Wall clock time and date at job start Tue Mar 31 2020 18:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 119.99805 * 2 1 4 4 C 1.50699 * 119.99899 * 180.02562 * 2 1 3 5 5 C 1.52990 * 109.47246 * 95.00172 * 4 2 1 6 6 H 1.09002 * 109.47337 * 304.99815 * 5 4 2 7 7 C 1.53007 * 109.47358 * 64.99488 * 5 4 2 8 8 C 1.50703 * 109.47398 * 184.99730 * 5 4 2 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 5 4 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 5 4 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 5 12 12 H 1.09004 * 115.51982 * 350.14327 * 11 10 8 13 13 C 1.53005 * 117.44191 * 204.71985 * 11 10 8 14 14 H 1.09001 * 119.52274 * 5.65060 * 13 11 10 15 15 C 1.54377 * 118.12385 * 160.68214 * 13 11 10 16 16 N 1.48556 * 104.59439 * 87.23559 * 15 13 11 17 17 C 1.46895 * 111.00170 * 200.95515 * 16 15 13 18 18 C 1.50706 * 109.47498 * 189.99874 * 17 16 15 19 19 O 1.21291 * 119.99551 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99973 * 180.02562 * 18 17 16 21 21 C 1.37107 * 119.99552 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00283 * 359.97438 * 21 20 18 23 23 C 1.38946 * 119.99663 * 179.97438 * 21 20 18 24 24 N 1.31412 * 120.00303 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99774 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46882 * 89.99891 * 25 23 21 27 27 H 1.48505 * 109.46977 * 209.99303 * 25 23 21 28 28 H 1.48499 * 109.47290 * 329.99898 * 25 23 21 29 29 C 1.48562 * 104.22048 * 320.51284 * 16 15 13 30 30 C 1.52999 * 117.44391 * 135.49708 * 11 10 8 31 31 H 1.09000 * 119.52999 * 355.89725 * 30 11 10 32 32 H 1.08003 * 119.99909 * 180.02562 * 1 2 3 33 33 H 1.08000 * 120.00557 * 359.97438 * 1 2 3 34 34 H 1.08997 * 109.47112 * 270.00548 * 3 2 1 35 35 H 1.09003 * 109.47017 * 30.00357 * 3 2 1 36 36 H 1.08998 * 109.47170 * 149.99986 * 3 2 1 37 37 H 1.08997 * 109.47249 * 334.99021 * 4 2 1 38 38 H 1.09002 * 109.46620 * 215.00081 * 4 2 1 39 39 H 1.09003 * 109.46582 * 60.00448 * 7 5 4 40 40 H 1.09001 * 109.46852 * 180.02562 * 7 5 4 41 41 H 1.08993 * 109.46731 * 300.00313 * 7 5 4 42 42 H 0.97001 * 119.99727 * 359.97438 * 10 8 5 43 43 H 1.09000 * 110.41086 * 206.00755 * 15 13 11 44 44 H 1.08996 * 110.41604 * 328.45332 * 15 13 11 45 45 H 1.08997 * 109.47417 * 310.00037 * 17 16 15 46 46 H 1.09002 * 109.47230 * 69.99642 * 17 16 15 47 47 H 0.96990 * 120.00514 * 359.97438 * 20 18 17 48 48 H 0.96996 * 120.00628 * 179.97438 * 24 23 21 49 49 H 1.09005 * 110.41117 * 158.26414 * 29 16 15 50 50 H 1.08996 * 110.40936 * 280.58341 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6833 -1.4377 6 1 1.5245 -1.7024 -2.0481 7 6 3.4045 -0.6514 -2.0048 8 6 3.0717 -3.0455 -1.4509 9 8 3.2251 -3.6538 -0.4129 10 7 3.4783 -3.5875 -2.6160 11 6 4.0991 -4.9143 -2.6295 12 1 4.3491 -5.3258 -1.6515 13 6 5.0368 -5.2423 -3.7932 14 1 5.2880 -4.4659 -4.5158 15 6 6.0360 -6.4059 -3.6169 16 7 5.2809 -7.6145 -4.0363 17 6 5.8844 -8.8321 -3.4786 18 6 5.2517 -10.0431 -4.1146 19 8 4.3831 -9.9053 -4.9499 20 7 5.6504 -11.2791 -3.7545 21 6 5.0751 -12.3808 -4.3335 22 1 4.3023 -12.2581 -5.0779 23 6 5.4864 -13.6551 -3.9626 24 7 6.4271 -13.8044 -3.0572 25 14 4.7022 -15.1560 -4.7510 26 1 5.4669 -15.5329 -5.9670 27 1 4.7166 -16.2858 -3.7873 28 1 3.2998 -14.8427 -5.1255 29 6 3.9157 -7.3992 -3.4913 30 6 3.6420 -5.8958 -3.7105 31 1 2.8345 -5.6132 -4.3859 32 1 -0.5400 -0.9353 0.0004 33 1 -0.5401 0.9353 0.0004 34 1 2.2451 1.6198 -1.0276 35 1 1.4744 2.0648 0.5139 36 1 3.0159 1.1748 0.5138 37 1 1.4387 -2.0856 0.4335 38 1 2.9742 -1.1990 0.5889 39 1 4.3074 -0.6323 -1.3944 40 1 3.6634 -0.9207 -3.0288 41 1 2.9385 0.3338 -1.9952 42 1 3.3559 -3.1008 -3.4461 43 1 6.9060 -6.2601 -4.2572 44 1 6.3405 -6.4908 -2.5738 45 1 6.9553 -8.8328 -3.6818 46 1 5.7190 -8.8592 -2.4016 47 1 6.3447 -11.3894 -3.0863 48 1 6.7141 -14.6940 -2.7980 49 1 3.1892 -8.0015 -4.0370 50 1 3.8879 -7.6417 -2.4290 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114712320.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:04 Heat of formation + Delta-G solvation = -22.601463 kcal Electronic energy + Delta-G solvation = -28028.201306 eV Core-core repulsion = 24056.600594 eV Total energy + Delta-G solvation = -3971.600713 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.65423 -39.61003 -37.95606 -37.13706 -35.17834 -33.88567 -33.42991 -32.16602 -31.16160 -28.34791 -28.32832 -27.62305 -26.81655 -24.94202 -24.04495 -22.16820 -21.04604 -20.33748 -20.19616 -19.09559 -18.76024 -17.82545 -17.38078 -17.01601 -15.94323 -15.90155 -15.34561 -15.05348 -14.90770 -14.63590 -14.50863 -14.37395 -14.00511 -13.78041 -13.63429 -13.44706 -13.38688 -12.89247 -12.74581 -12.48843 -12.44599 -12.07810 -12.02392 -11.91925 -11.68726 -11.47329 -11.44421 -11.41105 -11.31208 -11.27884 -11.03390 -10.77009 -10.37436 -10.19675 -10.14154 -10.04723 -9.46672 -9.39984 -8.96070 -8.48835 -8.00119 -7.91866 -6.38601 -3.79389 1.78396 2.28332 2.70291 3.20007 3.28343 3.34221 3.57523 3.93412 4.01583 4.15894 4.26791 4.38252 4.43673 4.55318 4.59099 4.66827 4.69059 4.80404 4.88736 5.01007 5.09368 5.11407 5.20486 5.26695 5.27652 5.27847 5.30928 5.43040 5.52138 5.54548 5.56080 5.62700 5.70258 5.76373 5.76779 5.79361 5.85658 6.01231 6.01528 6.23096 6.27001 6.30260 6.39140 6.46401 7.06093 7.16214 7.20435 7.58036 7.91551 8.09363 8.65303 9.21399 9.57943 10.10050 10.79262 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028549 B = 0.001671 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.550429 B =16752.515824 C =17098.864726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.124 4.124 3 C -0.122 4.122 4 C -0.068 4.068 5 C -0.102 4.102 6 H 0.099 0.901 7 C -0.150 4.150 8 C 0.521 3.479 9 O -0.535 6.535 10 N -0.699 5.699 11 C 0.103 3.897 12 H 0.133 0.867 13 C -0.167 4.167 14 H 0.119 0.881 15 C 0.060 3.940 16 N -0.483 5.483 17 C 0.034 3.966 18 C 0.446 3.554 19 O -0.577 6.577 20 N -0.566 5.566 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.069 3.931 30 C -0.162 4.162 31 H 0.118 0.882 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.402 0.598 43 H 0.088 0.912 44 H 0.046 0.954 45 H 0.090 0.910 46 H 0.052 0.948 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.103 0.897 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.969 29.702 4.583 30.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.124 4.124 3 C -0.179 4.179 4 C -0.106 4.106 5 C -0.124 4.124 6 H 0.117 0.883 7 C -0.208 4.208 8 C 0.307 3.693 9 O -0.410 6.410 10 N -0.348 5.348 11 C -0.003 4.003 12 H 0.151 0.849 13 C -0.187 4.187 14 H 0.136 0.864 15 C -0.068 4.068 16 N -0.206 5.206 17 C -0.098 4.098 18 C 0.231 3.769 19 O -0.460 6.460 20 N -0.203 5.203 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.195 1.195 29 C -0.059 4.059 30 C -0.182 4.182 31 H 0.136 0.864 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.236 0.764 43 H 0.106 0.894 44 H 0.064 0.936 45 H 0.108 0.892 46 H 0.070 0.930 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.121 0.879 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.354 29.089 4.283 29.886 hybrid contribution 0.091 -0.644 0.386 0.757 sum -5.263 28.445 4.669 29.302 Atomic orbital electron populations 1.23748 0.95265 1.01979 1.02202 1.21721 0.95342 0.95581 0.99755 1.21008 1.00310 0.94489 1.02062 1.20517 1.00979 0.94489 0.94589 1.21289 0.99968 0.91902 0.99220 0.88306 1.21964 0.98993 0.99004 1.00796 1.20697 0.77756 0.87574 0.83226 1.90724 1.55105 1.63184 1.32013 1.45313 1.61654 1.18045 1.09770 1.21818 0.98547 0.83773 0.96198 0.84949 1.23810 0.92886 1.00497 1.01510 0.86355 1.22659 0.96232 0.88605 0.99297 1.65289 1.01265 1.00117 1.53974 1.22066 0.99864 0.90759 0.97128 1.19681 0.86775 0.83823 0.86610 1.90508 1.34079 1.85821 1.35638 1.41856 1.36171 1.04254 1.38010 1.19697 1.18989 0.83374 1.20701 0.87938 1.25249 0.96754 0.99106 0.96851 1.69612 1.29356 1.24177 1.31262 0.85863 0.79556 0.80347 0.78541 1.20426 1.20972 1.19464 1.22655 0.92636 0.92429 0.98198 1.24005 0.98148 0.93561 1.02501 0.86416 0.88388 0.88462 0.91149 0.91967 0.91694 0.90300 0.90451 0.91868 0.92195 0.90624 0.76353 0.89361 0.93627 0.89160 0.93008 0.77517 0.91920 0.87915 0.93898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.19 13.89 29.01 0.40 -0.79 16 2 C -0.12 -0.77 4.94 -101.07 -0.50 -1.27 16 3 C -0.12 -0.58 9.01 36.01 0.32 -0.25 16 4 C -0.07 -0.52 4.22 -27.89 -0.12 -0.64 16 5 C -0.10 -0.70 2.71 -91.77 -0.25 -0.95 16 6 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 7 C -0.15 -0.74 8.64 37.16 0.32 -0.42 16 8 C 0.52 5.28 7.15 -10.98 -0.08 5.21 16 9 O -0.53 -7.71 15.49 5.55 0.09 -7.62 16 10 N -0.70 -6.16 5.46 -53.80 -0.29 -6.45 16 11 C 0.10 1.15 5.97 -67.93 -0.41 0.74 16 12 H 0.13 1.75 7.40 -51.93 -0.38 1.37 16 13 C -0.17 -1.83 7.05 -89.24 -0.63 -2.46 16 14 H 0.12 1.08 8.14 -51.93 -0.42 0.65 16 15 C 0.06 0.77 6.26 -2.19 -0.01 0.76 16 16 N -0.48 -8.13 4.98 -231.41 -1.15 -9.28 16 17 C 0.03 0.61 5.32 -4.98 -0.03 0.58 16 18 C 0.45 10.68 7.63 -10.98 -0.08 10.60 16 19 O -0.58 -15.78 14.80 5.55 0.08 -15.70 16 20 N -0.57 -14.53 5.29 -10.96 -0.06 -14.59 16 21 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.80 13.05 55.50 0.72 -24.07 16 25 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 29 C 0.07 1.10 5.73 -2.18 -0.01 1.09 16 30 C -0.16 -2.01 7.05 -89.24 -0.63 -2.64 16 31 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.10 0.61 7.99 -52.48 -0.42 0.19 16 33 H 0.10 0.50 8.04 -52.49 -0.42 0.07 16 34 H 0.07 0.27 6.39 -51.93 -0.33 -0.07 16 35 H 0.06 0.27 8.06 -51.93 -0.42 -0.15 16 36 H 0.06 0.30 8.08 -51.93 -0.42 -0.12 16 37 H 0.08 0.72 7.80 -51.93 -0.41 0.31 16 38 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.23 7.56 -51.93 -0.39 -0.16 16 41 H 0.08 0.30 5.08 -51.93 -0.26 0.04 16 42 H 0.40 2.41 8.24 -40.82 -0.34 2.08 16 43 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.05 0.56 8.00 -51.93 -0.42 0.14 16 45 H 0.09 1.47 8.08 -51.93 -0.42 1.05 16 46 H 0.05 0.87 7.77 -51.93 -0.40 0.46 16 47 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 48 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 49 H 0.10 1.94 7.24 -51.93 -0.38 1.56 16 50 H 0.04 0.69 7.75 -51.93 -0.40 0.28 16 LS Contribution 406.32 15.07 6.12 6.12 Total: -1.00 -33.63 406.32 -9.62 -43.25 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -8.18 Total: 10.58 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -1.94 Total: 1.51 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.78 Total: -54.40 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: 0.17 Total: -23.32 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.63 -9.62 -43.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114712320.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.652 kcal (2) G-P(sol) polarization free energy of solvation -33.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds