Wall clock time and date at job start Tue Mar 31 2020 18:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45190 * 1 3 3 C 1.34897 * 117.00184 * 2 1 4 4 O 1.21619 * 119.99377 * 359.97438 * 3 2 1 5 5 C 1.46495 * 120.00226 * 179.97438 * 3 2 1 6 6 C 1.37994 * 126.26018 * 180.02562 * 5 3 2 7 7 C 1.39794 * 106.96726 * 179.97438 * 6 5 3 8 8 C 1.50696 * 126.08264 * 179.97438 * 7 6 5 9 9 N 1.46897 * 109.47462 * 90.02828 * 8 7 6 10 10 C 1.46896 * 111.00177 * 65.69723 * 9 8 7 11 11 C 1.53235 * 109.34271 * 187.25771 * 10 9 8 12 12 H 1.08996 * 109.79009 * 65.97553 * 11 10 9 13 13 C 1.53000 * 109.62816 * 186.46473 * 11 10 9 14 14 N 1.47080 * 108.52167 * 306.17174 * 11 10 9 15 15 C 1.36938 * 120.88452 * 231.20652 * 14 11 10 16 16 H 1.07998 * 119.99655 * 52.72338 * 15 14 11 17 17 C 1.38812 * 119.99937 * 232.72464 * 15 14 11 18 18 N 1.31612 * 120.00379 * 18.80696 * 17 15 14 19 19 Si 1.86798 * 119.99739 * 198.80834 * 17 15 14 20 20 H 1.48501 * 109.47318 * 89.99732 * 19 17 15 21 21 H 1.48496 * 109.47239 * 209.99844 * 19 17 15 22 22 H 1.48501 * 109.47346 * 329.99950 * 19 17 15 23 23 C 1.47080 * 118.23727 * 51.18281 * 14 11 10 24 24 H 1.09004 * 109.62733 * 68.52269 * 23 14 11 25 25 C 1.52995 * 109.63060 * 189.10531 * 23 14 11 26 26 C 1.46897 * 111.00355 * 190.00559 * 9 8 7 27 27 C 1.35489 * 107.84429 * 0.24670 * 7 6 5 28 28 N 1.34966 * 108.98389 * 359.60124 * 27 7 6 29 29 C 1.46493 * 125.63805 * 180.11863 * 28 27 7 30 30 H 1.08993 * 109.47770 * 300.00499 * 1 2 3 31 31 H 1.09000 * 109.47159 * 60.00651 * 1 2 3 32 32 H 1.09002 * 109.47435 * 180.02562 * 1 2 3 33 33 H 1.07997 * 126.51975 * 359.97422 * 6 5 3 34 34 H 1.09006 * 109.46916 * 330.02966 * 8 7 6 35 35 H 1.08995 * 109.47604 * 210.03186 * 8 7 6 36 36 H 1.09003 * 109.49145 * 67.29812 * 10 9 8 37 37 H 1.09006 * 109.49125 * 307.22067 * 10 9 8 38 38 H 1.09000 * 109.46936 * 179.03038 * 13 11 10 39 39 H 1.09005 * 109.46774 * 299.02231 * 13 11 10 40 40 H 1.08997 * 109.47550 * 59.02766 * 13 11 10 41 41 H 0.96994 * 120.00414 * 182.68305 * 18 17 15 42 42 H 1.08996 * 109.47276 * 52.02532 * 25 23 14 43 43 H 1.09004 * 109.47131 * 172.02333 * 25 23 14 44 44 H 1.08996 * 109.47078 * 292.02186 * 25 23 14 45 45 H 1.09000 * 109.49478 * 52.78560 * 26 9 8 46 46 H 1.08995 * 109.48935 * 292.70676 * 26 9 8 47 47 H 1.08000 * 125.51490 * 179.75421 * 27 7 6 48 48 H 1.08995 * 109.47260 * 270.32671 * 29 28 27 49 49 H 1.09001 * 109.47004 * 30.32691 * 29 28 27 50 50 H 1.09001 * 109.47339 * 150.32195 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4019 2.2219 -0.0005 5 6 3.5273 1.2786 0.0006 6 6 4.2841 2.4325 0.0011 7 6 5.6259 2.0403 0.0021 8 6 6.8195 2.9603 0.0025 9 7 7.2069 3.2593 1.3875 10 6 7.6873 2.0518 2.0723 11 6 7.9082 2.3636 3.5562 12 1 6.9533 2.5847 4.0329 13 6 8.5593 1.1613 4.2427 14 7 8.7950 3.5324 3.6610 15 6 9.9113 3.4988 4.4534 16 1 10.6299 2.7006 4.3402 17 6 10.1192 4.4907 5.4019 18 7 9.1128 5.2370 5.8052 19 14 11.8272 4.7664 6.1061 20 1 12.5524 5.7583 5.2721 21 1 11.7133 5.2771 7.4958 22 1 12.5741 3.4828 6.1102 23 6 8.4512 4.7379 2.8918 24 1 7.5472 5.1884 3.3016 25 6 9.6061 5.7389 2.9617 26 6 8.2089 4.3325 1.4340 27 6 5.6626 0.6859 -0.0034 28 7 4.3987 0.2125 0.0011 29 6 4.0171 -1.2019 -0.0001 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.9108 3.4459 0.0008 34 1 6.5640 3.8870 -0.5115 35 1 7.6507 2.4773 -0.5111 36 1 8.6273 1.7294 1.6245 37 1 6.9461 1.2586 1.9736 38 1 8.7309 1.3922 5.2940 39 1 7.9000 0.2968 4.1636 40 1 9.5106 0.9382 3.7596 41 1 9.2652 5.9555 6.4388 42 1 10.5341 5.2436 2.6761 43 1 9.4113 6.5667 2.2797 44 1 9.6957 6.1197 3.9790 45 1 7.8461 5.1935 0.8725 46 1 9.1416 3.9784 0.9950 47 1 6.5584 0.0826 -0.0079 48 1 3.9237 -1.5521 -1.0280 49 1 4.7810 -1.7848 0.5143 50 1 3.0626 -1.3211 0.5125 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119450295.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:34 Heat of formation + Delta-G solvation = 4.066174 kcal Electronic energy + Delta-G solvation = -30094.523384 eV Core-core repulsion = 26124.079067 eV Total energy + Delta-G solvation = -3970.444317 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.61845 -40.01936 -38.27656 -36.59912 -35.13262 -33.04195 -32.62412 -31.25811 -30.06199 -28.24143 -27.61472 -27.17225 -25.87924 -25.34076 -24.08978 -23.17020 -21.45698 -20.27717 -19.99442 -19.71193 -18.96591 -17.45866 -17.12950 -16.67257 -16.14921 -15.75320 -15.44694 -15.07130 -14.57946 -14.44465 -14.23704 -14.17026 -13.78960 -13.48669 -13.34454 -13.20882 -12.84937 -12.80149 -12.55289 -12.30280 -12.24310 -11.95371 -11.72651 -11.56040 -11.37943 -11.21189 -11.06140 -10.93018 -10.81917 -10.74859 -10.55072 -10.40884 -10.28548 -10.07336 -9.71998 -9.65238 -9.35334 -8.65976 -8.28023 -8.06017 -7.62012 -6.26975 -5.63207 -3.44641 1.15617 2.42626 2.56068 2.71323 3.10362 3.36251 3.44700 3.45605 4.48746 4.51169 4.63260 4.72251 4.81350 4.90667 4.91619 4.96935 5.20293 5.22209 5.31941 5.33272 5.39166 5.42432 5.63534 5.81805 5.95625 5.99588 6.05340 6.10809 6.22531 6.26564 6.30055 6.35982 6.46232 6.49846 6.56697 6.68758 6.73107 6.82894 6.91649 6.93389 7.04852 7.08587 7.22891 7.31705 7.61139 7.65827 7.68993 7.83042 7.86795 7.97379 8.69411 9.30795 9.84081 10.63672 11.26436 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021203 B = 0.002646 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.224996 B =10579.304409 C =10762.729596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.366 6.366 3 C 0.539 3.461 4 O -0.502 6.502 5 C -0.062 4.062 6 C -0.066 4.066 7 C -0.159 4.159 8 C 0.125 3.875 9 N -0.529 5.529 10 C 0.051 3.949 11 C 0.172 3.828 12 H 0.030 0.970 13 C -0.129 4.129 14 N -0.579 5.579 15 C -0.259 4.259 16 H 0.050 0.950 17 C 0.034 3.966 18 N -0.874 5.874 19 Si 0.881 3.119 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.276 1.276 23 C 0.200 3.800 24 H 0.035 0.965 25 C -0.142 4.142 26 C 0.044 3.956 27 C 0.042 3.958 28 N -0.420 5.420 29 C 0.068 3.932 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.151 0.849 34 H 0.077 0.923 35 H 0.032 0.968 36 H 0.022 0.978 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.032 0.968 40 H 0.047 0.953 41 H 0.253 0.747 42 H 0.045 0.955 43 H 0.021 0.979 44 H 0.087 0.913 45 H 0.058 0.942 46 H 0.025 0.975 47 H 0.169 0.831 48 H 0.075 0.925 49 H 0.086 0.914 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.366 -12.598 -14.015 22.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.283 6.283 3 C 0.385 3.615 4 O -0.390 6.390 5 C -0.170 4.170 6 C -0.093 4.093 7 C -0.166 4.166 8 C -0.003 4.003 9 N -0.253 5.253 10 C -0.078 4.078 11 C 0.066 3.934 12 H 0.048 0.952 13 C -0.187 4.187 14 N -0.304 5.304 15 C -0.389 4.389 16 H 0.068 0.932 17 C -0.168 4.168 18 N -0.514 5.514 19 Si 0.710 3.290 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.201 1.201 23 C 0.094 3.906 24 H 0.053 0.947 25 C -0.200 4.200 26 C -0.085 4.085 27 C -0.095 4.095 28 N -0.095 5.095 29 C -0.073 4.073 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.119 0.881 33 H 0.168 0.832 34 H 0.095 0.905 35 H 0.050 0.950 36 H 0.041 0.959 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.051 0.949 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.040 0.960 44 H 0.106 0.894 45 H 0.077 0.923 46 H 0.043 0.957 47 H 0.186 0.814 48 H 0.093 0.907 49 H 0.105 0.895 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.208 -12.404 -13.590 22.081 hybrid contribution 1.349 -0.062 -0.011 1.350 sum -10.860 -12.466 -13.602 21.409 Atomic orbital electron populations 1.23250 0.76071 1.03557 1.02784 1.86585 1.23656 1.32997 1.85106 1.19831 0.87034 0.81563 0.73038 1.90903 1.65484 1.35758 1.46820 1.19239 0.86245 0.88051 1.23497 1.21229 0.91662 0.96703 0.99729 1.19334 0.94672 0.92541 1.10022 1.20392 0.92385 0.96891 0.90658 1.61876 1.41609 1.08726 1.13092 1.22671 0.96546 0.91303 0.97282 1.20524 0.93573 0.88773 0.90541 0.95237 1.21692 0.99159 0.95806 1.02034 1.44034 1.25892 1.09604 1.50879 1.18659 0.97572 1.11231 1.11468 0.93218 1.25528 0.96261 1.00177 0.94816 1.70146 1.28843 1.20725 1.31663 0.86664 0.85679 0.78442 0.78248 1.20974 1.21692 1.20129 1.20270 0.96096 0.87915 0.86352 0.94685 1.21981 0.98024 0.96686 1.03334 1.22849 0.91865 0.92902 1.00885 1.21829 0.86770 0.95064 1.05869 1.43771 1.05621 1.06219 1.53888 1.22248 1.03394 0.78024 1.03668 0.91720 0.91838 0.88138 0.83172 0.90487 0.94994 0.95939 0.92126 0.91676 0.94885 0.93420 0.93663 0.93563 0.96008 0.89410 0.92320 0.95705 0.81396 0.90654 0.89531 0.88473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.57 101.05 1.07 1.34 16 2 O -0.37 -3.77 8.00 -41.03 -0.33 -4.10 16 3 C 0.54 7.22 7.92 34.06 0.27 7.49 16 4 O -0.50 -7.97 16.68 -19.36 -0.32 -8.30 16 5 C -0.06 -0.83 6.88 -81.99 -0.56 -1.40 16 6 C -0.07 -0.96 10.60 -39.09 -0.41 -1.37 16 7 C -0.16 -2.19 4.99 -105.02 -0.52 -2.72 16 8 C 0.12 1.82 5.45 -4.98 -0.03 1.80 16 9 N -0.53 -9.61 4.62 -235.77 -1.09 -10.70 16 10 C 0.05 0.94 4.73 -3.70 -0.02 0.92 16 11 C 0.17 3.78 3.66 -67.49 -0.25 3.53 16 12 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 13 C -0.13 -2.56 8.18 37.16 0.30 -2.25 16 14 N -0.58 -14.34 2.82 -157.01 -0.44 -14.78 16 15 C -0.26 -6.86 6.76 -15.06 -0.10 -6.97 16 16 H 0.05 1.34 7.16 -52.49 -0.38 0.97 16 17 C 0.03 0.92 3.36 -17.43 -0.06 0.86 16 18 N -0.87 -24.85 11.71 55.49 0.65 -24.20 16 19 Si 0.88 20.99 29.59 -169.99 -5.03 15.96 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C 0.20 4.67 3.14 -67.49 -0.21 4.46 16 24 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 25 C -0.14 -3.27 7.95 37.15 0.30 -2.97 16 26 C 0.04 0.86 4.91 -3.70 -0.02 0.84 16 27 C 0.04 0.49 9.72 -17.16 -0.17 0.32 16 28 N -0.42 -4.70 3.15 -120.41 -0.38 -5.07 16 29 C 0.07 0.49 10.56 59.84 0.63 1.12 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.15 2.16 8.06 -52.49 -0.42 1.74 16 34 H 0.08 1.06 7.97 -51.93 -0.41 0.65 16 35 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 1.01 5.93 -51.93 -0.31 0.70 16 38 H 0.06 1.43 7.65 -51.93 -0.40 1.03 16 39 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.94 7.61 -51.93 -0.40 0.54 16 41 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.05 1.07 7.68 -51.93 -0.40 0.67 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.09 2.26 4.94 -51.93 -0.26 2.00 16 45 H 0.06 1.04 7.99 -51.93 -0.41 0.62 16 46 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.17 1.57 8.06 -52.49 -0.42 1.14 16 48 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.10 0.71 6.15 -51.93 -0.32 0.39 16 LS Contribution 392.44 15.07 5.91 5.91 Total: -1.00 -31.92 392.44 -9.14 -41.06 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -8.33 Total: -0.77 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 0.22 Total: 5.00 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -1.26 Total: -54.76 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -0.65 Total: -12.40 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.92 -9.14 -41.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119450295.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.124 kcal (2) G-P(sol) polarization free energy of solvation -31.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds