 2.3966 9 1 6.0106 -0.1353 1.9605 10 6 6.3380 -2.2796 1.6827 11 6 7.1462 -2.9749 2.8194 12 1 7.4089 -4.0174 2.6397 13 6 8.3436 -2.0198 3.1074 14 6 7.6804 -0.8163 3.8214 15 6 6.1727 -1.2078 3.8669 16 1 5.5739 -0.6873 4.6144 17 7 6.2668 -2.7007 4.0058 18 6 5.7203 -3.5504 4.9302 19 1 5.7900 -4.6189 4.7894 20 6 5.0764 -3.0382 6.0484 21 7 4.1993 -3.7743 6.6974 22 14 5.4548 -1.3045 6.6316 23 1 4.4882 -0.3554 6.0232 24 1 5.3428 -1.2446 8.1112 25 1 6.8342 -0.9351 6.2243 26 7 2.0182 -0.6906 -1.1962 27 6 2.8655 -0.0712 -2.2222 28 6 2.7607 -0.9950 -3.4559 29 6 2.4037 -2.3513 -2.8049 30 6 1.7526 -1.9746 -1.4923 31 8 1.0857 -2.7216 -0.8080 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0276 0.0005 35 1 1.6054 -0.2619 2.1369 36 1 1.7516 -1.7716 1.2055 37 1 3.7324 -1.6545 3.0295 38 1 5.5806 -2.9539 1.2829 39 1 7.0050 -1.9369 0.8916 40 1 8.8142 -1.7025 2.1769 41 1 9.0723 -2.4999 3.7607 42 1 7.8221 0.0978 3.2449 43 1 8.0775 -0.6984 4.8296 44 1 3.7496 -3.4166 7.4789 45 1 2.4967 0.9254 -2.4647 46 1 3.8978 -0.0170 -1.8765 47 1 1.9674 -0.6628 -4.1256 48 1 3.7137 -1.0529 -3.9819 49 1 1.7071 -2.9049 -3.4344 50 1 3.3049 -2.9381 -2.6271 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111273403.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:50 Heat of formation + Delta-G solvation = -39.303106 kcal Electronic energy + Delta-G solvation = -31092.597398 eV Core-core repulsion = 27120.272448 eV Total energy + Delta-G solvation = -3972.324950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.77817 -41.27158 -39.87163 -37.36198 -35.82881 -35.20426 -34.59908 -31.55866 -31.28067 -30.73316 -30.07805 -28.43347 -28.36967 -25.93721 -23.93802 -22.89282 -22.72590 -21.98130 -21.31142 -20.47984 -19.77434 -18.97016 -18.34935 -17.86547 -17.76939 -17.31864 -16.79745 -16.11790 -15.95377 -15.68651 -15.36463 -15.30914 -14.97764 -14.79200 -14.64986 -14.51840 -14.29555 -13.93996 -13.79658 -13.59340 -13.28999 -13.12507 -12.96176 -12.88152 -12.85755 -12.82991 -12.64296 -12.41798 -12.41454 -12.07138 -11.99906 -11.84845 -11.79469 -11.52142 -11.28436 -11.12572 -10.92231 -10.68046 -10.60204 -9.97657 -9.61145 -9.22352 -8.12868 -5.33195 1.24046 1.38813 1.46309 1.62629 1.65743 2.11809 2.27312 2.41587 2.92080 3.16855 3.46550 3.67767 3.67983 3.78147 3.83790 3.84972 4.03417 4.08771 4.13455 4.24969 4.26435 4.30256 4.36046 4.46808 4.48521 4.54968 4.61207 4.65425 4.68676 4.68734 4.75633 4.78880 4.84452 4.90175 4.93750 5.04605 5.09001 5.11393 5.22494 5.23260 5.28725 5.34176 5.40308 5.56378 5.66047 5.72050 6.12317 6.27680 6.55781 6.62936 7.22861 7.24429 7.49060 8.22314 9.07379 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014718 B = 0.003791 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.010298 B = 7384.867858 C = 8049.545470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.173 3.827 3 H 0.107 0.893 4 C -0.162 4.162 5 C 0.516 3.484 6 O -0.560 6.560 7 N -0.719 5.719 8 C 0.140 3.860 9 H 0.099 0.901 10 C -0.123 4.123 11 C 0.132 3.868 12 H 0.095 0.905 13 C -0.120 4.120 14 C -0.131 4.131 15 C 0.104 3.896 16 H 0.075 0.925 17 N -0.626 5.626 18 C -0.205 4.205 19 H 0.063 0.937 20 C -0.042 4.042 21 N -0.962 5.962 22 Si 0.930 3.070 23 H -0.284 1.284 24 H -0.321 1.321 25 H -0.239 1.239 26 N -0.601 5.601 27 C 0.102 3.898 28 C -0.117 4.117 29 C -0.154 4.154 30 C 0.497 3.503 31 O -0.583 6.583 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.046 0.954 35 H 0.118 0.882 36 H 0.085 0.915 37 H 0.399 0.601 38 H 0.043 0.957 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.058 0.942 42 H 0.092 0.908 43 H 0.056 0.944 44 H 0.258 0.742 45 H 0.092 0.908 46 H 0.068 0.932 47 H 0.098 0.902 48 H 0.108 0.892 49 H 0.110 0.890 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.132 12.462 -21.148 24.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.070 3.930 3 H 0.125 0.875 4 C -0.202 4.202 5 C 0.304 3.696 6 O -0.439 6.439 7 N -0.368 5.368 8 C 0.033 3.967 9 H 0.116 0.884 10 C -0.163 4.163 11 C 0.026 3.974 12 H 0.113 0.887 13 C -0.159 4.159 14 C -0.171 4.171 15 C -0.002 4.002 16 H 0.092 0.908 17 N -0.349 5.349 18 C -0.333 4.333 19 H 0.080 0.920 20 C -0.235 4.235 21 N -0.611 5.611 22 Si 0.761 3.239 23 H -0.212 1.212 24 H -0.251 1.251 25 H -0.164 1.164 26 N -0.333 5.333 27 C -0.020 4.020 28 C -0.154 4.154 29 C -0.194 4.194 30 C 0.287 3.713 31 O -0.465 6.465 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.136 0.864 36 H 0.104 0.896 37 H 0.232 0.768 38 H 0.062 0.938 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.077 0.923 42 H 0.110 0.890 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.111 0.889 46 H 0.087 0.913 47 H 0.116 0.884 48 H 0.127 0.873 49 H 0.128 0.872 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.196 12.423 -21.109 24.494 hybrid contribution -0.465 -0.189 1.818 1.886 sum -0.661 12.234 -19.292 22.853 Atomic orbital electron populations 1.22099 0.93235 1.02500 1.03719 1.20724 0.94423 0.96260 0.81632 0.87546 1.22209 0.91851 1.04313 1.01838 1.20800 0.90424 0.77603 0.80800 1.90555 1.70870 1.43979 1.38525 1.46201 1.08231 1.55749 1.26589 1.22413 0.79252 0.98879 0.96150 0.88362 1.23252 0.99129 0.96455 0.97489 1.23208 0.90247 0.97866 0.86053 0.88666 1.22923 0.96833 0.95508 1.00656 1.23060 0.94042 0.99121 1.00853 1.23506 0.96921 0.85479 0.94307 0.90761 1.46921 1.56954 1.01684 1.29365 1.18524 1.26629 0.88962 0.99155 0.91967 1.25268 0.98825 1.00895 0.98558 1.69971 1.28443 1.39935 1.22737 0.86178 0.80523 0.81762 0.75403 1.21226 1.25127 1.16350 1.48391 1.50016 1.11830 1.23112 1.22270 0.95155 0.97891 0.86732 1.22620 1.04882 0.91678 0.96231 1.22362 1.02586 1.00539 0.93905 1.21609 0.79388 0.81815 0.88519 1.90671 1.42491 1.55733 1.57559 0.89627 0.90790 0.93484 0.86406 0.89632 0.76771 0.93777 0.88911 0.88623 0.92332 0.89000 0.92561 0.93303 0.88937 0.91333 0.88393 0.87321 0.87217 0.88167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 9.20 71.98 0.66 -2.49 16 2 C 0.17 3.95 2.43 44.99 0.11 4.06 16 3 H 0.11 2.17 7.88 -2.39 -0.02 2.16 16 4 C -0.16 -4.47 5.12 29.85 0.15 -4.32 16 5 C 0.52 16.43 7.69 87.66 0.67 17.11 16 6 O -0.56 -18.20 13.29 -3.02 -0.04 -18.24 16 7 N -0.72 -25.29 5.07 -435.02 -2.21 -27.50 16 8 C 0.14 4.73 2.80 46.59 0.13 4.86 16 9 H 0.10 3.10 7.23 -2.39 -0.02 3.08 16 10 C -0.12 -3.96 6.23 32.21 0.20 -3.76 16 11 C 0.13 4.65 5.48 46.23 0.25 4.90 16 12 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 13 C -0.12 -3.49 6.44 32.21 0.21 -3.29 16 14 C -0.13 -4.18 6.21 32.21 0.20 -3.98 16 15 C 0.10 4.02 3.14 46.21 0.14 4.17 16 16 H 0.07 3.18 3.49 -2.38 -0.01 3.17 16 17 N -0.63 -27.94 2.84 -615.47 -1.75 -29.69 16 18 C -0.20 -11.34 10.94 84.03 0.92 -10.42 16 19 H 0.06 3.80 8.06 -2.91 -0.02 3.78 16 20 C -0.04 -2.43 5.49 84.86 0.47 -1.96 16 21 N -0.96 -60.40 13.97 21.65 0.30 -60.09 16 22 Si 0.93 45.22 24.62 68.60 1.69 46.91 16 23 H -0.28 -13.28 6.75 99.48 0.67 -12.61 16 24 H -0.32 -16.39 7.11 99.48 0.71 -15.68 16 25 H -0.24 -10.64 4.84 99.48 0.48 -10.16 16 26 N -0.60 -13.97 2.20 -794.03 -1.75 -15.71 16 27 C 0.10 1.72 6.82 86.83 0.59 2.31 16 28 C -0.12 -1.35 7.18 31.65 0.23 -1.13 16 29 C -0.15 -2.79 6.86 30.59 0.21 -2.58 16 30 C 0.50 13.60 7.40 87.90 0.65 14.25 16 31 O -0.58 -21.08 15.07 -3.03 -0.05 -21.13 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.05 1.21 6.82 -2.39 -0.02 1.19 16 35 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.09 2.84 6.60 -2.39 -0.02 2.83 16 37 H 0.40 15.57 8.66 -92.71 -0.80 14.76 16 38 H 0.04 1.59 7.98 -2.39 -0.02 1.57 16 39 H 0.09 2.44 7.82 -2.38 -0.02 2.43 16 40 H 0.10 2.12 7.82 -2.39 -0.02 2.10 16 41 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 42 H 0.09 2.33 7.82 -2.39 -0.02 2.31 16 43 H 0.06 1.93 6.58 -2.39 -0.02 1.92 16 44 H 0.26 15.56 8.31 -92.70 -0.77 14.79 16 45 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.07 1.43 6.80 -2.39 -0.02 1.42 16 47 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 49 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -73.90 378.46 1.88 -72.02 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: -0.11 Total: 35.71 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: 5.80 Total: 17.73 kcal Atomic # 7 Polarization: -127.59 SS G_CDS: -5.40 Total: -133.00 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -0.09 Total: -39.37 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.69 Total: 46.91 kcal Total: -73.90 1.88 -72.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111273403.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.714 kcal (2) G-P(sol) polarization free energy of solvation -73.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds