Wall clock time and date at job start Tue Mar 31 2020 19:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47084 * 2 1 4 4 C 1.50698 * 109.47059 * 239.99969 * 2 1 3 5 5 H 1.07999 * 120.00593 * 239.99949 * 4 2 1 6 6 C 1.37881 * 120.00243 * 60.00118 * 4 2 1 7 7 N 1.31516 * 119.99575 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00190 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47361 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47074 * 120.00047 * 8 6 4 11 11 H 1.48498 * 109.46960 * 239.99926 * 8 6 4 12 12 N 1.46505 * 109.47082 * 120.00094 * 2 1 3 13 13 C 1.34771 * 119.99881 * 274.99679 * 12 2 1 14 14 O 1.21593 * 120.00323 * 0.02562 * 13 12 2 15 15 N 1.34779 * 119.99714 * 179.97438 * 13 12 2 16 16 C 1.40150 * 119.99812 * 184.63685 * 15 13 12 17 17 C 1.38835 * 120.01821 * 324.66566 * 16 15 13 18 18 C 1.38090 * 119.99089 * 179.74031 * 17 16 15 19 19 C 1.38721 * 120.01344 * 0.51191 * 18 17 16 20 20 O 1.35969 * 119.98756 * 179.74701 * 19 18 17 21 21 C 1.42901 * 117.00403 * 0.02562 * 20 19 18 22 22 C 1.52994 * 109.47505 * 180.02562 * 21 20 19 23 23 C 1.52996 * 109.47430 * 180.02562 * 22 21 20 24 24 N 1.46894 * 109.47515 * 180.02562 * 23 22 21 25 25 C 1.46901 * 111.00528 * 170.00071 * 24 23 22 26 26 C 1.46906 * 110.99805 * 293.95342 * 24 23 22 27 27 C 1.38717 * 120.02357 * 359.75991 * 19 18 17 28 28 C 1.38091 * 120.01560 * 359.97438 * 27 19 18 29 29 H 1.09000 * 109.46929 * 60.00033 * 1 2 3 30 30 H 1.08999 * 109.47084 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46793 * 299.99786 * 1 2 3 32 32 H 0.97000 * 119.99669 * 179.97438 * 7 6 4 33 33 H 0.96999 * 119.99999 * 95.00275 * 12 2 1 34 34 H 0.96995 * 120.00417 * 4.63722 * 15 13 12 35 35 H 1.08008 * 120.00334 * 359.96601 * 17 16 15 36 36 H 1.08003 * 120.00082 * 180.24905 * 18 17 16 37 37 H 1.08998 * 109.47095 * 300.00484 * 21 20 19 38 38 H 1.09007 * 109.46447 * 60.00266 * 21 20 19 39 39 H 1.09004 * 109.47138 * 300.00709 * 22 21 20 40 40 H 1.09004 * 109.46718 * 60.00476 * 22 21 20 41 41 H 1.09004 * 109.47243 * 300.00282 * 23 22 21 42 42 H 1.08996 * 109.47227 * 60.00055 * 23 22 21 43 43 H 1.08995 * 109.46884 * 59.99199 * 25 24 23 44 44 H 1.08992 * 109.47529 * 179.97438 * 25 24 23 45 45 H 1.09005 * 109.46865 * 299.99902 * 25 24 23 46 46 H 1.08999 * 109.47302 * 60.00178 * 26 24 23 47 47 H 1.09007 * 109.46751 * 179.97438 * 26 24 23 48 48 H 1.08995 * 109.47257 * 299.99556 * 26 24 23 49 49 H 1.08002 * 119.98788 * 179.97438 * 27 19 18 50 50 H 1.08000 * 120.00649 * 179.97438 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9427 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 3.1473 -2.2863 -3.6039 10 1 1.1678 -1.5866 -4.8165 11 1 3.1472 -0.1857 -4.8160 12 7 2.0183 -0.6907 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8575 1.1614 2.4119 15 7 2.5958 -0.6538 3.4577 16 6 2.6379 0.0183 4.6868 17 6 2.9451 1.3716 4.7282 18 6 2.9811 2.0345 5.9390 19 6 2.7209 1.3462 7.1149 20 8 2.7615 1.9983 8.3074 21 6 3.0781 3.3914 8.2746 22 6 3.0773 3.9483 9.6995 23 6 3.4156 5.4400 9.6643 24 7 3.4155 5.9746 11.0325 25 6 3.9637 7.3371 11.0655 26 6 2.0664 5.9359 11.6127 27 6 2.4194 -0.0073 7.0748 28 6 2.3777 -0.6701 5.8640 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.7087 1.1613 -3.4844 33 1 2.2490 -1.6318 1.1526 34 1 2.8897 -1.5764 3.3991 35 1 3.1522 1.9067 3.8131 36 1 3.2161 3.0882 5.9710 37 1 4.0643 3.5295 7.8314 38 1 2.3342 3.9190 7.6774 39 1 2.0913 3.8101 10.1431 40 1 3.8214 3.4207 10.2962 41 1 4.4015 5.5786 9.2206 42 1 2.6713 5.9674 9.0677 43 1 3.3573 7.9881 10.4358 44 1 3.9515 7.7090 12.0900 45 1 4.9888 7.3253 10.6951 46 1 1.7121 4.9054 11.6401 47 1 2.0950 6.3369 12.6259 48 1 1.3912 6.5362 11.0029 49 1 2.2174 -0.5427 7.9907 50 1 2.1435 -1.7239 5.8330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116651682.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:54 Heat of formation + Delta-G solvation = -37.533301 kcal Electronic energy + Delta-G solvation = -27657.679229 eV Core-core repulsion = 23685.431024 eV Total energy + Delta-G solvation = -3972.248206 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.41312 -39.47130 -38.18441 -37.30210 -34.96536 -33.98571 -32.83329 -32.31069 -30.91016 -29.34821 -28.05647 -27.90385 -26.62394 -25.26179 -23.69499 -22.94048 -21.93137 -21.14605 -20.96170 -19.81326 -18.22436 -18.13910 -17.32373 -16.63451 -16.19845 -15.96341 -15.55747 -15.36150 -15.13948 -15.02133 -14.53103 -14.32935 -14.09932 -13.95338 -13.56819 -13.44558 -13.06335 -12.86718 -12.69616 -12.60000 -12.38487 -12.21865 -12.20564 -11.90935 -11.80250 -11.67428 -11.43165 -11.10603 -11.02111 -10.95998 -10.75147 -10.71749 -10.31541 -10.25100 -9.66716 -9.35591 -9.05029 -8.87988 -8.85242 -8.58285 -8.01685 -7.45921 -6.14339 -4.23425 1.40536 1.54504 2.94247 3.21610 3.23152 3.30989 3.34370 3.61840 3.67523 4.04886 4.31068 4.46537 4.63385 4.67522 4.77406 4.88931 4.93244 4.95378 4.96525 5.03703 5.07238 5.13155 5.18533 5.20674 5.24473 5.37143 5.42521 5.45859 5.48605 5.67667 5.68942 5.80445 6.02654 6.10094 6.48800 6.50486 6.52130 6.53448 6.62152 6.80291 6.97582 7.07660 7.12516 7.25180 7.44898 7.46622 7.61238 7.82696 7.99591 8.14044 8.72243 8.84657 9.24200 9.45390 10.91770 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021657 B = 0.001670 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.570909 B =16761.822958 C =17555.667974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.049 0.951 4 C -0.533 4.533 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.719 5.719 13 C 0.693 3.307 14 O -0.585 6.585 15 N -0.696 5.696 16 C 0.144 3.856 17 C -0.080 4.080 18 C -0.188 4.188 19 C 0.102 3.898 20 O -0.318 6.318 21 C 0.061 3.939 22 C -0.115 4.115 23 C 0.056 3.944 24 N -0.547 5.547 25 C 0.024 3.976 26 C 0.018 3.982 27 C -0.134 4.134 28 C -0.116 4.116 29 H 0.090 0.910 30 H 0.026 0.974 31 H 0.015 0.985 32 H 0.264 0.736 33 H 0.386 0.614 34 H 0.402 0.598 35 H 0.146 0.854 36 H 0.126 0.874 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.039 0.961 43 H 0.026 0.974 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.027 0.973 49 H 0.130 0.870 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.897 4.729 25.532 26.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.178 3.822 3 H 0.067 0.933 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.370 5.370 13 C 0.393 3.607 14 O -0.463 6.463 15 N -0.345 5.345 16 C 0.048 3.952 17 C -0.101 4.101 18 C -0.207 4.207 19 C 0.056 3.944 20 O -0.232 6.232 21 C -0.015 4.015 22 C -0.153 4.153 23 C -0.072 4.072 24 N -0.271 5.271 25 C -0.125 4.125 26 C -0.130 4.130 27 C -0.153 4.153 28 C -0.137 4.137 29 H 0.109 0.891 30 H 0.045 0.955 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.218 0.782 34 H 0.236 0.764 35 H 0.164 0.836 36 H 0.144 0.856 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.057 0.943 43 H 0.045 0.955 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.092 0.908 47 H 0.087 0.913 48 H 0.045 0.955 49 H 0.148 0.852 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.772 5.571 25.768 26.792 hybrid contribution -0.036 -0.641 -1.637 1.759 sum 4.736 4.930 24.131 25.080 Atomic orbital electron populations 1.22101 0.98528 0.99106 1.00931 1.18688 0.90880 0.93756 0.78898 0.93279 1.21246 1.32429 1.13257 0.90235 0.92012 1.24886 0.94815 0.94974 0.99054 1.69917 1.35849 1.22455 1.23806 0.86376 0.78589 0.79494 0.82518 1.19752 1.20875 1.20874 1.45857 1.68604 1.13302 1.09261 1.16164 0.78573 0.85498 0.80433 1.90859 1.57220 1.14193 1.84015 1.42794 1.68809 1.16252 1.06612 1.17472 1.00744 0.92518 0.84471 1.21243 0.96792 0.93716 0.98349 1.21138 1.07362 1.00339 0.91861 1.18888 0.99185 0.92114 0.84167 1.85999 1.85971 1.23026 1.28196 1.22670 1.00516 0.80107 0.98182 1.21490 1.03738 0.94735 0.95335 1.22014 1.01678 0.94372 0.89115 1.61936 1.23003 1.22089 1.20096 1.22394 1.00024 0.88173 1.01869 1.22482 0.88572 1.02340 0.99591 1.20078 1.05598 0.91559 0.98048 1.20670 1.02099 1.00230 0.90685 0.89110 0.95514 0.96580 0.92602 0.78166 0.76369 0.83616 0.85580 0.91964 0.92122 0.90774 0.89910 0.90289 0.94316 0.95525 0.91215 0.91183 0.90835 0.91320 0.95472 0.85220 0.85251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.16 0.34 -3.36 16 2 C 0.28 7.09 2.56 -69.08 -0.18 6.92 16 3 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 4 C -0.53 -13.99 8.73 -34.44 -0.30 -14.29 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.73 11.32 55.43 0.63 -24.10 16 8 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 9 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 12 N -0.72 -14.87 5.07 -59.81 -0.30 -15.18 16 13 C 0.69 14.05 8.37 -86.92 -0.73 13.33 16 14 O -0.58 -14.08 13.46 5.28 0.07 -14.01 16 15 N -0.70 -10.76 5.35 -14.19 -0.08 -10.84 16 16 C 0.14 2.19 6.30 -83.61 -0.53 1.66 16 17 C -0.08 -1.30 8.69 -39.41 -0.34 -1.64 16 18 C -0.19 -2.58 9.03 -39.46 -0.36 -2.94 16 19 C 0.10 1.33 6.69 -39.23 -0.26 1.07 16 20 O -0.32 -3.78 10.14 -19.64 -0.20 -3.98 16 21 C 0.06 0.55 4.74 37.15 0.18 0.73 16 22 C -0.12 -0.88 5.51 -26.74 -0.15 -1.02 16 23 C 0.06 0.39 4.96 -3.83 -0.02 0.37 16 24 N -0.55 -3.92 5.02 -251.26 -1.26 -5.18 16 25 C 0.02 0.13 9.57 60.07 0.57 0.71 16 26 C 0.02 0.11 9.32 60.07 0.56 0.67 16 27 C -0.13 -1.63 9.98 -39.46 -0.39 -2.03 16 28 C -0.12 -1.45 9.96 -39.41 -0.39 -1.84 16 29 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.39 6.78 8.56 -40.82 -0.35 6.43 16 34 H 0.40 4.74 8.84 -40.82 -0.36 4.38 16 35 H 0.15 2.69 6.24 -52.48 -0.33 2.36 16 36 H 0.13 1.48 6.29 -52.48 -0.33 1.15 16 37 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 38 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 39 H 0.07 0.58 6.55 -51.93 -0.34 0.23 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.50 8.06 -51.93 -0.42 0.08 16 42 H 0.04 0.27 8.12 -51.93 -0.42 -0.16 16 43 H 0.03 0.15 8.14 -51.93 -0.42 -0.28 16 44 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 45 H 0.07 0.37 8.12 -51.93 -0.42 -0.06 16 46 H 0.07 0.45 6.47 -51.93 -0.34 0.11 16 47 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 48 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 49 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 50 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 405.51 15.07 6.11 6.11 Total: -1.00 -31.84 405.51 -10.29 -42.13 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -8.15 Total: 9.60 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -2.08 Total: 0.00 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -1.01 Total: -55.30 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.13 Total: -17.99 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.84 -10.29 -42.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116651682.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.593 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds