Wall clock time and date at job start Tue Mar 31 2020 19:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46913 * 2 1 4 4 C 1.52999 * 109.47199 * 239.99963 * 2 1 3 5 5 C 1.50700 * 109.47328 * 174.99752 * 4 2 1 6 6 O 1.21285 * 119.99861 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00335 * 180.02562 * 5 4 2 8 8 C 1.46489 * 120.00112 * 180.02562 * 7 5 4 9 9 H 1.09001 * 110.56445 * 32.09951 * 8 7 5 10 10 C 1.54848 * 110.62777 * 269.02178 * 8 7 5 11 11 C 1.55850 * 103.44874 * 241.51189 * 10 8 7 12 12 H 1.08996 * 115.56114 * 159.56633 * 11 10 8 13 13 C 1.55845 * 105.05971 * 288.17244 * 11 10 8 14 14 C 1.54856 * 103.44457 * 71.82501 * 13 11 10 15 15 C 1.55843 * 103.44717 * 359.97438 * 14 13 11 16 16 H 1.08996 * 115.56275 * 159.56537 * 15 14 13 17 17 N 1.50235 * 101.04828 * 32.93340 * 11 10 8 18 18 C 1.36946 * 130.83532 * 126.06460 * 17 11 10 19 19 H 1.07998 * 119.99912 * 179.97438 * 18 17 11 20 20 C 1.38815 * 119.99706 * 359.95992 * 18 17 11 21 21 N 1.31613 * 120.00459 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99586 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47189 * 90.00018 * 22 20 18 24 24 H 1.48496 * 109.47081 * 209.99911 * 22 20 18 25 25 H 1.48496 * 109.47356 * 329.99891 * 22 20 18 26 26 N 1.46494 * 109.47349 * 119.99782 * 2 1 3 27 27 C 1.46765 * 124.35470 * 240.05136 * 26 2 1 28 28 C 1.54831 * 105.49704 * 197.01816 * 27 26 2 29 29 C 1.54631 * 101.60220 * 334.56264 * 28 27 26 30 30 C 1.34418 * 124.34952 * 60.02754 * 26 2 1 31 31 O 1.21288 * 124.94305 * 359.64879 * 30 26 2 32 32 H 1.08998 * 109.47427 * 299.99744 * 1 2 3 33 33 H 1.09000 * 109.47616 * 60.00154 * 1 2 3 34 34 H 1.09006 * 109.46913 * 180.02562 * 1 2 3 35 35 H 1.08996 * 109.47315 * 294.99936 * 4 2 1 36 36 H 1.09009 * 109.46934 * 54.99880 * 4 2 1 37 37 H 0.96998 * 119.99426 * 359.97438 * 7 5 4 38 38 H 1.08998 * 110.62543 * 0.02562 * 10 8 7 39 39 H 1.09004 * 110.62665 * 123.02075 * 10 8 7 40 40 H 1.08992 * 110.63220 * 313.33223 * 13 11 10 41 41 H 1.09009 * 110.75917 * 190.37216 * 13 11 10 42 42 H 1.08997 * 110.62280 * 241.50385 * 14 13 11 43 43 H 1.09005 * 110.76025 * 118.54758 * 14 13 11 44 44 H 0.96996 * 120.00717 * 180.02562 * 21 20 18 45 45 H 1.09001 * 110.23936 * 315.99466 * 27 26 2 46 46 H 1.08998 * 110.24401 * 77.90012 * 27 26 2 47 47 H 1.08999 * 111.07622 * 216.48807 * 28 27 26 48 48 H 1.08994 * 111.01534 * 92.61619 * 28 27 26 49 49 H 1.09002 * 110.48855 * 266.08223 * 29 28 27 50 50 H 1.08998 * 110.48570 * 143.57284 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3128 6 8 4.1450 -0.0203 -0.4446 7 7 4.2149 -1.1796 -2.3348 8 6 5.6748 -1.0766 -2.3963 9 1 6.0998 -1.0566 -1.3927 10 6 6.1000 0.1783 -3.1976 11 6 6.8981 -0.4120 -4.3991 12 1 6.9965 0.2423 -5.2652 13 6 8.2371 -0.9206 -3.7849 14 6 7.8120 -2.1756 -2.9835 15 6 6.2739 -2.2541 -3.2221 16 1 5.8201 -3.2295 -3.0475 17 7 6.1712 -1.7084 -4.6184 18 6 5.5934 -2.2316 -5.7444 19 1 5.1089 -3.1960 -5.7043 20 6 5.6303 -1.5223 -6.9370 21 7 6.2200 -0.3467 -6.9856 22 14 4.8427 -2.2363 -8.4730 23 1 3.4238 -1.8046 -8.5482 24 1 5.5713 -1.7530 -9.6733 25 1 4.9068 -3.7189 -8.4187 26 7 2.0183 -0.6905 1.1961 27 6 2.8647 -0.0709 2.2226 28 6 3.4737 -1.2483 3.0227 29 6 2.4203 -2.3570 2.7948 30 6 1.7485 -1.9730 1.4948 31 8 1.0662 -2.7147 0.8200 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.7517 -1.7715 -1.2056 36 1 1.6053 -0.2617 -2.1370 37 1 3.7325 -1.6548 -3.0293 38 1 5.2245 0.7243 -3.5490 39 1 6.7378 0.8225 -2.5923 40 1 8.6657 -0.1688 -3.1222 41 1 8.9452 -1.1877 -4.5695 42 1 8.0298 -2.0461 -1.9234 43 1 8.3068 -3.0667 -3.3700 44 1 6.2455 0.1492 -7.8189 45 1 3.6555 0.5160 1.7554 46 1 2.2633 0.5605 2.8766 47 1 3.5573 -1.0013 4.0810 48 1 4.4413 -1.5395 2.6140 49 1 1.6962 -2.3687 3.6095 50 1 2.9039 -3.3294 2.7016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111273404.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:54 Heat of formation + Delta-G solvation = -47.346171 kcal Electronic energy + Delta-G solvation = -30745.386993 eV Core-core repulsion = 26772.713270 eV Total energy + Delta-G solvation = -3972.673724 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.69854 -41.06124 -39.72560 -37.32120 -35.79881 -35.18823 -34.39911 -31.24873 -30.97800 -30.45797 -29.77170 -28.33136 -28.28685 -26.10993 -23.88905 -22.77499 -22.74460 -21.53951 -21.24925 -20.31570 -19.69474 -18.86663 -18.01785 -17.82584 -17.32794 -17.18798 -16.76526 -16.31781 -15.91707 -15.63038 -15.40855 -14.95699 -14.89168 -14.66570 -14.51896 -14.35550 -13.78839 -13.76764 -13.67322 -13.61023 -13.08404 -12.93152 -12.86326 -12.81230 -12.76813 -12.70790 -12.59045 -12.39019 -12.11019 -12.06130 -11.96666 -11.91017 -11.79437 -11.70774 -11.18262 -10.94786 -10.91527 -10.58443 -10.56869 -9.87810 -9.59895 -8.87233 -7.76965 -5.16382 1.48200 1.48702 1.56604 1.63514 1.73479 2.14159 2.34522 2.49543 3.36595 3.43553 3.48161 3.70060 3.74833 3.86152 4.01842 4.08354 4.10261 4.15490 4.26092 4.28070 4.37446 4.45350 4.49575 4.52013 4.63037 4.66151 4.70527 4.72665 4.76047 4.81964 4.82908 4.90320 4.94155 5.00257 5.07628 5.08938 5.16861 5.20020 5.23993 5.28167 5.37139 5.51388 5.61942 5.71295 5.75402 5.90024 6.25656 6.29907 6.67860 7.05872 7.24888 7.33319 7.71634 8.57724 9.30433 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015120 B = 0.003312 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.423368 B = 8451.800215 C = 9311.517869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.171 3.829 3 H 0.099 0.901 4 C -0.156 4.156 5 C 0.512 3.488 6 O -0.565 6.565 7 N -0.711 5.711 8 C 0.145 3.855 9 H 0.086 0.914 10 C -0.130 4.130 11 C 0.141 3.859 12 H 0.114 0.886 13 C -0.131 4.131 14 C -0.119 4.119 15 C 0.124 3.876 16 H 0.094 0.906 17 N -0.610 5.610 18 C -0.216 4.216 19 H 0.081 0.919 20 C -0.064 4.064 21 N -0.946 5.946 22 Si 0.972 3.028 23 H -0.290 1.290 24 H -0.299 1.299 25 H -0.274 1.274 26 N -0.601 5.601 27 C 0.100 3.900 28 C -0.119 4.119 29 C -0.151 4.151 30 C 0.500 3.500 31 O -0.581 6.581 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.051 0.949 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.401 0.599 38 H 0.034 0.966 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.037 0.963 42 H 0.082 0.918 43 H 0.057 0.943 44 H 0.246 0.754 45 H 0.077 0.923 46 H 0.088 0.912 47 H 0.119 0.881 48 H 0.069 0.931 49 H 0.122 0.878 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.276 1.323 20.698 21.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.068 3.932 3 H 0.117 0.883 4 C -0.197 4.197 5 C 0.300 3.700 6 O -0.445 6.445 7 N -0.360 5.360 8 C 0.038 3.962 9 H 0.104 0.896 10 C -0.170 4.170 11 C 0.035 3.965 12 H 0.131 0.869 13 C -0.170 4.170 14 C -0.159 4.159 15 C 0.017 3.983 16 H 0.112 0.888 17 N -0.332 5.332 18 C -0.345 4.345 19 H 0.099 0.901 20 C -0.257 4.257 21 N -0.596 5.596 22 Si 0.802 3.198 23 H -0.217 1.217 24 H -0.226 1.226 25 H -0.199 1.199 26 N -0.333 5.333 27 C -0.022 4.022 28 C -0.157 4.157 29 C -0.191 4.191 30 C 0.289 3.711 31 O -0.463 6.463 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.134 0.866 37 H 0.235 0.765 38 H 0.053 0.947 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.100 0.900 43 H 0.075 0.925 44 H 0.055 0.945 45 H 0.095 0.905 46 H 0.106 0.894 47 H 0.137 0.863 48 H 0.088 0.912 49 H 0.141 0.859 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.288 1.404 20.591 21.576 hybrid contribution -0.431 -0.459 -1.897 1.999 sum -6.719 0.944 18.694 19.887 Atomic orbital electron populations 1.22097 0.93146 1.02694 1.03578 1.20714 0.94475 0.96131 0.81901 0.88317 1.22163 0.91560 1.04482 1.01450 1.20880 0.90523 0.77782 0.80818 1.90562 1.70912 1.43620 1.39440 1.46064 1.07979 1.55903 1.26058 1.22337 0.79583 0.96248 0.98044 0.89603 1.23288 0.99385 0.96644 0.97687 1.23533 0.89322 0.88512 0.95140 0.86882 1.22959 0.98127 0.97650 0.98310 1.22831 0.95573 0.97830 0.99633 1.23337 0.95265 0.94978 0.84746 0.88800 1.46698 1.63649 1.18496 1.04326 1.19317 1.27166 1.01185 0.86808 0.90110 1.25385 1.02634 0.97483 1.00189 1.69729 1.49870 1.14467 1.25559 0.85156 0.77447 0.77783 0.79395 1.21693 1.22628 1.19868 1.48379 1.50337 1.11880 1.22704 1.22332 0.94160 0.96593 0.89145 1.22625 0.97502 0.93050 1.02513 1.22362 0.99952 1.01325 0.95429 1.21584 0.79786 0.81703 0.88029 1.90654 1.42161 1.55980 1.57456 0.91081 0.89762 0.92979 0.88870 0.86601 0.76474 0.94715 0.91438 0.90913 0.94414 0.89995 0.92452 0.94479 0.90472 0.89356 0.86266 0.91220 0.85947 0.88391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 9.20 71.98 0.66 -2.36 16 2 C 0.17 3.84 2.43 44.99 0.11 3.95 16 3 H 0.10 2.14 7.88 -2.38 -0.02 2.12 16 4 C -0.16 -4.04 5.13 29.85 0.15 -3.89 16 5 C 0.51 16.09 7.69 87.66 0.67 16.77 16 6 O -0.57 -19.09 13.26 -3.05 -0.04 -19.13 16 7 N -0.71 -24.03 5.07 -435.02 -2.21 -26.23 16 8 C 0.14 5.15 2.80 46.59 0.13 5.28 16 9 H 0.09 2.97 7.23 -2.39 -0.02 2.95 16 10 C -0.13 -5.16 6.23 32.21 0.20 -4.96 16 11 C 0.14 6.44 4.69 46.23 0.22 6.66 16 12 H 0.11 6.10 5.57 -2.39 -0.01 6.09 16 13 C -0.13 -5.02 6.44 32.21 0.21 -4.82 16 14 C -0.12 -4.06 6.44 32.21 0.21 -3.85 16 15 C 0.12 4.69 5.06 46.20 0.23 4.92 16 16 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 17 N -0.61 -28.87 2.99 -615.26 -1.84 -30.71 16 18 C -0.22 -11.36 10.59 84.03 0.89 -10.47 16 19 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 20 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 21 N -0.95 -54.49 10.48 21.65 0.23 -54.26 16 22 Si 0.97 44.75 29.55 68.60 2.03 46.78 16 23 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 24 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 25 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 26 N -0.60 -13.43 2.20 -793.34 -1.75 -15.18 16 27 C 0.10 1.70 6.87 86.95 0.60 2.29 16 28 C -0.12 -1.60 7.21 31.77 0.23 -1.37 16 29 C -0.15 -2.46 6.85 30.59 0.21 -2.25 16 30 C 0.50 12.57 7.39 87.90 0.65 13.22 16 31 O -0.58 -19.05 15.07 -3.05 -0.05 -19.10 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.05 1.24 6.78 -2.38 -0.02 1.23 16 35 H 0.09 2.71 6.64 -2.39 -0.02 2.69 16 36 H 0.12 2.63 8.14 -2.38 -0.02 2.61 16 37 H 0.40 13.80 8.66 -92.71 -0.80 13.00 16 38 H 0.03 1.52 7.98 -2.39 -0.02 1.50 16 39 H 0.07 2.44 7.82 -2.38 -0.02 2.43 16 40 H 0.07 2.40 7.81 -2.39 -0.02 2.38 16 41 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 42 H 0.08 2.32 7.82 -2.39 -0.02 2.30 16 43 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 44 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 45 H 0.08 1.63 6.72 -2.39 -0.02 1.61 16 46 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -67.88 387.05 2.35 -65.53 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: 0.14 Total: 36.21 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: 5.84 Total: 16.09 kcal Atomic # 7 Polarization: -120.82 SS G_CDS: -5.56 Total: -126.38 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -0.09 Total: -38.23 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -67.88 2.35 -65.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111273404.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.186 kcal (2) G-P(sol) polarization free energy of solvation -67.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds