Wall clock time and date at job start Tue Mar 31 2020 18:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 119.99805 * 2 1 4 4 C 1.50699 * 119.99899 * 180.02562 * 2 1 3 5 5 C 1.52990 * 109.47246 * 95.00172 * 4 2 1 6 6 H 1.09002 * 109.47337 * 304.99815 * 5 4 2 7 7 C 1.53007 * 109.47358 * 64.99488 * 5 4 2 8 8 C 1.50703 * 109.47398 * 184.99730 * 5 4 2 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 5 4 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 5 4 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 5 12 12 H 1.09004 * 115.51982 * 350.14327 * 11 10 8 13 13 C 1.53005 * 117.44191 * 204.71985 * 11 10 8 14 14 H 1.09001 * 119.52274 * 5.65060 * 13 11 10 15 15 C 1.54377 * 118.12385 * 160.68214 * 13 11 10 16 16 N 1.48556 * 104.59439 * 87.23559 * 15 13 11 17 17 C 1.46895 * 111.00170 * 200.95515 * 16 15 13 18 18 C 1.50706 * 109.47498 * 189.99874 * 17 16 15 19 19 O 1.21291 * 119.99551 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99973 * 180.02562 * 18 17 16 21 21 C 1.37107 * 119.99552 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00283 * 359.97438 * 21 20 18 23 23 C 1.38946 * 119.99663 * 179.97438 * 21 20 18 24 24 N 1.31412 * 120.00303 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99774 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46882 * 89.99891 * 25 23 21 27 27 H 1.48505 * 109.46977 * 209.99303 * 25 23 21 28 28 H 1.48499 * 109.47290 * 329.99898 * 25 23 21 29 29 C 1.48562 * 104.22048 * 320.51284 * 16 15 13 30 30 C 1.52999 * 117.44391 * 135.49708 * 11 10 8 31 31 H 1.09000 * 119.52999 * 355.89725 * 30 11 10 32 32 H 1.08003 * 119.99909 * 180.02562 * 1 2 3 33 33 H 1.08000 * 120.00557 * 359.97438 * 1 2 3 34 34 H 1.08997 * 109.47112 * 270.00548 * 3 2 1 35 35 H 1.09003 * 109.47017 * 30.00357 * 3 2 1 36 36 H 1.08998 * 109.47170 * 149.99986 * 3 2 1 37 37 H 1.08997 * 109.47249 * 334.99021 * 4 2 1 38 38 H 1.09002 * 109.46620 * 215.00081 * 4 2 1 39 39 H 1.09003 * 109.46582 * 60.00448 * 7 5 4 40 40 H 1.09001 * 109.46852 * 180.02562 * 7 5 4 41 41 H 1.08993 * 109.46731 * 300.00313 * 7 5 4 42 42 H 0.97001 * 119.99727 * 359.97438 * 10 8 5 43 43 H 1.09000 * 110.41086 * 206.00755 * 15 13 11 44 44 H 1.08996 * 110.41604 * 328.45332 * 15 13 11 45 45 H 1.08997 * 109.47417 * 310.00037 * 17 16 15 46 46 H 1.09002 * 109.47230 * 69.99642 * 17 16 15 47 47 H 0.96990 * 120.00514 * 359.97438 * 20 18 17 48 48 H 0.96996 * 120.00628 * 179.97438 * 24 23 21 49 49 H 1.09005 * 110.41117 * 158.26414 * 29 16 15 50 50 H 1.08996 * 110.40936 * 280.58341 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6833 -1.4377 6 1 1.5245 -1.7024 -2.0481 7 6 3.4045 -0.6514 -2.0048 8 6 3.0717 -3.0455 -1.4509 9 8 3.2251 -3.6538 -0.4129 10 7 3.4783 -3.5875 -2.6160 11 6 4.0991 -4.9143 -2.6295 12 1 4.3491 -5.3258 -1.6515 13 6 5.0368 -5.2423 -3.7932 14 1 5.2880 -4.4659 -4.5158 15 6 6.0360 -6.4059 -3.6169 16 7 5.2809 -7.6145 -4.0363 17 6 5.8844 -8.8321 -3.4786 18 6 5.2517 -10.0431 -4.1146 19 8 4.3831 -9.9053 -4.9499 20 7 5.6504 -11.2791 -3.7545 21 6 5.0751 -12.3808 -4.3335 22 1 4.3023 -12.2581 -5.0779 23 6 5.4864 -13.6551 -3.9626 24 7 6.4271 -13.8044 -3.0572 25 14 4.7022 -15.1560 -4.7510 26 1 5.4669 -15.5329 -5.9670 27 1 4.7166 -16.2858 -3.7873 28 1 3.2998 -14.8427 -5.1255 29 6 3.9157 -7.3992 -3.4913 30 6 3.6420 -5.8958 -3.7105 31 1 2.8345 -5.6132 -4.3859 32 1 -0.5400 -0.9353 0.0004 33 1 -0.5401 0.9353 0.0004 34 1 2.2451 1.6198 -1.0276 35 1 1.4744 2.0648 0.5139 36 1 3.0159 1.1748 0.5138 37 1 1.4387 -2.0856 0.4335 38 1 2.9742 -1.1990 0.5889 39 1 4.3074 -0.6323 -1.3944 40 1 3.6634 -0.9207 -3.0288 41 1 2.9385 0.3338 -1.9952 42 1 3.3559 -3.1008 -3.4461 43 1 6.9060 -6.2601 -4.2572 44 1 6.3405 -6.4908 -2.5738 45 1 6.9553 -8.8328 -3.6818 46 1 5.7190 -8.8592 -2.4016 47 1 6.3447 -11.3894 -3.0863 48 1 6.7141 -14.6940 -2.7980 49 1 3.1892 -8.0015 -4.0370 50 1 3.8879 -7.6417 -2.4290 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114712320.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:04 Heat of formation + Delta-G solvation = -46.614274 kcal Electronic energy + Delta-G solvation = -28029.242580 eV Core-core repulsion = 24056.600594 eV Total energy + Delta-G solvation = -3972.641986 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.59981 -40.68037 -39.70695 -37.75137 -36.38611 -35.79529 -34.24433 -33.30530 -32.92316 -29.45647 -29.11797 -28.74123 -27.29945 -26.63166 -25.04534 -23.30893 -22.02458 -21.40279 -21.00515 -20.90635 -19.86867 -19.26466 -18.19638 -17.88775 -17.62670 -16.69765 -16.59292 -16.44795 -16.18682 -15.81164 -15.54163 -15.42823 -14.97697 -14.91391 -14.82641 -14.52559 -14.19616 -14.01551 -13.87488 -13.55714 -13.39669 -13.19520 -13.13457 -12.95485 -12.84468 -12.52800 -12.46688 -12.43905 -12.41117 -12.16511 -12.12736 -11.97520 -11.90176 -11.83880 -11.49251 -11.12211 -10.88191 -10.33459 -10.01412 -9.88550 -9.83654 -9.39654 -8.46775 -5.95688 1.30181 1.37573 1.40895 1.47833 1.53856 1.90862 2.04969 2.28253 2.62909 2.81204 3.19681 3.34800 3.50127 3.62309 3.66057 3.81421 3.87407 3.92094 4.06421 4.14859 4.22544 4.24069 4.27801 4.38573 4.39678 4.48734 4.51647 4.60378 4.67740 4.73947 4.79052 4.88285 4.89323 4.90639 5.01209 5.08442 5.09642 5.11046 5.16796 5.18044 5.40155 5.40315 5.42511 5.76949 5.78617 5.85166 5.99998 6.06098 6.45571 6.60330 7.12620 7.16797 7.55918 8.11981 8.70729 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028549 B = 0.001671 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.550429 B =16752.515824 C =17098.864726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.067 4.067 5 C -0.093 4.093 6 H 0.116 0.884 7 C -0.147 4.147 8 C 0.518 3.482 9 O -0.583 6.583 10 N -0.684 5.684 11 C 0.112 3.888 12 H 0.111 0.889 13 C -0.144 4.144 14 H 0.150 0.850 15 C 0.057 3.943 16 N -0.503 5.503 17 C 0.046 3.954 18 C 0.442 3.558 19 O -0.616 6.616 20 N -0.575 5.575 21 C -0.334 4.334 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.270 1.270 27 H -0.271 1.271 28 H -0.274 1.274 29 C 0.067 3.933 30 C -0.170 4.170 31 H 0.129 0.871 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.420 0.580 43 H 0.106 0.894 44 H 0.054 0.946 45 H 0.115 0.885 46 H 0.067 0.933 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.065 0.935 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.409 31.924 3.830 32.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.126 4.126 3 C -0.178 4.178 4 C -0.105 4.105 5 C -0.115 4.115 6 H 0.134 0.866 7 C -0.204 4.204 8 C 0.306 3.694 9 O -0.463 6.463 10 N -0.334 5.334 11 C 0.004 3.996 12 H 0.128 0.872 13 C -0.164 4.164 14 H 0.167 0.833 15 C -0.070 4.070 16 N -0.228 5.228 17 C -0.086 4.086 18 C 0.229 3.771 19 O -0.501 6.501 20 N -0.213 5.213 21 C -0.463 4.463 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.195 1.195 27 H -0.195 1.195 28 H -0.199 1.199 29 C -0.061 4.061 30 C -0.191 4.191 31 H 0.147 0.853 32 H 0.110 0.890 33 H 0.128 0.872 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.258 0.742 43 H 0.124 0.876 44 H 0.072 0.928 45 H 0.133 0.867 46 H 0.085 0.915 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.083 0.917 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.774 31.348 3.515 31.904 hybrid contribution -0.099 -1.324 0.652 1.479 sum -4.873 30.024 4.167 30.701 Atomic orbital electron populations 1.23854 0.95347 1.02357 1.02057 1.21741 0.95388 0.95510 0.99955 1.21031 1.00097 0.93584 1.03066 1.20463 1.00241 0.94785 0.95044 1.21297 1.00822 0.90288 0.99044 0.86640 1.21980 0.98112 0.98907 1.01392 1.21353 0.76970 0.88415 0.82641 1.90709 1.57116 1.64632 1.33815 1.45182 1.60768 1.17038 1.10398 1.21529 0.98560 0.84411 0.95061 0.87152 1.23889 0.91056 1.00075 1.01354 0.83284 1.22781 0.96718 0.87326 1.00185 1.65236 1.01931 1.00960 1.54650 1.21920 1.00506 0.88857 0.97296 1.20722 0.85827 0.84840 0.85669 1.90477 1.35722 1.86590 1.37353 1.41927 1.36478 1.04552 1.38314 1.19665 1.19872 0.85071 1.21713 0.90351 1.26040 0.96943 1.01261 0.97025 1.69673 1.29721 1.25211 1.31587 0.84921 0.78357 0.76924 0.78073 1.19523 1.19539 1.19864 1.22503 0.91885 0.94694 0.97005 1.23847 0.99910 0.91356 1.03978 0.85310 0.89019 0.87164 0.89715 0.91386 0.91763 0.92546 0.91568 0.92602 0.90460 0.89191 0.74246 0.87575 0.92817 0.86746 0.91489 0.77061 0.91317 0.91673 0.94589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.21 13.89 67.78 0.94 -1.26 16 2 C -0.13 -1.41 4.94 -16.49 -0.08 -1.50 16 3 C -0.12 -0.89 9.01 71.24 0.64 -0.25 16 4 C -0.07 -1.01 4.22 29.84 0.13 -0.89 16 5 C -0.09 -1.13 2.71 -11.54 -0.03 -1.16 16 6 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 7 C -0.15 -1.03 8.64 71.98 0.62 -0.41 16 8 C 0.52 10.05 7.15 87.66 0.63 10.68 16 9 O -0.58 -17.18 15.49 -3.04 -0.05 -17.23 16 10 N -0.68 -10.69 5.46 -442.52 -2.41 -13.11 16 11 C 0.11 2.34 5.97 44.99 0.27 2.61 16 12 H 0.11 2.91 7.40 -2.38 -0.02 2.89 16 13 C -0.14 -2.77 7.05 -9.90 -0.07 -2.84 16 14 H 0.15 2.02 8.14 -2.39 -0.02 2.00 16 15 C 0.06 1.33 6.26 86.45 0.54 1.87 16 16 N -0.50 -16.70 4.98 -886.06 -4.41 -21.11 16 17 C 0.05 1.65 5.32 85.56 0.46 2.10 16 18 C 0.44 21.76 7.63 87.66 0.67 22.42 16 19 O -0.62 -35.04 14.80 -3.06 -0.05 -35.08 16 20 N -0.58 -30.33 5.29 -306.98 -1.62 -31.95 16 21 C -0.33 -19.37 9.68 84.04 0.81 -18.56 16 22 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 23 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 24 N -0.92 -50.53 13.05 21.66 0.28 -50.25 16 25 Si 0.99 43.69 29.55 68.60 2.03 45.72 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 28 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 29 C 0.07 2.22 5.73 86.45 0.50 2.71 16 30 C -0.17 -4.08 7.05 -9.90 -0.07 -4.15 16 31 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.09 1.10 7.99 -2.91 -0.02 1.08 16 33 H 0.11 0.92 8.04 -2.91 -0.02 0.90 16 34 H 0.08 0.38 6.39 -2.39 -0.02 0.37 16 35 H 0.07 0.44 8.06 -2.39 -0.02 0.42 16 36 H 0.06 0.49 8.08 -2.39 -0.02 0.47 16 37 H 0.06 1.08 7.80 -2.39 -0.02 1.06 16 38 H 0.07 1.12 8.10 -2.39 -0.02 1.10 16 39 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.08 0.30 7.56 -2.39 -0.02 0.28 16 41 H 0.09 0.41 5.08 -2.39 -0.01 0.40 16 42 H 0.42 3.65 8.24 -92.71 -0.76 2.88 16 43 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.05 1.19 8.00 -2.39 -0.02 1.17 16 45 H 0.11 3.56 8.08 -2.39 -0.02 3.54 16 46 H 0.07 2.22 7.77 -2.39 -0.02 2.20 16 47 H 0.40 19.81 7.90 -92.72 -0.73 19.08 16 48 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 49 H 0.06 2.61 7.24 -2.38 -0.02 2.60 16 50 H 0.04 1.20 7.75 -2.39 -0.02 1.18 16 Total: -1.00 -75.92 406.32 -0.36 -76.27 By element: Atomic # 1 Polarization: 36.13 SS G_CDS: -0.54 Total: 35.59 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 6.42 Total: 11.14 kcal Atomic # 7 Polarization: -108.25 SS G_CDS: -8.16 Total: -116.42 kcal Atomic # 8 Polarization: -52.22 SS G_CDS: -0.09 Total: -52.31 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -75.92 -0.36 -76.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114712320.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.658 kcal (2) G-P(sol) polarization free energy of solvation -75.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds