Wall clock time and date at job start Tue Mar 31 2020 19:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46913 * 2 1 4 4 C 1.52999 * 109.47199 * 239.99963 * 2 1 3 5 5 C 1.50700 * 109.47328 * 174.99752 * 4 2 1 6 6 O 1.21285 * 119.99861 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00335 * 180.02562 * 5 4 2 8 8 C 1.46489 * 120.00112 * 180.02562 * 7 5 4 9 9 H 1.09001 * 110.56445 * 32.09951 * 8 7 5 10 10 C 1.54848 * 110.62777 * 269.02178 * 8 7 5 11 11 C 1.55850 * 103.44874 * 241.51189 * 10 8 7 12 12 H 1.08996 * 115.56114 * 159.56633 * 11 10 8 13 13 C 1.55845 * 105.05971 * 288.17244 * 11 10 8 14 14 C 1.54856 * 103.44457 * 71.82501 * 13 11 10 15 15 C 1.55843 * 103.44717 * 359.97438 * 14 13 11 16 16 H 1.08996 * 115.56275 * 159.56537 * 15 14 13 17 17 N 1.50235 * 101.04828 * 32.93340 * 11 10 8 18 18 C 1.36946 * 130.83532 * 126.06460 * 17 11 10 19 19 H 1.07998 * 119.99912 * 179.97438 * 18 17 11 20 20 C 1.38815 * 119.99706 * 359.95992 * 18 17 11 21 21 N 1.31613 * 120.00459 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99586 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47189 * 90.00018 * 22 20 18 24 24 H 1.48496 * 109.47081 * 209.99911 * 22 20 18 25 25 H 1.48496 * 109.47356 * 329.99891 * 22 20 18 26 26 N 1.46494 * 109.47349 * 119.99782 * 2 1 3 27 27 C 1.46765 * 124.35470 * 240.05136 * 26 2 1 28 28 C 1.54831 * 105.49704 * 197.01816 * 27 26 2 29 29 C 1.54631 * 101.60220 * 334.56264 * 28 27 26 30 30 C 1.34418 * 124.34952 * 60.02754 * 26 2 1 31 31 O 1.21288 * 124.94305 * 359.64879 * 30 26 2 32 32 H 1.08998 * 109.47427 * 299.99744 * 1 2 3 33 33 H 1.09000 * 109.47616 * 60.00154 * 1 2 3 34 34 H 1.09006 * 109.46913 * 180.02562 * 1 2 3 35 35 H 1.08996 * 109.47315 * 294.99936 * 4 2 1 36 36 H 1.09009 * 109.46934 * 54.99880 * 4 2 1 37 37 H 0.96998 * 119.99426 * 359.97438 * 7 5 4 38 38 H 1.08998 * 110.62543 * 0.02562 * 10 8 7 39 39 H 1.09004 * 110.62665 * 123.02075 * 10 8 7 40 40 H 1.08992 * 110.63220 * 313.33223 * 13 11 10 41 41 H 1.09009 * 110.75917 * 190.37216 * 13 11 10 42 42 H 1.08997 * 110.62280 * 241.50385 * 14 13 11 43 43 H 1.09005 * 110.76025 * 118.54758 * 14 13 11 44 44 H 0.96996 * 120.00717 * 180.02562 * 21 20 18 45 45 H 1.09001 * 110.23936 * 315.99466 * 27 26 2 46 46 H 1.08998 * 110.24401 * 77.90012 * 27 26 2 47 47 H 1.08999 * 111.07622 * 216.48807 * 28 27 26 48 48 H 1.08994 * 111.01534 * 92.61619 * 28 27 26 49 49 H 1.09002 * 110.48855 * 266.08223 * 29 28 27 50 50 H 1.08998 * 110.48570 * 143.57284 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3128 6 8 4.1450 -0.0203 -0.4446 7 7 4.2149 -1.1796 -2.3348 8 6 5.6748 -1.0766 -2.3963 9 1 6.0998 -1.0566 -1.3927 10 6 6.1000 0.1783 -3.1976 11 6 6.8981 -0.4120 -4.3991 12 1 6.9965 0.2423 -5.2652 13 6 8.2371 -0.9206 -3.7849 14 6 7.8120 -2.1756 -2.9835 15 6 6.2739 -2.2541 -3.2221 16 1 5.8201 -3.2295 -3.0475 17 7 6.1712 -1.7084 -4.6184 18 6 5.5934 -2.2316 -5.7444 19 1 5.1089 -3.1960 -5.7043 20 6 5.6303 -1.5223 -6.9370 21 7 6.2200 -0.3467 -6.9856 22 14 4.8427 -2.2363 -8.4730 23 1 3.4238 -1.8046 -8.5482 24 1 5.5713 -1.7530 -9.6733 25 1 4.9068 -3.7189 -8.4187 26 7 2.0183 -0.6905 1.1961 27 6 2.8647 -0.0709 2.2226 28 6 3.4737 -1.2483 3.0227 29 6 2.4203 -2.3570 2.7948 30 6 1.7485 -1.9730 1.4948 31 8 1.0662 -2.7147 0.8200 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.7517 -1.7715 -1.2056 36 1 1.6053 -0.2617 -2.1370 37 1 3.7325 -1.6548 -3.0293 38 1 5.2245 0.7243 -3.5490 39 1 6.7378 0.8225 -2.5923 40 1 8.6657 -0.1688 -3.1222 41 1 8.9452 -1.1877 -4.5695 42 1 8.0298 -2.0461 -1.9234 43 1 8.3068 -3.0667 -3.3700 44 1 6.2455 0.1492 -7.8189 45 1 3.6555 0.5160 1.7554 46 1 2.2633 0.5605 2.8766 47 1 3.5573 -1.0013 4.0810 48 1 4.4413 -1.5395 2.6140 49 1 1.6962 -2.3687 3.6095 50 1 2.9039 -3.3294 2.7016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111273404.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:55 Heat of formation + Delta-G solvation = -29.424886 kcal Electronic energy + Delta-G solvation = -30744.609868 eV Core-core repulsion = 26772.713270 eV Total energy + Delta-G solvation = -3971.896598 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.67956 -39.62705 -38.31719 -36.32509 -34.87617 -33.69375 -32.53204 -30.29071 -29.13708 -29.05874 -28.37091 -27.52662 -26.98027 -24.21552 -22.87112 -22.01167 -21.39472 -19.90515 -19.78823 -18.83939 -18.55382 -17.04099 -16.90997 -16.78107 -16.37692 -15.82807 -15.19505 -14.83667 -14.64258 -14.10397 -13.97562 -13.86590 -13.72555 -13.62483 -13.46187 -13.02166 -12.92501 -12.74468 -12.10302 -12.02301 -11.98400 -11.81093 -11.75181 -11.57548 -11.21778 -11.20112 -11.13469 -11.07382 -10.94631 -10.90891 -10.52228 -10.36236 -10.10722 -9.92844 -9.63137 -9.59653 -9.23280 -9.13252 -8.97640 -8.67993 -8.40662 -6.96292 -5.76240 -3.15144 2.59057 2.97894 3.06652 3.35355 3.41055 3.42586 3.65136 4.29188 4.39570 4.42293 4.74088 4.77524 4.88036 4.98833 5.11214 5.15204 5.30091 5.34980 5.43660 5.46613 5.50270 5.59113 5.64188 5.66802 5.67812 5.70770 5.77133 5.86389 5.87494 5.95853 6.04607 6.07787 6.11861 6.14075 6.30692 6.41679 6.48143 6.60188 6.61214 6.74330 6.81487 6.94378 7.14403 7.19156 7.31643 7.46363 7.77595 8.05108 8.14037 8.20122 8.67800 9.05803 9.68855 10.50030 11.32988 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015120 B = 0.003312 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.423368 B = 8451.800215 C = 9311.517869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.175 3.825 3 H 0.095 0.905 4 C -0.164 4.164 5 C 0.514 3.486 6 O -0.554 6.554 7 N -0.706 5.706 8 C 0.131 3.869 9 H 0.077 0.923 10 C -0.142 4.142 11 C 0.156 3.844 12 H 0.151 0.849 13 C -0.139 4.139 14 C -0.128 4.128 15 C 0.125 3.875 16 H 0.086 0.914 17 N -0.590 5.590 18 C -0.215 4.215 19 H 0.078 0.922 20 C -0.009 4.009 21 N -0.920 5.920 22 Si 0.914 3.086 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 N -0.599 5.599 27 C 0.104 3.896 28 C -0.129 4.129 29 C -0.157 4.157 30 C 0.515 3.485 31 O -0.539 6.539 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.402 0.598 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.055 0.945 42 H 0.050 0.950 43 H 0.056 0.944 44 H 0.254 0.746 45 H 0.095 0.905 46 H 0.062 0.938 47 H 0.085 0.915 48 H 0.082 0.918 49 H 0.099 0.901 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.999 1.525 18.189 19.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.072 3.928 3 H 0.113 0.887 4 C -0.204 4.204 5 C 0.300 3.700 6 O -0.434 6.434 7 N -0.355 5.355 8 C 0.024 3.976 9 H 0.095 0.905 10 C -0.182 4.182 11 C 0.049 3.951 12 H 0.168 0.832 13 C -0.178 4.178 14 C -0.168 4.168 15 C 0.016 3.984 16 H 0.104 0.896 17 N -0.311 5.311 18 C -0.343 4.343 19 H 0.096 0.904 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.745 3.255 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.208 1.208 26 N -0.332 5.332 27 C -0.019 4.019 28 C -0.167 4.167 29 C -0.197 4.197 30 C 0.302 3.698 31 O -0.417 6.417 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.237 0.763 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.113 0.887 46 H 0.081 0.919 47 H 0.104 0.896 48 H 0.101 0.899 49 H 0.117 0.883 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.022 1.601 18.029 19.075 hybrid contribution -0.532 -0.558 -1.163 1.396 sum -6.554 1.042 16.866 18.124 Atomic orbital electron populations 1.22187 0.94444 1.03702 1.02192 1.20630 0.93474 0.96290 0.82368 0.88721 1.22179 0.93672 1.04811 0.99765 1.20431 0.89473 0.78568 0.81540 1.90568 1.70368 1.43249 1.39168 1.46032 1.08405 1.55478 1.25607 1.22561 0.78725 0.97876 0.98403 0.90477 1.23443 1.00463 0.96003 0.98290 1.23685 0.87243 0.88851 0.95298 0.83218 1.23064 1.00130 0.96307 0.98299 1.22881 0.97113 0.98723 0.98080 1.23149 0.93986 0.94410 0.86825 0.89585 1.46516 1.63510 1.17718 1.03342 1.19009 1.28127 1.01288 0.85843 0.90426 1.24692 1.01280 0.96887 0.97658 1.69484 1.48209 1.13357 1.25700 0.86074 0.78605 0.78123 0.82682 1.21692 1.21702 1.20790 1.48196 1.50578 1.11919 1.22507 1.22171 0.94460 0.95940 0.89329 1.22616 0.98824 0.94423 1.00873 1.22324 0.99463 1.01012 0.96872 1.20877 0.80132 0.81695 0.87049 1.90683 1.40200 1.54915 1.55871 0.92334 0.91244 0.90912 0.87698 0.88033 0.76330 0.92329 0.92985 0.93388 0.92656 0.93113 0.92498 0.93566 0.88668 0.91933 0.89611 0.89919 0.88289 0.88444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 9.20 37.16 0.34 -1.37 16 2 C 0.18 2.07 2.43 -67.94 -0.16 1.91 16 3 H 0.09 1.10 7.88 -51.93 -0.41 0.69 16 4 C -0.16 -2.17 5.13 -27.88 -0.14 -2.31 16 5 C 0.51 8.29 7.69 -10.99 -0.08 8.20 16 6 O -0.55 -9.71 13.26 5.55 0.07 -9.64 16 7 N -0.71 -12.18 5.07 -51.43 -0.26 -12.44 16 8 C 0.13 2.42 2.80 -65.47 -0.18 2.24 16 9 H 0.08 1.43 7.23 -51.93 -0.38 1.06 16 10 C -0.14 -2.86 6.23 -24.24 -0.15 -3.01 16 11 C 0.16 3.52 4.69 -62.80 -0.29 3.23 16 12 H 0.15 3.89 5.57 -51.93 -0.29 3.60 16 13 C -0.14 -2.73 6.44 -24.23 -0.16 -2.89 16 14 C -0.13 -2.33 6.44 -24.23 -0.16 -2.49 16 15 C 0.12 2.45 5.06 -62.81 -0.32 2.13 16 16 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 17 N -0.59 -13.95 2.99 -145.82 -0.44 -14.38 16 18 C -0.21 -5.61 10.59 -15.05 -0.16 -5.77 16 19 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 21 N -0.92 -25.65 10.48 55.49 0.58 -25.07 16 22 Si 0.91 21.41 29.55 -169.99 -5.02 16.39 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 N -0.60 -7.13 2.20 -164.63 -0.36 -7.49 16 27 C 0.10 1.01 6.87 -2.93 -0.02 0.99 16 28 C -0.13 -1.05 7.21 -24.91 -0.18 -1.23 16 29 C -0.16 -1.46 6.85 -26.74 -0.18 -1.64 16 30 C 0.51 6.74 7.39 -10.86 -0.08 6.66 16 31 O -0.54 -8.82 15.07 5.55 0.08 -8.73 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.89 6.78 -51.93 -0.35 0.53 16 35 H 0.10 1.52 6.64 -51.93 -0.35 1.17 16 36 H 0.10 1.19 8.14 -51.92 -0.42 0.77 16 37 H 0.40 6.96 8.66 -40.82 -0.35 6.61 16 38 H 0.06 1.28 7.98 -51.93 -0.41 0.86 16 39 H 0.05 0.98 7.82 -51.93 -0.41 0.57 16 40 H 0.05 0.84 7.81 -51.93 -0.41 0.44 16 41 H 0.05 1.15 8.14 -51.92 -0.42 0.72 16 42 H 0.05 0.81 7.82 -51.93 -0.41 0.41 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 45 H 0.10 1.09 6.72 -51.93 -0.35 0.74 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 387.05 15.07 5.83 5.83 Total: -1.00 -30.73 387.05 -9.84 -40.57 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -8.30 Total: 10.67 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -2.03 Total: 4.30 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: -0.48 Total: -59.38 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.16 Total: -18.38 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.73 -9.84 -40.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111273404.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.144 kcal (2) G-P(sol) polarization free energy of solvation -30.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds