Wall clock time and date at job start Tue Mar 31 2020 19:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47084 * 2 1 4 4 C 1.50698 * 109.47059 * 239.99969 * 2 1 3 5 5 H 1.07999 * 120.00593 * 239.99949 * 4 2 1 6 6 C 1.37881 * 120.00243 * 60.00118 * 4 2 1 7 7 N 1.31516 * 119.99575 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00190 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47361 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47074 * 120.00047 * 8 6 4 11 11 H 1.48498 * 109.46960 * 239.99926 * 8 6 4 12 12 N 1.46505 * 109.47082 * 120.00094 * 2 1 3 13 13 C 1.34771 * 119.99881 * 274.99679 * 12 2 1 14 14 O 1.21593 * 120.00323 * 0.02562 * 13 12 2 15 15 N 1.34779 * 119.99714 * 179.97438 * 13 12 2 16 16 C 1.40150 * 119.99812 * 184.63685 * 15 13 12 17 17 C 1.38835 * 120.01821 * 324.66566 * 16 15 13 18 18 C 1.38090 * 119.99089 * 179.74031 * 17 16 15 19 19 C 1.38721 * 120.01344 * 0.51191 * 18 17 16 20 20 O 1.35969 * 119.98756 * 179.74701 * 19 18 17 21 21 C 1.42901 * 117.00403 * 0.02562 * 20 19 18 22 22 C 1.52994 * 109.47505 * 180.02562 * 21 20 19 23 23 C 1.52996 * 109.47430 * 180.02562 * 22 21 20 24 24 N 1.46894 * 109.47515 * 180.02562 * 23 22 21 25 25 C 1.46901 * 111.00528 * 170.00071 * 24 23 22 26 26 C 1.46906 * 110.99805 * 293.95342 * 24 23 22 27 27 C 1.38717 * 120.02357 * 359.75991 * 19 18 17 28 28 C 1.38091 * 120.01560 * 359.97438 * 27 19 18 29 29 H 1.09000 * 109.46929 * 60.00033 * 1 2 3 30 30 H 1.08999 * 109.47084 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46793 * 299.99786 * 1 2 3 32 32 H 0.97000 * 119.99669 * 179.97438 * 7 6 4 33 33 H 0.96999 * 119.99999 * 95.00275 * 12 2 1 34 34 H 0.96995 * 120.00417 * 4.63722 * 15 13 12 35 35 H 1.08008 * 120.00334 * 359.96601 * 17 16 15 36 36 H 1.08003 * 120.00082 * 180.24905 * 18 17 16 37 37 H 1.08998 * 109.47095 * 300.00484 * 21 20 19 38 38 H 1.09007 * 109.46447 * 60.00266 * 21 20 19 39 39 H 1.09004 * 109.47138 * 300.00709 * 22 21 20 40 40 H 1.09004 * 109.46718 * 60.00476 * 22 21 20 41 41 H 1.09004 * 109.47243 * 300.00282 * 23 22 21 42 42 H 1.08996 * 109.47227 * 60.00055 * 23 22 21 43 43 H 1.08995 * 109.46884 * 59.99199 * 25 24 23 44 44 H 1.08992 * 109.47529 * 179.97438 * 25 24 23 45 45 H 1.09005 * 109.46865 * 299.99902 * 25 24 23 46 46 H 1.08999 * 109.47302 * 60.00178 * 26 24 23 47 47 H 1.09007 * 109.46751 * 179.97438 * 26 24 23 48 48 H 1.08995 * 109.47257 * 299.99556 * 26 24 23 49 49 H 1.08002 * 119.98788 * 179.97438 * 27 19 18 50 50 H 1.08000 * 120.00649 * 179.97438 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9427 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 3.1473 -2.2863 -3.6039 10 1 1.1678 -1.5866 -4.8165 11 1 3.1472 -0.1857 -4.8160 12 7 2.0183 -0.6907 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8575 1.1614 2.4119 15 7 2.5958 -0.6538 3.4577 16 6 2.6379 0.0183 4.6868 17 6 2.9451 1.3716 4.7282 18 6 2.9811 2.0345 5.9390 19 6 2.7209 1.3462 7.1149 20 8 2.7615 1.9983 8.3074 21 6 3.0781 3.3914 8.2746 22 6 3.0773 3.9483 9.6995 23 6 3.4156 5.4400 9.6643 24 7 3.4155 5.9746 11.0325 25 6 3.9637 7.3371 11.0655 26 6 2.0664 5.9359 11.6127 27 6 2.4194 -0.0073 7.0748 28 6 2.3777 -0.6701 5.8640 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.7087 1.1613 -3.4844 33 1 2.2490 -1.6318 1.1526 34 1 2.8897 -1.5764 3.3991 35 1 3.1522 1.9067 3.8131 36 1 3.2161 3.0882 5.9710 37 1 4.0643 3.5295 7.8314 38 1 2.3342 3.9190 7.6774 39 1 2.0913 3.8101 10.1431 40 1 3.8214 3.4207 10.2962 41 1 4.4015 5.5786 9.2206 42 1 2.6713 5.9674 9.0677 43 1 3.3573 7.9881 10.4358 44 1 3.9515 7.7090 12.0900 45 1 4.9888 7.3253 10.6951 46 1 1.7121 4.9054 11.6401 47 1 2.0950 6.3369 12.6259 48 1 1.3912 6.5362 11.0029 49 1 2.2174 -0.5427 7.9907 50 1 2.1435 -1.7239 5.8330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116651682.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:53 Heat of formation + Delta-G solvation = -59.140341 kcal Electronic energy + Delta-G solvation = -27658.616181 eV Core-core repulsion = 23685.431024 eV Total energy + Delta-G solvation = -3973.185157 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.65760 -40.70733 -38.93105 -38.30462 -36.75039 -35.38760 -34.30029 -33.46759 -31.96337 -31.04229 -29.19035 -28.50897 -27.40047 -27.29880 -24.54933 -24.19926 -23.01788 -22.34261 -21.79007 -21.50485 -19.79773 -19.14779 -18.63627 -17.82993 -17.35220 -17.08092 -16.85717 -16.32410 -16.16733 -15.95295 -15.84273 -15.70150 -15.27023 -15.08556 -14.67116 -14.49561 -14.38511 -14.24160 -13.89994 -13.56767 -13.50205 -13.30227 -12.98057 -12.93961 -12.86692 -12.77433 -12.71174 -12.53404 -12.34288 -12.28100 -12.18617 -12.10890 -11.88832 -11.54940 -11.15604 -11.08608 -10.76461 -10.60880 -9.95870 -9.79888 -9.36949 -8.63062 -8.17345 -6.34551 0.35451 0.42382 1.45436 1.46153 1.58176 1.80102 2.15103 2.19109 2.42744 2.85707 3.05958 3.13482 3.47105 3.85220 3.87467 3.93212 4.07569 4.10655 4.23810 4.31324 4.36886 4.40896 4.47525 4.49956 4.56136 4.62772 4.71176 4.72649 4.74853 4.91709 4.93669 4.98837 5.00817 5.08275 5.09102 5.10507 5.20314 5.33210 5.39407 5.44560 5.52094 5.61030 5.67706 5.84803 5.92277 6.01644 6.04348 6.09732 6.29251 6.46705 6.73643 7.26140 7.34618 7.70037 8.89392 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021657 B = 0.001670 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.570909 B =16761.822958 C =17555.667974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.287 3.713 3 H -0.001 1.001 4 C -0.545 4.545 5 H 0.075 0.925 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.259 1.259 10 H -0.279 1.279 11 H -0.285 1.285 12 N -0.714 5.714 13 C 0.692 3.308 14 O -0.628 6.628 15 N -0.674 5.674 16 C 0.116 3.884 17 C -0.105 4.105 18 C -0.193 4.193 19 C 0.103 3.897 20 O -0.322 6.322 21 C 0.056 3.944 22 C -0.105 4.105 23 C 0.058 3.942 24 N -0.561 5.561 25 C 0.023 3.977 26 C 0.017 3.983 27 C -0.132 4.132 28 C -0.099 4.099 29 H 0.067 0.933 30 H 0.041 0.959 31 H 0.009 0.991 32 H 0.265 0.735 33 H 0.404 0.596 34 H 0.421 0.579 35 H 0.112 0.888 36 H 0.138 0.862 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.038 0.962 43 H 0.026 0.974 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.026 0.974 49 H 0.158 0.842 50 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.489 2.782 27.074 27.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.184 3.816 3 H 0.017 0.983 4 C -0.583 4.583 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.799 3.201 9 H -0.183 1.183 10 H -0.205 1.205 11 H -0.211 1.211 12 N -0.367 5.367 13 C 0.392 3.608 14 O -0.509 6.509 15 N -0.324 5.324 16 C 0.021 3.979 17 C -0.126 4.126 18 C -0.212 4.212 19 C 0.058 3.942 20 O -0.236 6.236 21 C -0.019 4.019 22 C -0.142 4.142 23 C -0.070 4.070 24 N -0.285 5.285 25 C -0.125 4.125 26 C -0.131 4.131 27 C -0.151 4.151 28 C -0.119 4.119 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.028 0.972 32 H 0.075 0.925 33 H 0.239 0.761 34 H 0.260 0.740 35 H 0.130 0.870 36 H 0.155 0.845 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.056 0.944 43 H 0.045 0.955 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.095 0.905 48 H 0.044 0.956 49 H 0.176 0.824 50 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.394 3.570 27.371 28.125 hybrid contribution -0.201 0.051 -1.945 1.957 sum 5.193 3.621 25.426 26.202 Atomic orbital electron populations 1.21916 0.98421 0.99458 0.99458 1.18266 0.90904 0.91718 0.80752 0.98270 1.21559 1.32540 1.13589 0.90589 0.90689 1.25804 0.94883 0.95597 1.02323 1.70066 1.37004 1.23966 1.24567 0.85262 0.78048 0.78484 0.78304 1.18289 1.20470 1.21072 1.45429 1.68894 1.13955 1.08381 1.16275 0.78361 0.84978 0.81180 1.90841 1.58948 1.16311 1.84828 1.42409 1.67701 1.16879 1.05453 1.17709 1.02661 0.92526 0.84985 1.21096 0.98875 0.94602 0.97981 1.21209 1.07489 1.01046 0.91477 1.19067 0.98298 0.92717 0.84157 1.86004 1.85763 1.24348 1.27507 1.22859 1.00966 0.78827 0.99271 1.21398 1.03556 0.95093 0.94192 1.21986 1.01943 0.93760 0.89291 1.61956 1.23534 1.22938 1.20056 1.22434 1.00135 0.87509 1.02444 1.22507 0.88192 1.02342 1.00011 1.20477 1.04251 0.91298 0.99027 1.20957 1.00036 1.01599 0.89325 0.91410 0.94029 0.97156 0.92546 0.76090 0.74029 0.86981 0.84453 0.91175 0.92013 0.90881 0.90261 0.89788 0.94386 0.95509 0.90427 0.90815 0.90941 0.90481 0.95563 0.82420 0.81873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.84 9.26 71.98 0.67 -6.18 16 2 C 0.29 14.97 2.56 44.24 0.11 15.08 16 3 H 0.00 -0.04 7.58 -2.39 -0.02 -0.06 16 4 C -0.54 -28.58 8.73 25.60 0.22 -28.35 16 5 H 0.08 3.65 7.74 -2.91 -0.02 3.63 16 6 C 0.01 0.74 5.30 84.66 0.45 1.19 16 7 N -0.92 -52.53 11.32 21.45 0.24 -52.28 16 8 Si 0.97 41.68 29.54 68.60 2.03 43.70 16 9 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 10 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 12 N -0.71 -29.65 5.07 -461.41 -2.34 -31.99 16 13 C 0.69 28.53 8.37 179.06 1.50 30.03 16 14 O -0.63 -31.74 13.46 -4.01 -0.05 -31.80 16 15 N -0.67 -20.34 5.35 -317.06 -1.70 -22.04 16 16 C 0.12 3.45 6.30 38.10 0.24 3.69 16 17 C -0.10 -3.49 8.69 22.38 0.19 -3.29 16 18 C -0.19 -5.30 9.03 22.35 0.20 -5.10 16 19 C 0.10 2.54 6.69 22.50 0.15 2.69 16 20 O -0.32 -7.11 10.14 -93.20 -0.94 -8.05 16 21 C 0.06 0.96 4.74 71.98 0.34 1.30 16 22 C -0.10 -1.47 5.51 30.59 0.17 -1.30 16 23 C 0.06 0.74 4.96 86.30 0.43 1.17 16 24 N -0.56 -7.40 5.02 -948.86 -4.76 -12.16 16 25 C 0.02 0.23 9.57 127.69 1.22 1.46 16 26 C 0.02 0.20 9.32 127.69 1.19 1.39 16 27 C -0.13 -2.83 9.98 22.35 0.22 -2.61 16 28 C -0.10 -2.19 9.96 22.38 0.22 -1.97 16 29 H 0.07 3.79 6.07 -2.39 -0.01 3.77 16 30 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 33 H 0.40 13.71 8.56 -92.71 -0.79 12.92 16 34 H 0.42 9.09 8.84 -92.71 -0.82 8.27 16 35 H 0.11 4.47 6.24 -2.91 -0.02 4.46 16 36 H 0.14 3.27 6.29 -2.91 -0.02 3.26 16 37 H 0.07 1.09 7.66 -2.39 -0.02 1.07 16 38 H 0.06 1.05 7.66 -2.38 -0.02 1.03 16 39 H 0.07 1.05 6.55 -2.39 -0.02 1.03 16 40 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.08 0.97 8.06 -2.39 -0.02 0.96 16 42 H 0.04 0.49 8.12 -2.39 -0.02 0.47 16 43 H 0.03 0.27 8.14 -2.39 -0.02 0.25 16 44 H 0.08 0.66 8.12 -2.39 -0.02 0.64 16 45 H 0.07 0.69 8.12 -2.38 -0.02 0.67 16 46 H 0.07 0.82 6.47 -2.39 -0.02 0.80 16 47 H 0.08 0.72 8.12 -2.38 -0.02 0.70 16 48 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 49 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 50 H 0.16 2.48 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -70.73 405.51 -0.66 -71.38 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: -0.66 Total: 34.04 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 7.53 Total: 9.19 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -8.56 Total: -118.47 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: -1.00 Total: -39.85 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Total: -70.73 -0.66 -71.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116651682.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.243 kcal (2) G-P(sol) polarization free energy of solvation -70.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds