Wall clock time and date at job start Tue Mar 31 2020 18:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46931 * 2 1 4 4 C 1.50700 * 109.46899 * 240.00894 * 2 1 3 5 5 O 1.21283 * 119.99638 * 239.99800 * 4 2 1 6 6 N 1.34775 * 120.00765 * 59.99497 * 4 2 1 7 7 C 1.46501 * 120.00266 * 179.97438 * 6 4 2 8 8 H 1.08994 * 115.51486 * 9.58563 * 7 6 4 9 9 C 1.52998 * 117.44347 * 224.22810 * 7 6 4 10 10 H 1.09006 * 119.52476 * 4.09722 * 9 7 6 11 11 C 1.54376 * 118.12657 * 160.68648 * 9 7 6 12 12 N 1.48563 * 104.59339 * 87.23276 * 11 9 7 13 13 C 1.46901 * 111.00239 * 200.96040 * 12 11 9 14 14 C 1.50695 * 109.47443 * 169.99666 * 13 12 11 15 15 O 1.21295 * 119.99733 * 0.02562 * 14 13 12 16 16 N 1.34774 * 120.00117 * 179.97438 * 14 13 12 17 17 C 1.37098 * 120.00204 * 180.02562 * 16 14 13 18 18 H 1.07998 * 119.99783 * 0.02562 * 17 16 14 19 19 C 1.38940 * 120.00225 * 180.02562 * 17 16 14 20 20 N 1.31416 * 120.00286 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 120.00165 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46871 * 90.00050 * 21 19 17 23 23 H 1.48494 * 109.47187 * 210.00172 * 21 19 17 24 24 H 1.48498 * 109.46828 * 330.00145 * 21 19 17 25 25 C 1.48564 * 104.22088 * 320.51820 * 12 11 9 26 26 C 1.53003 * 117.43831 * 155.00312 * 7 6 4 27 27 H 1.08997 * 119.53110 * 355.90979 * 26 7 6 28 28 C 1.52995 * 109.47340 * 120.00472 * 2 1 3 29 29 C 1.53785 * 113.69093 * 200.93689 * 28 2 1 30 30 C 1.53779 * 87.08093 * 139.99088 * 29 28 2 31 31 C 1.53781 * 113.61293 * 298.47313 * 28 2 1 32 32 H 1.08996 * 109.46987 * 59.99262 * 1 2 3 33 33 H 1.08994 * 109.46819 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.46687 * 299.99859 * 1 2 3 35 35 H 0.97007 * 119.99199 * 0.02562 * 6 4 2 36 36 H 1.08998 * 110.41545 * 206.00454 * 11 9 7 37 37 H 1.08998 * 110.41249 * 328.45434 * 11 9 7 38 38 H 1.08998 * 109.46838 * 290.00039 * 13 12 11 39 39 H 1.09006 * 109.46679 * 49.99373 * 13 12 11 40 40 H 0.97000 * 120.00281 * 0.02562 * 16 14 13 41 41 H 0.96998 * 120.00239 * 179.97438 * 20 19 17 42 42 H 1.09006 * 110.40696 * 280.70407 * 25 12 11 43 43 H 1.08996 * 110.41031 * 158.26261 * 25 12 11 44 44 H 1.09002 * 112.85043 * 69.66572 * 28 2 1 45 45 H 1.09003 * 113.60734 * 254.54208 * 29 28 2 46 46 H 1.08996 * 113.61146 * 25.43706 * 29 28 2 47 47 H 1.08994 * 113.61314 * 220.01752 * 30 29 28 48 48 H 1.09003 * 113.61186 * 89.11185 * 30 29 28 49 49 H 1.09005 * 113.61302 * 334.47929 * 31 28 2 50 50 H 1.08993 * 113.62030 * 105.38774 * 31 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 8 2.7296 -1.6963 -1.1194 6 7 1.7067 -0.2498 -2.4547 7 6 2.1955 -0.9400 -3.6509 8 1 2.6759 -1.9023 -3.4744 9 6 2.7449 -0.0765 -4.7882 10 1 2.8205 1.0028 -4.6549 11 6 3.6612 -0.7473 -5.8339 12 7 2.7287 -1.2928 -6.8537 13 6 3.3678 -2.3609 -7.6339 14 6 2.3316 -3.0530 -8.4813 15 8 1.1744 -2.6917 -8.4397 16 7 2.6907 -4.0727 -9.2860 17 6 1.7481 -4.7020 -10.0574 18 1 0.7178 -4.3803 -10.0204 19 6 2.1182 -5.7536 -10.8866 20 7 1.2147 -6.3565 -11.6263 21 14 3.9002 -6.3105 -10.9500 22 1 4.1262 -7.3638 -9.9280 23 1 4.2006 -6.8560 -12.2981 24 1 4.7902 -5.1541 -10.6744 25 6 1.5893 -1.8218 -6.0605 26 6 1.3819 -0.7833 -4.9372 27 1 0.4429 -0.2303 -4.9149 28 6 2.0401 -0.7213 1.2491 29 6 3.4861 -0.3576 1.6256 30 6 3.0227 -0.3641 3.0919 31 6 1.6121 -0.0511 2.5654 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3632 0.5138 0.8900 35 1 1.1493 0.5392 -2.5435 36 1 4.3277 -0.0112 -6.2835 37 1 4.2360 -1.5519 -5.3753 38 1 4.1354 -1.9311 -8.2774 39 1 3.8241 -3.0825 -6.9562 40 1 3.6161 -4.3614 -9.3195 41 1 1.4732 -7.0904 -12.2055 42 1 1.8399 -2.7946 -5.6373 43 1 0.6959 -1.8947 -6.6805 44 1 1.8521 -1.7947 1.2245 45 1 4.2080 -1.1403 1.3922 46 1 3.7958 0.6250 1.2698 47 1 3.4539 0.4390 3.6895 48 1 3.1034 -1.3398 3.5709 49 1 1.4096 1.0154 2.4666 50 1 0.8213 -0.5862 3.0909 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114449269.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:15 Heat of formation + Delta-G solvation = -34.890669 kcal Electronic energy + Delta-G solvation = -28475.441208 eV Core-core repulsion = 24503.307595 eV Total energy + Delta-G solvation = -3972.133612 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.67146 -40.95052 -39.93416 -39.03695 -36.42842 -35.80641 -34.41178 -33.78624 -32.92316 -29.41235 -29.21712 -27.09671 -26.50859 -26.10286 -24.69395 -23.16791 -22.03541 -21.43278 -21.22044 -21.07392 -20.26685 -20.12776 -18.22001 -17.90908 -17.63112 -16.86167 -16.58596 -16.38161 -16.24508 -16.06733 -15.74063 -15.32815 -15.13242 -14.89781 -14.83347 -14.42160 -14.13639 -13.98431 -13.72593 -13.51983 -13.36294 -13.30330 -13.20756 -13.05155 -12.99446 -12.54906 -12.49046 -12.46784 -12.37606 -12.14287 -12.00043 -11.92451 -11.51007 -11.40875 -11.25632 -11.11891 -11.00391 -10.70240 -10.33233 -10.25550 -9.80068 -9.43071 -8.43157 -6.03979 1.28760 1.33515 1.42638 1.52807 1.90428 1.91384 2.21038 2.57193 2.73871 3.12730 3.17304 3.48754 3.60740 3.66872 3.72107 3.73719 3.82827 3.95537 4.02430 4.03655 4.17694 4.24165 4.30649 4.33024 4.39343 4.45204 4.48723 4.53101 4.62764 4.78481 4.85858 4.86980 4.90026 4.94757 4.96834 5.04799 5.11184 5.11663 5.17413 5.21094 5.32372 5.41011 5.44430 5.50854 5.64442 5.77027 5.86180 5.99725 6.49512 6.56844 6.85849 7.21398 7.36333 7.92770 8.74226 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022688 B = 0.001876 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.811859 B =14920.970545 C =15145.836739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 H 0.124 0.876 4 C 0.517 3.483 5 O -0.581 6.581 6 N -0.687 5.687 7 C 0.110 3.890 8 H 0.107 0.893 9 C -0.152 4.152 10 H 0.145 0.855 11 C 0.058 3.942 12 N -0.503 5.503 13 C 0.041 3.959 14 C 0.449 3.551 15 O -0.604 6.604 16 N -0.590 5.590 17 C -0.328 4.328 18 H 0.057 0.943 19 C -0.014 4.014 20 N -0.933 5.933 21 Si 0.963 3.037 22 H -0.259 1.259 23 H -0.273 1.273 24 H -0.231 1.231 25 C 0.064 3.936 26 C -0.167 4.167 27 H 0.132 0.868 28 C -0.097 4.097 29 C -0.140 4.140 30 C -0.142 4.142 31 C -0.122 4.122 32 H 0.074 0.926 33 H 0.045 0.955 34 H 0.089 0.911 35 H 0.418 0.582 36 H 0.110 0.890 37 H 0.051 0.949 38 H 0.125 0.875 39 H 0.076 0.924 40 H 0.389 0.611 41 H 0.279 0.721 42 H 0.025 0.975 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.044 0.956 46 H 0.088 0.912 47 H 0.079 0.921 48 H 0.073 0.927 49 H 0.101 0.899 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.059 18.205 28.241 34.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 H 0.142 0.858 4 C 0.305 3.695 5 O -0.459 6.459 6 N -0.337 5.337 7 C 0.003 3.997 8 H 0.125 0.875 9 C -0.172 4.172 10 H 0.162 0.838 11 C -0.069 4.069 12 N -0.228 5.228 13 C -0.091 4.091 14 C 0.237 3.763 15 O -0.488 6.488 16 N -0.231 5.231 17 C -0.457 4.457 18 H 0.075 0.925 19 C -0.213 4.213 20 N -0.573 5.573 21 Si 0.783 3.217 22 H -0.184 1.184 23 H -0.198 1.198 24 H -0.154 1.154 25 C -0.063 4.063 26 C -0.188 4.188 27 H 0.150 0.850 28 C -0.116 4.116 29 C -0.177 4.177 30 C -0.180 4.180 31 C -0.160 4.160 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.256 0.744 36 H 0.128 0.872 37 H 0.069 0.931 38 H 0.143 0.857 39 H 0.094 0.906 40 H 0.225 0.775 41 H 0.089 0.911 42 H 0.043 0.957 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.063 0.937 46 H 0.106 0.894 47 H 0.097 0.903 48 H 0.092 0.908 49 H 0.119 0.881 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.548 17.997 27.810 33.766 hybrid contribution 0.488 -1.510 -0.460 1.652 sum 7.036 16.487 27.350 32.701 Atomic orbital electron populations 1.21789 0.91300 1.02494 1.04388 1.21406 0.98521 1.01004 0.90215 0.85800 1.21418 0.78815 0.83971 0.85270 1.90693 1.39649 1.28330 1.87268 1.45239 1.52972 1.31793 1.03707 1.21512 1.00214 0.97131 0.80870 0.87544 1.24004 0.95103 1.00246 0.97848 0.83773 1.22796 0.94218 0.99277 0.90579 1.65417 1.06867 1.29103 1.21383 1.22096 0.95469 0.93994 0.97495 1.20777 0.90184 0.81920 0.83445 1.90495 1.22263 1.66804 1.69281 1.42020 1.09978 1.31555 1.39576 1.18999 0.91643 1.14331 1.20701 0.92491 1.26094 1.04405 0.95795 0.94992 1.69799 1.36624 1.23890 1.27008 0.85392 0.77097 0.80142 0.79090 1.18367 1.19848 1.15442 1.22619 0.96619 0.94361 0.92730 1.23863 0.97465 1.01946 0.95485 0.85048 1.22354 0.96744 0.99242 0.93251 1.22962 0.96176 1.01440 0.97144 1.22810 0.97256 1.02111 0.95801 1.22938 0.96847 1.01709 0.94468 0.90735 0.93599 0.89172 0.74398 0.87150 0.93076 0.85695 0.90595 0.77536 0.91122 0.95692 0.90081 0.91174 0.93671 0.89363 0.90275 0.90800 0.88083 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.91 71.98 0.64 -0.55 16 2 C -0.09 -1.05 2.46 -11.54 -0.03 -1.08 16 3 H 0.12 0.82 7.98 -2.38 -0.02 0.80 16 4 C 0.52 10.15 7.13 87.66 0.63 10.77 16 5 O -0.58 -17.13 15.39 -3.04 -0.05 -17.17 16 6 N -0.69 -11.19 5.46 -442.54 -2.41 -13.61 16 7 C 0.11 2.40 5.98 44.99 0.27 2.67 16 8 H 0.11 2.95 7.40 -2.39 -0.02 2.93 16 9 C -0.15 -2.97 7.05 -9.90 -0.07 -3.04 16 10 H 0.14 2.10 8.14 -2.38 -0.02 2.08 16 11 C 0.06 1.30 6.30 86.45 0.54 1.84 16 12 N -0.50 -15.68 5.33 -886.04 -4.73 -20.41 16 13 C 0.04 1.31 5.55 85.56 0.47 1.79 16 14 C 0.45 20.63 7.50 87.66 0.66 21.29 16 15 O -0.60 -33.28 13.24 -3.08 -0.04 -33.32 16 16 N -0.59 -28.28 5.09 -307.00 -1.56 -29.84 16 17 C -0.33 -19.37 10.16 84.04 0.85 -18.52 16 18 H 0.06 3.99 7.39 -2.91 -0.02 3.97 16 19 C -0.01 -0.79 5.50 84.92 0.47 -0.32 16 20 N -0.93 -56.63 13.96 21.66 0.30 -56.33 16 21 Si 0.96 39.33 27.74 68.60 1.90 41.23 16 22 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 23 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 24 H -0.23 -7.97 6.52 99.48 0.65 -7.32 16 25 C 0.06 2.17 5.11 86.45 0.44 2.61 16 26 C -0.17 -4.03 7.05 -9.90 -0.07 -4.10 16 27 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 28 C -0.10 -1.38 2.51 -10.27 -0.03 -1.40 16 29 C -0.14 -2.03 7.54 31.12 0.23 -1.79 16 30 C -0.14 -1.55 8.08 31.12 0.25 -1.30 16 31 C -0.12 -1.08 6.75 31.12 0.21 -0.87 16 32 H 0.07 0.43 7.56 -2.39 -0.02 0.41 16 33 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.09 0.44 7.50 -2.39 -0.02 0.42 16 35 H 0.42 3.98 8.25 -92.70 -0.76 3.22 16 36 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.05 1.11 7.82 -2.39 -0.02 1.09 16 38 H 0.13 3.30 8.14 -2.39 -0.02 3.28 16 39 H 0.08 2.11 7.88 -2.38 -0.02 2.10 16 40 H 0.39 15.54 5.76 -92.71 -0.53 15.00 16 41 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 42 H 0.02 0.88 8.00 -2.38 -0.02 0.87 16 43 H 0.08 3.42 6.05 -2.39 -0.01 3.40 16 44 H 0.07 1.38 7.91 -2.39 -0.02 1.36 16 45 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.09 1.06 7.99 -2.39 -0.02 1.04 16 47 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.10 0.53 8.10 -2.38 -0.02 0.51 16 50 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -81.63 397.67 -1.51 -83.14 By element: Atomic # 1 Polarization: 38.73 SS G_CDS: -0.40 Total: 38.32 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 5.48 Total: 7.99 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -8.40 Total: -120.19 kcal Atomic # 8 Polarization: -50.41 SS G_CDS: -0.09 Total: -50.50 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 1.90 Total: 41.23 kcal Total: -81.63 -1.51 -83.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114449269.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.250 kcal (2) G-P(sol) polarization free energy of solvation -81.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds