Wall clock time and date at job start Tue Mar 31 2020 19:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.50704 * 109.47295 * 65.00435 * 4 2 1 6 6 O 1.21279 * 119.99596 * 359.97438 * 5 4 2 7 7 N 1.34778 * 120.00129 * 179.97438 * 5 4 2 8 8 C 1.46502 * 119.99830 * 179.97438 * 7 5 4 9 9 H 1.09001 * 115.51835 * 350.58489 * 8 7 5 10 10 C 1.52998 * 117.44272 * 205.15894 * 8 7 5 11 11 H 1.09000 * 119.52649 * 4.10016 * 10 8 7 12 12 C 1.54376 * 118.12413 * 159.13295 * 10 8 7 13 13 N 1.52010 * 102.91834 * 88.06716 * 12 10 8 14 14 C 1.46902 * 110.70528 * 200.88440 * 13 12 10 15 15 C 1.50701 * 109.47250 * 305.50630 * 14 13 12 16 16 O 1.21296 * 119.99856 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00348 * 180.02562 * 15 14 13 18 18 C 1.37092 * 120.00100 * 179.97438 * 17 15 14 19 19 H 1.08002 * 119.99679 * 0.02562 * 18 17 15 20 20 C 1.38952 * 119.99738 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00269 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99670 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47335 * 90.00374 * 22 20 18 24 24 H 1.48497 * 109.46843 * 210.00460 * 22 20 18 25 25 H 1.48499 * 109.47269 * 330.00071 * 22 20 18 26 26 C 1.48559 * 104.44093 * 320.41430 * 13 12 10 27 27 C 1.53000 * 117.43995 * 136.00299 * 8 7 5 28 28 H 1.09000 * 119.52560 * 355.90714 * 27 8 7 29 29 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 30 30 C 1.52996 * 117.49930 * 248.74579 * 29 2 1 31 31 C 1.53005 * 117.49949 * 180.08390 * 29 2 1 32 32 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 33 33 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 34 34 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.46738 * 184.99930 * 4 2 1 36 36 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 37 37 H 0.97003 * 119.99614 * 359.97438 * 7 5 4 38 38 H 1.09004 * 110.40803 * 206.01077 * 12 10 8 39 39 H 1.08999 * 110.41671 * 328.45377 * 12 10 8 40 40 H 1.08995 * 109.47394 * 65.50963 * 14 13 12 41 41 H 1.09010 * 109.47058 * 185.50874 * 14 13 12 42 42 H 0.97005 * 119.99318 * 0.02562 * 17 15 14 43 43 H 0.96994 * 119.99731 * 179.97438 * 21 20 18 44 44 H 1.09000 * 110.41449 * 280.92963 * 26 13 12 45 45 H 1.08998 * 110.41231 * 158.48163 * 26 13 12 46 46 H 1.09007 * 115.55242 * 34.41619 * 29 2 1 47 47 H 1.09002 * 117.49978 * 359.97438 * 30 29 2 48 48 H 1.08999 * 117.49879 * 145.02328 * 30 29 2 49 49 H 1.08994 * 117.49920 * 214.98035 * 31 29 2 50 50 H 1.09002 * 117.49617 * 359.97438 * 31 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 8 1.0110 1.0870 -2.3633 7 7 1.9852 -0.3914 -3.7002 8 6 1.5972 0.3650 -4.8933 9 1 0.9010 1.1862 -4.7229 10 6 1.4674 -0.4083 -6.2071 11 1 1.5972 -1.4905 -6.2086 12 6 0.6149 0.2114 -7.3351 13 7 1.6160 1.0794 -8.0801 14 6 0.9259 2.1144 -8.8614 15 6 -0.0891 1.4666 -9.7676 16 8 -0.2246 0.2613 -9.7627 17 7 -0.8463 2.2265 -10.5835 18 6 -1.7693 1.6371 -11.4082 19 1 -1.8899 0.5639 -11.4038 20 6 -2.5503 2.4207 -12.2490 21 7 -2.4038 3.7266 -12.2539 22 14 -3.8084 1.6176 -13.3722 23 1 -5.1105 1.5173 -12.6654 24 1 -3.9728 2.4390 -14.5984 25 1 -3.3420 0.2582 -13.7459 26 6 2.4483 1.6867 -7.0099 27 6 2.6532 0.5508 -5.9847 28 1 3.6659 0.1826 -5.8205 29 6 2.0401 -0.7212 1.2492 30 6 2.7394 0.1231 2.3164 31 6 3.5551 -0.8264 1.4353 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 3.1263 -0.7995 -1.2056 36 1 1.6053 -1.7198 -1.2952 37 1 2.4897 -1.2150 -3.7907 38 1 0.2250 -0.5686 -7.9891 39 1 -0.2011 0.7999 -6.9155 40 1 0.4212 2.8042 -8.1850 41 1 1.6527 2.6613 -9.4622 42 1 -0.7376 3.1905 -10.5876 43 1 -2.9488 4.2735 -12.8411 44 1 1.9240 2.5242 -6.5496 45 1 3.4072 2.0126 -7.4129 46 1 1.4319 -1.5595 1.5894 47 1 2.8365 1.1924 2.1283 48 1 2.5916 -0.1599 3.3586 49 1 3.9436 -1.7334 1.8981 50 1 4.1885 -0.3820 0.6674 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115311473.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:13 Heat of formation + Delta-G solvation = -35.208625 kcal Electronic energy + Delta-G solvation = -28100.139708 eV Core-core repulsion = 24127.992308 eV Total energy + Delta-G solvation = -3972.147400 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.48134 -40.64065 -39.69175 -38.60556 -36.34750 -35.72423 -34.11504 -33.63433 -33.22063 -29.53104 -29.34163 -28.48957 -26.52260 -24.68461 -23.57990 -23.13561 -22.03615 -21.59975 -21.30757 -20.92297 -20.50556 -19.84804 -18.08173 -17.93838 -17.61257 -16.71813 -16.59884 -16.31907 -16.28461 -16.08643 -15.77508 -15.55916 -15.05052 -14.92683 -14.64300 -14.39415 -14.16003 -13.89165 -13.83300 -13.53543 -13.28953 -13.15355 -13.02237 -12.91249 -12.48390 -12.43506 -12.41452 -12.39350 -12.24722 -12.14345 -12.11536 -11.88667 -11.74143 -11.49049 -11.11932 -11.09035 -10.87566 -10.69088 -10.23522 -10.02764 -9.76417 -9.44081 -8.47769 -5.96606 1.37031 1.40940 1.53838 1.55387 1.93372 2.02025 2.27751 2.65915 2.83908 2.94257 3.18881 3.29248 3.54158 3.64889 3.72336 3.81814 3.85025 3.99588 4.08892 4.10650 4.21312 4.26445 4.26903 4.34744 4.42091 4.48694 4.53138 4.54295 4.64066 4.64471 4.73341 4.79803 4.85446 4.90562 4.96665 5.05125 5.11456 5.18765 5.21272 5.23795 5.31725 5.39933 5.40098 5.45093 5.55413 5.67985 5.84915 6.05545 6.52676 6.58633 7.11142 7.25402 7.53519 8.08952 8.69693 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024532 B = 0.001730 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.080673 B =16180.852021 C =16648.833472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.042 4.042 3 H 0.058 0.942 4 C -0.125 4.125 5 C 0.511 3.489 6 O -0.578 6.578 7 N -0.688 5.688 8 C 0.109 3.891 9 H 0.106 0.894 10 C -0.166 4.166 11 H 0.133 0.867 12 C 0.064 3.936 13 N -0.499 5.499 14 C 0.042 3.958 15 C 0.440 3.560 16 O -0.613 6.613 17 N -0.572 5.572 18 C -0.334 4.334 19 H 0.081 0.919 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.994 3.006 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.272 1.272 26 C 0.056 3.944 27 C -0.151 4.151 28 H 0.145 0.855 29 C -0.150 4.150 30 C -0.189 4.189 31 C -0.173 4.173 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.420 0.580 38 H 0.085 0.915 39 H 0.029 0.971 40 H 0.064 0.936 41 H 0.113 0.887 42 H 0.396 0.604 43 H 0.278 0.722 44 H 0.046 0.954 45 H 0.107 0.893 46 H 0.113 0.887 47 H 0.086 0.914 48 H 0.100 0.900 49 H 0.106 0.894 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.161 -8.077 26.258 30.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.061 4.061 3 H 0.076 0.924 4 C -0.164 4.164 5 C 0.301 3.699 6 O -0.458 6.458 7 N -0.338 5.338 8 C 0.002 3.998 9 H 0.124 0.876 10 C -0.186 4.186 11 H 0.151 0.849 12 C -0.063 4.063 13 N -0.224 5.224 14 C -0.090 4.090 15 C 0.227 3.773 16 O -0.499 6.499 17 N -0.209 5.209 18 C -0.463 4.463 19 H 0.099 0.901 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.818 3.182 23 H -0.197 1.197 24 H -0.195 1.195 25 H -0.197 1.197 26 C -0.071 4.071 27 C -0.171 4.171 28 H 0.163 0.837 29 C -0.168 4.168 30 C -0.226 4.226 31 C -0.210 4.210 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.257 0.743 38 H 0.103 0.897 39 H 0.047 0.953 40 H 0.082 0.918 41 H 0.131 0.869 42 H 0.229 0.771 43 H 0.087 0.913 44 H 0.064 0.936 45 H 0.126 0.874 46 H 0.131 0.869 47 H 0.105 0.895 48 H 0.118 0.882 49 H 0.124 0.876 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 13.857 -8.296 25.843 30.475 hybrid contribution -1.196 0.697 -0.478 1.465 sum 12.662 -7.599 25.365 29.350 Atomic orbital electron populations 1.21887 0.95238 1.01863 1.01708 1.20385 0.95725 0.98172 0.91815 0.92399 1.21770 1.04602 1.00402 0.89643 1.21446 0.77867 0.85315 0.85312 1.90687 1.41325 1.26718 1.87021 1.45250 1.57238 1.27468 1.03873 1.21515 0.99878 0.97326 0.81122 0.87609 1.23825 1.00715 0.99232 0.94843 0.84912 1.23213 0.92628 0.97301 0.93109 1.66448 1.18260 1.17404 1.20317 1.21992 0.96198 0.94009 0.96774 1.20652 0.84728 0.87561 0.84354 1.90440 1.72154 1.15867 1.71444 1.41921 1.33765 1.09481 1.35767 1.19682 1.14960 0.93708 1.17957 0.90135 1.26058 1.00147 0.95858 0.99228 1.69676 1.41674 1.04723 1.40059 0.84910 0.77799 0.78014 0.77504 1.19730 1.19518 1.19669 1.22777 0.99182 0.94886 0.90282 1.23961 0.96351 0.98345 0.98422 0.83695 1.22320 0.95492 1.02074 0.96887 1.23084 1.05146 0.97551 0.96800 1.23053 0.93112 1.01936 1.02909 0.92842 0.93406 0.91963 0.86258 0.86418 0.74261 0.89716 0.95258 0.91767 0.86898 0.77072 0.91301 0.93562 0.87442 0.86918 0.89539 0.88157 0.87587 0.88466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.92 71.98 0.64 -1.92 16 2 C -0.04 -0.59 2.19 -10.79 -0.02 -0.61 16 3 H 0.06 1.06 7.71 -2.39 -0.02 1.04 16 4 C -0.12 -1.35 5.09 29.85 0.15 -1.19 16 5 C 0.51 9.68 7.55 87.66 0.66 10.34 16 6 O -0.58 -16.52 13.53 -3.03 -0.04 -16.56 16 7 N -0.69 -11.01 5.56 -442.53 -2.46 -13.47 16 8 C 0.11 2.42 5.97 44.99 0.27 2.69 16 9 H 0.11 3.00 7.40 -2.39 -0.02 2.99 16 10 C -0.17 -4.06 6.95 -9.95 -0.07 -4.13 16 11 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 12 C 0.06 2.23 5.26 85.75 0.45 2.68 16 13 N -0.50 -16.68 5.38 -876.07 -4.72 -21.39 16 14 C 0.04 1.52 5.61 85.56 0.48 2.00 16 15 C 0.44 21.31 7.49 87.66 0.66 21.97 16 16 O -0.61 -33.66 13.24 -3.08 -0.04 -33.70 16 17 N -0.57 -29.91 5.29 -306.98 -1.62 -31.54 16 18 C -0.33 -19.15 9.68 84.04 0.81 -18.33 16 19 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 20 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 21 N -0.92 -50.29 13.05 21.66 0.28 -50.01 16 22 Si 0.99 43.36 29.55 68.60 2.03 45.39 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 C 0.06 1.38 6.31 86.45 0.55 1.93 16 27 C -0.15 -3.11 7.05 -9.95 -0.07 -3.18 16 28 H 0.15 2.23 8.14 -2.39 -0.02 2.21 16 29 C -0.15 -1.52 5.15 -10.79 -0.06 -1.57 16 30 C -0.19 -1.94 10.18 30.62 0.31 -1.63 16 31 C -0.17 -1.38 9.68 30.62 0.30 -1.09 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.05 1.11 5.95 -2.39 -0.01 1.10 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.12 0.73 7.13 -2.39 -0.02 0.71 16 36 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.42 3.74 8.83 -92.71 -0.82 2.92 16 38 H 0.08 3.55 6.14 -2.38 -0.01 3.54 16 39 H 0.03 1.07 8.08 -2.39 -0.02 1.05 16 40 H 0.06 2.15 7.88 -2.39 -0.02 2.13 16 41 H 0.11 3.61 8.14 -2.38 -0.02 3.59 16 42 H 0.40 19.74 7.90 -92.70 -0.73 19.01 16 43 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 44 H 0.05 1.14 7.82 -2.39 -0.02 1.13 16 45 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.11 0.99 8.11 -2.38 -0.02 0.97 16 47 H 0.09 1.02 8.05 -2.39 -0.02 1.00 16 48 H 0.10 0.86 8.14 -2.39 -0.02 0.85 16 49 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.10 0.72 7.59 -2.39 -0.02 0.71 16 Total: -1.00 -73.06 402.83 -1.64 -74.70 By element: Atomic # 1 Polarization: 39.47 SS G_CDS: -0.59 Total: 38.88 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: 5.53 Total: 7.70 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -8.52 Total: -116.41 kcal Atomic # 8 Polarization: -50.18 SS G_CDS: -0.08 Total: -50.27 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -73.06 -1.64 -74.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115311473.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.491 kcal (2) G-P(sol) polarization free energy of solvation -73.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds