Wall clock time and date at job start Tue Mar 31 2020 19:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.50704 * 109.47295 * 65.00435 * 4 2 1 6 6 O 1.21279 * 119.99596 * 359.97438 * 5 4 2 7 7 N 1.34778 * 120.00129 * 179.97438 * 5 4 2 8 8 C 1.46502 * 119.99830 * 179.97438 * 7 5 4 9 9 H 1.09001 * 115.51835 * 350.58489 * 8 7 5 10 10 C 1.52998 * 117.44272 * 205.15894 * 8 7 5 11 11 H 1.09000 * 119.52649 * 4.10016 * 10 8 7 12 12 C 1.54376 * 118.12413 * 159.13295 * 10 8 7 13 13 N 1.52010 * 102.91834 * 88.06716 * 12 10 8 14 14 C 1.46902 * 110.70528 * 200.88440 * 13 12 10 15 15 C 1.50701 * 109.47250 * 305.50630 * 14 13 12 16 16 O 1.21296 * 119.99856 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00348 * 180.02562 * 15 14 13 18 18 C 1.37092 * 120.00100 * 179.97438 * 17 15 14 19 19 H 1.08002 * 119.99679 * 0.02562 * 18 17 15 20 20 C 1.38952 * 119.99738 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00269 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99670 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47335 * 90.00374 * 22 20 18 24 24 H 1.48497 * 109.46843 * 210.00460 * 22 20 18 25 25 H 1.48499 * 109.47269 * 330.00071 * 22 20 18 26 26 C 1.48559 * 104.44093 * 320.41430 * 13 12 10 27 27 C 1.53000 * 117.43995 * 136.00299 * 8 7 5 28 28 H 1.09000 * 119.52560 * 355.90714 * 27 8 7 29 29 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 30 30 C 1.52996 * 117.49930 * 248.74579 * 29 2 1 31 31 C 1.53005 * 117.49949 * 180.08390 * 29 2 1 32 32 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 33 33 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 34 34 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.46738 * 184.99930 * 4 2 1 36 36 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 37 37 H 0.97003 * 119.99614 * 359.97438 * 7 5 4 38 38 H 1.09004 * 110.40803 * 206.01077 * 12 10 8 39 39 H 1.08999 * 110.41671 * 328.45377 * 12 10 8 40 40 H 1.08995 * 109.47394 * 65.50963 * 14 13 12 41 41 H 1.09010 * 109.47058 * 185.50874 * 14 13 12 42 42 H 0.97005 * 119.99318 * 0.02562 * 17 15 14 43 43 H 0.96994 * 119.99731 * 179.97438 * 21 20 18 44 44 H 1.09000 * 110.41449 * 280.92963 * 26 13 12 45 45 H 1.08998 * 110.41231 * 158.48163 * 26 13 12 46 46 H 1.09007 * 115.55242 * 34.41619 * 29 2 1 47 47 H 1.09002 * 117.49978 * 359.97438 * 30 29 2 48 48 H 1.08999 * 117.49879 * 145.02328 * 30 29 2 49 49 H 1.08994 * 117.49920 * 214.98035 * 31 29 2 50 50 H 1.09002 * 117.49617 * 359.97438 * 31 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 8 1.0110 1.0870 -2.3633 7 7 1.9852 -0.3914 -3.7002 8 6 1.5972 0.3650 -4.8933 9 1 0.9010 1.1862 -4.7229 10 6 1.4674 -0.4083 -6.2071 11 1 1.5972 -1.4905 -6.2086 12 6 0.6149 0.2114 -7.3351 13 7 1.6160 1.0794 -8.0801 14 6 0.9259 2.1144 -8.8614 15 6 -0.0891 1.4666 -9.7676 16 8 -0.2246 0.2613 -9.7627 17 7 -0.8463 2.2265 -10.5835 18 6 -1.7693 1.6371 -11.4082 19 1 -1.8899 0.5639 -11.4038 20 6 -2.5503 2.4207 -12.2490 21 7 -2.4038 3.7266 -12.2539 22 14 -3.8084 1.6176 -13.3722 23 1 -5.1105 1.5173 -12.6654 24 1 -3.9728 2.4390 -14.5984 25 1 -3.3420 0.2582 -13.7459 26 6 2.4483 1.6867 -7.0099 27 6 2.6532 0.5508 -5.9847 28 1 3.6659 0.1826 -5.8205 29 6 2.0401 -0.7212 1.2492 30 6 2.7394 0.1231 2.3164 31 6 3.5551 -0.8264 1.4353 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 3.1263 -0.7995 -1.2056 36 1 1.6053 -1.7198 -1.2952 37 1 2.4897 -1.2150 -3.7907 38 1 0.2250 -0.5686 -7.9891 39 1 -0.2011 0.7999 -6.9155 40 1 0.4212 2.8042 -8.1850 41 1 1.6527 2.6613 -9.4622 42 1 -0.7376 3.1905 -10.5876 43 1 -2.9488 4.2735 -12.8411 44 1 1.9240 2.5242 -6.5496 45 1 3.4072 2.0126 -7.4129 46 1 1.4319 -1.5595 1.5894 47 1 2.8365 1.1924 2.1283 48 1 2.5916 -0.1599 3.3586 49 1 3.9436 -1.7334 1.8981 50 1 4.1885 -0.3820 0.6674 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115311473.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:14 Heat of formation + Delta-G solvation = -12.651526 kcal Electronic energy + Delta-G solvation = -28099.161558 eV Core-core repulsion = 24127.992308 eV Total energy + Delta-G solvation = -3971.169251 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.52370 -39.53811 -38.22745 -37.80309 -35.05614 -33.89685 -33.47891 -32.52434 -31.22923 -28.53395 -28.19611 -27.23518 -24.73740 -23.92868 -22.79529 -22.34518 -21.02207 -20.80009 -20.17988 -19.89366 -19.13352 -17.83002 -17.31013 -17.00007 -16.08936 -15.84121 -15.46905 -15.19615 -15.07473 -14.76518 -14.52118 -14.17650 -13.80417 -13.65644 -13.46820 -13.42276 -13.28129 -12.88650 -12.53671 -12.26145 -12.06095 -11.98792 -11.79221 -11.69495 -11.58903 -11.54944 -11.24723 -11.22530 -11.16312 -10.97886 -10.80858 -10.60418 -10.38929 -10.37053 -10.22804 -10.07207 -9.90325 -9.49831 -8.89386 -8.40435 -8.04993 -7.93742 -6.42063 -3.82947 2.34006 2.73419 3.17720 3.26587 3.32319 3.38138 3.65088 3.88829 4.05503 4.17266 4.25808 4.38476 4.47829 4.56693 4.61902 4.65771 4.73763 4.83503 4.86512 5.01667 5.06617 5.13142 5.21498 5.24747 5.25568 5.30633 5.37095 5.45668 5.49436 5.58535 5.68712 5.70922 5.73426 5.76328 5.79414 5.82773 5.93274 6.02362 6.06734 6.11411 6.19250 6.26108 6.35865 6.62712 7.02248 7.22567 7.23754 7.54944 7.98526 8.05400 8.60899 9.17332 9.53318 10.04764 10.75586 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024532 B = 0.001730 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.080673 B =16180.852021 C =16648.833472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.044 4.044 3 H 0.079 0.921 4 C -0.134 4.134 5 C 0.516 3.484 6 O -0.533 6.533 7 N -0.701 5.701 8 C 0.102 3.898 9 H 0.133 0.867 10 C -0.163 4.163 11 H 0.116 0.884 12 C 0.066 3.934 13 N -0.485 5.485 14 C 0.031 3.969 15 C 0.443 3.557 16 O -0.581 6.581 17 N -0.561 5.561 18 C -0.300 4.300 19 H 0.104 0.896 20 C 0.023 3.977 21 N -0.901 5.901 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.060 3.940 27 C -0.169 4.169 28 H 0.116 0.884 29 C -0.149 4.149 30 C -0.178 4.178 31 C -0.183 4.183 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.049 0.951 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.402 0.598 38 H 0.121 0.879 39 H 0.046 0.954 40 H 0.050 0.950 41 H 0.091 0.909 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.045 0.955 45 H 0.086 0.914 46 H 0.105 0.895 47 H 0.094 0.906 48 H 0.093 0.907 49 H 0.093 0.907 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.340 -7.023 25.055 28.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.063 4.063 3 H 0.097 0.903 4 C -0.174 4.174 5 C 0.303 3.697 6 O -0.409 6.409 7 N -0.350 5.350 8 C -0.005 4.005 9 H 0.150 0.850 10 C -0.184 4.184 11 H 0.134 0.866 12 C -0.061 4.061 13 N -0.210 5.210 14 C -0.101 4.101 15 C 0.228 3.772 16 O -0.466 6.466 17 N -0.198 5.198 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.542 5.542 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.069 4.069 27 C -0.190 4.190 28 H 0.134 0.866 29 C -0.167 4.167 30 C -0.215 4.215 31 C -0.220 4.220 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.236 0.764 38 H 0.139 0.861 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.110 0.890 42 H 0.226 0.774 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.105 0.895 46 H 0.123 0.877 47 H 0.113 0.887 48 H 0.111 0.889 49 H 0.112 0.888 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.000 -7.232 24.626 28.333 hybrid contribution -0.632 0.350 -0.154 0.739 sum 11.368 -6.881 24.472 27.847 Atomic orbital electron populations 1.21931 0.94117 1.01577 1.03248 1.20460 0.96672 0.98820 0.90335 0.90294 1.21744 1.03007 1.00377 0.92290 1.20759 0.78871 0.85729 0.84345 1.90690 1.39276 1.24510 1.86413 1.45374 1.57537 1.27128 1.05007 1.21844 1.00102 0.98048 0.80486 0.84989 1.24015 1.00599 0.98360 0.95396 0.86609 1.23449 0.92061 0.98235 0.92310 1.66440 1.18364 1.17320 1.18861 1.22103 0.97036 0.93850 0.97101 1.19682 0.84815 0.87836 0.84850 1.90448 1.71277 1.14223 1.70666 1.41850 1.33377 1.09284 1.35242 1.19705 1.12932 0.94341 1.15956 0.87864 1.25269 0.98872 0.95316 0.98450 1.69612 1.41074 1.03897 1.39605 0.85851 0.80266 0.79023 0.79112 1.20433 1.20920 1.19402 1.22654 0.99111 0.94359 0.90746 1.23875 0.95438 0.99986 0.99695 0.86600 1.22410 0.94660 1.01981 0.97669 1.23021 1.04506 0.97752 0.96257 1.22977 0.93873 1.01844 1.03327 0.92726 0.90465 0.93229 0.88796 0.88662 0.76415 0.86076 0.93594 0.93224 0.89044 0.77432 0.91849 0.93690 0.89548 0.87726 0.88718 0.88899 0.88847 0.88777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.92 37.16 0.33 -0.98 16 2 C -0.04 -0.33 2.19 -90.62 -0.20 -0.53 16 3 H 0.08 0.72 7.71 -51.93 -0.40 0.32 16 4 C -0.13 -0.89 5.09 -27.88 -0.14 -1.03 16 5 C 0.52 5.21 7.55 -10.98 -0.08 5.12 16 6 O -0.53 -7.49 13.53 5.56 0.08 -7.41 16 7 N -0.70 -6.36 5.56 -53.80 -0.30 -6.66 16 8 C 0.10 1.19 5.97 -67.93 -0.41 0.78 16 9 H 0.13 1.84 7.40 -51.93 -0.38 1.46 16 10 C -0.16 -2.08 6.95 -89.31 -0.62 -2.70 16 11 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 12 C 0.07 1.11 5.26 -0.19 0.00 1.11 16 13 N -0.49 -8.22 5.38 -228.26 -1.23 -9.45 16 14 C 0.03 0.56 5.61 -4.97 -0.03 0.54 16 15 C 0.44 10.42 7.49 -10.98 -0.08 10.34 16 16 O -0.58 -15.32 13.24 5.54 0.07 -15.25 16 17 N -0.56 -14.25 5.29 -10.96 -0.06 -14.30 16 18 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 19 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 22 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 26 C 0.06 0.79 6.31 -2.18 -0.01 0.78 16 27 C -0.17 -1.96 7.05 -89.31 -0.63 -2.59 16 28 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 29 C -0.15 -0.91 5.15 -90.62 -0.47 -1.37 16 30 C -0.18 -1.05 10.18 -26.69 -0.27 -1.32 16 31 C -0.18 -0.98 9.68 -26.69 -0.26 -1.24 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.86 5.95 -51.93 -0.31 0.56 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.46 7.13 -51.93 -0.37 0.09 16 36 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.40 2.47 8.83 -40.82 -0.36 2.11 16 38 H 0.12 2.40 6.14 -51.93 -0.32 2.08 16 39 H 0.05 0.80 8.08 -51.93 -0.42 0.38 16 40 H 0.05 0.84 7.88 -51.93 -0.41 0.43 16 41 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 42 H 0.39 9.57 7.90 -40.82 -0.32 9.24 16 43 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.04 0.59 7.82 -51.93 -0.41 0.18 16 45 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.10 0.59 8.11 -51.93 -0.42 0.17 16 47 H 0.09 0.58 8.05 -51.93 -0.42 0.16 16 48 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.09 0.49 7.59 -51.93 -0.39 0.09 16 LS Contribution 402.83 15.07 6.07 6.07 Total: -1.00 -32.23 402.83 -11.02 -43.26 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -8.25 Total: 12.61 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -3.11 Total: -1.07 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: -0.86 Total: -54.24 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: 0.15 Total: -22.66 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.23 -11.02 -43.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115311473.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.606 kcal (2) G-P(sol) polarization free energy of solvation -32.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds