Wall clock time and date at job start Tue Mar 31 2020 18:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45190 * 1 3 3 C 1.34897 * 117.00184 * 2 1 4 4 O 1.21619 * 119.99377 * 359.97438 * 3 2 1 5 5 C 1.46495 * 120.00226 * 179.97438 * 3 2 1 6 6 C 1.37994 * 126.26018 * 180.02562 * 5 3 2 7 7 C 1.39794 * 106.96726 * 179.97438 * 6 5 3 8 8 C 1.50696 * 126.08264 * 179.97438 * 7 6 5 9 9 N 1.46897 * 109.47462 * 90.02828 * 8 7 6 10 10 C 1.46896 * 111.00177 * 65.69723 * 9 8 7 11 11 C 1.53235 * 109.34271 * 187.25771 * 10 9 8 12 12 H 1.08996 * 109.79009 * 65.97553 * 11 10 9 13 13 C 1.53000 * 109.62816 * 186.46473 * 11 10 9 14 14 N 1.47080 * 108.52167 * 306.17174 * 11 10 9 15 15 C 1.36938 * 120.88452 * 231.20652 * 14 11 10 16 16 H 1.07998 * 119.99655 * 52.72338 * 15 14 11 17 17 C 1.38812 * 119.99937 * 232.72464 * 15 14 11 18 18 N 1.31612 * 120.00379 * 18.80696 * 17 15 14 19 19 Si 1.86798 * 119.99739 * 198.80834 * 17 15 14 20 20 H 1.48501 * 109.47318 * 89.99732 * 19 17 15 21 21 H 1.48496 * 109.47239 * 209.99844 * 19 17 15 22 22 H 1.48501 * 109.47346 * 329.99950 * 19 17 15 23 23 C 1.47080 * 118.23727 * 51.18281 * 14 11 10 24 24 H 1.09004 * 109.62733 * 68.52269 * 23 14 11 25 25 C 1.52995 * 109.63060 * 189.10531 * 23 14 11 26 26 C 1.46897 * 111.00355 * 190.00559 * 9 8 7 27 27 C 1.35489 * 107.84429 * 0.24670 * 7 6 5 28 28 N 1.34966 * 108.98389 * 359.60124 * 27 7 6 29 29 C 1.46493 * 125.63805 * 180.11863 * 28 27 7 30 30 H 1.08993 * 109.47770 * 300.00499 * 1 2 3 31 31 H 1.09000 * 109.47159 * 60.00651 * 1 2 3 32 32 H 1.09002 * 109.47435 * 180.02562 * 1 2 3 33 33 H 1.07997 * 126.51975 * 359.97422 * 6 5 3 34 34 H 1.09006 * 109.46916 * 330.02966 * 8 7 6 35 35 H 1.08995 * 109.47604 * 210.03186 * 8 7 6 36 36 H 1.09003 * 109.49145 * 67.29812 * 10 9 8 37 37 H 1.09006 * 109.49125 * 307.22067 * 10 9 8 38 38 H 1.09000 * 109.46936 * 179.03038 * 13 11 10 39 39 H 1.09005 * 109.46774 * 299.02231 * 13 11 10 40 40 H 1.08997 * 109.47550 * 59.02766 * 13 11 10 41 41 H 0.96994 * 120.00414 * 182.68305 * 18 17 15 42 42 H 1.08996 * 109.47276 * 52.02532 * 25 23 14 43 43 H 1.09004 * 109.47131 * 172.02333 * 25 23 14 44 44 H 1.08996 * 109.47078 * 292.02186 * 25 23 14 45 45 H 1.09000 * 109.49478 * 52.78560 * 26 9 8 46 46 H 1.08995 * 109.48935 * 292.70676 * 26 9 8 47 47 H 1.08000 * 125.51490 * 179.75421 * 27 7 6 48 48 H 1.08995 * 109.47260 * 270.32671 * 29 28 27 49 49 H 1.09001 * 109.47004 * 30.32691 * 29 28 27 50 50 H 1.09001 * 109.47339 * 150.32195 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4019 2.2219 -0.0005 5 6 3.5273 1.2786 0.0006 6 6 4.2841 2.4325 0.0011 7 6 5.6259 2.0403 0.0021 8 6 6.8195 2.9603 0.0025 9 7 7.2069 3.2593 1.3875 10 6 7.6873 2.0518 2.0723 11 6 7.9082 2.3636 3.5562 12 1 6.9533 2.5847 4.0329 13 6 8.5593 1.1613 4.2427 14 7 8.7950 3.5324 3.6610 15 6 9.9113 3.4988 4.4534 16 1 10.6299 2.7006 4.3402 17 6 10.1192 4.4907 5.4019 18 7 9.1128 5.2370 5.8052 19 14 11.8272 4.7664 6.1061 20 1 12.5524 5.7583 5.2721 21 1 11.7133 5.2771 7.4958 22 1 12.5741 3.4828 6.1102 23 6 8.4512 4.7379 2.8918 24 1 7.5472 5.1884 3.3016 25 6 9.6061 5.7389 2.9617 26 6 8.2089 4.3325 1.4340 27 6 5.6626 0.6859 -0.0034 28 7 4.3987 0.2125 0.0011 29 6 4.0171 -1.2019 -0.0001 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.9108 3.4459 0.0008 34 1 6.5640 3.8870 -0.5115 35 1 7.6507 2.4773 -0.5111 36 1 8.6273 1.7294 1.6245 37 1 6.9461 1.2586 1.9736 38 1 8.7309 1.3922 5.2940 39 1 7.9000 0.2968 4.1636 40 1 9.5106 0.9382 3.7596 41 1 9.2652 5.9555 6.4388 42 1 10.5341 5.2436 2.6761 43 1 9.4113 6.5667 2.2797 44 1 9.6957 6.1197 3.9790 45 1 7.8461 5.1935 0.8725 46 1 9.1416 3.9784 0.9950 47 1 6.5584 0.0826 -0.0079 48 1 3.9237 -1.5521 -1.0280 49 1 4.7810 -1.7848 0.5143 50 1 3.0626 -1.3211 0.5125 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119450295.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:33 Heat of formation + Delta-G solvation = -15.107340 kcal Electronic energy + Delta-G solvation = -30095.354810 eV Core-core repulsion = 26124.079067 eV Total energy + Delta-G solvation = -3971.275743 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.55588 -40.97014 -39.87209 -37.54892 -36.69138 -34.46820 -34.07460 -32.96913 -31.11026 -29.64154 -28.74943 -28.22050 -27.34696 -26.80949 -25.62737 -24.16954 -22.92033 -21.93467 -21.01788 -20.75240 -20.70045 -18.41472 -18.06493 -18.01251 -17.55201 -16.98287 -16.63050 -16.37970 -16.05166 -15.98553 -15.83419 -15.21907 -14.97824 -14.88659 -14.63425 -14.31864 -14.28013 -13.78418 -13.63808 -13.37052 -13.29393 -13.23301 -13.09847 -13.02742 -12.82569 -12.68732 -12.54660 -12.47111 -12.29270 -12.22933 -11.95072 -11.93344 -11.86838 -11.82133 -11.48437 -11.41951 -11.11469 -10.09718 -9.62165 -9.29836 -8.98172 -8.30768 -7.63542 -5.52861 0.17297 1.45859 1.49074 1.55619 1.55649 1.59932 1.92330 2.07091 2.52311 3.29530 3.32263 3.66132 3.71148 3.95375 4.04406 4.23004 4.29046 4.32097 4.34265 4.39416 4.47384 4.49329 4.55567 4.62879 4.65644 4.70376 4.72664 4.79472 4.82877 4.89713 4.92154 4.96525 4.98232 5.01854 5.05197 5.07487 5.18657 5.29746 5.34847 5.53320 5.58611 5.70790 5.74751 5.81605 5.89539 5.93736 6.25346 6.38808 6.45540 6.62327 6.65068 7.30806 7.88857 8.63262 9.20676 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021203 B = 0.002646 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.224996 B =10579.304409 C =10762.729596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.540 3.460 4 O -0.538 6.538 5 C -0.078 4.078 6 C -0.090 4.090 7 C -0.180 4.180 8 C 0.132 3.868 9 N -0.548 5.548 10 C 0.069 3.931 11 C 0.162 3.838 12 H -0.006 1.006 13 C -0.117 4.117 14 N -0.594 5.594 15 C -0.258 4.258 16 H 0.048 0.952 17 C -0.007 4.007 18 N -0.910 5.910 19 Si 0.937 3.063 20 H -0.279 1.279 21 H -0.297 1.297 22 H -0.267 1.267 23 C 0.197 3.803 24 H -0.007 1.007 25 C -0.134 4.134 26 C 0.059 3.941 27 C 0.058 3.942 28 N -0.411 5.411 29 C 0.060 3.940 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.028 0.972 37 H 0.083 0.917 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.249 0.751 42 H 0.042 0.958 43 H 0.048 0.952 44 H 0.058 0.942 45 H 0.075 0.925 46 H 0.028 0.972 47 H 0.201 0.799 48 H 0.094 0.906 49 H 0.112 0.888 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.808 -15.472 -15.887 24.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.388 3.612 4 O -0.429 6.429 5 C -0.188 4.188 6 C -0.117 4.117 7 C -0.186 4.186 8 C 0.004 3.996 9 N -0.272 5.272 10 C -0.060 4.060 11 C 0.056 3.944 12 H 0.012 0.988 13 C -0.175 4.175 14 N -0.320 5.320 15 C -0.388 4.388 16 H 0.065 0.935 17 C -0.206 4.206 18 N -0.552 5.552 19 Si 0.765 3.235 20 H -0.205 1.205 21 H -0.224 1.224 22 H -0.192 1.192 23 C 0.091 3.909 24 H 0.011 0.989 25 C -0.192 4.192 26 C -0.070 4.070 27 C -0.081 4.081 28 N -0.085 5.085 29 C -0.080 4.080 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.157 0.843 33 H 0.154 0.846 34 H 0.098 0.902 35 H 0.068 0.932 36 H 0.046 0.954 37 H 0.101 0.899 38 H 0.053 0.947 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.046 0.954 47 H 0.218 0.782 48 H 0.113 0.887 49 H 0.130 0.870 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.662 -15.334 -15.488 24.719 hybrid contribution 1.046 0.746 0.565 1.404 sum -10.616 -14.588 -14.923 23.414 Atomic orbital electron populations 1.23584 0.74272 1.05990 1.02511 1.86580 1.25335 1.31125 1.84363 1.19917 0.87158 0.81874 0.72246 1.90880 1.66248 1.37082 1.48709 1.19249 0.86633 0.88704 1.24168 1.21275 0.92692 0.96754 1.01003 1.19294 0.93808 0.93600 1.11941 1.20353 0.93185 0.97688 0.88340 1.61806 1.41074 1.08512 1.15793 1.22405 0.97444 0.91882 0.94295 1.20706 0.91624 0.88663 0.93406 0.98843 1.21564 0.99992 0.96204 0.99749 1.44323 1.25912 1.10664 1.51057 1.18812 0.97982 1.10865 1.11182 0.93503 1.26095 0.98972 1.00221 0.95295 1.70269 1.30689 1.21487 1.32774 0.85771 0.82141 0.78524 0.77093 1.20550 1.22395 1.19191 1.20210 0.94349 0.87643 0.88716 0.98911 1.21841 0.97740 0.97419 1.02199 1.22536 0.92593 0.94195 0.97689 1.22240 0.87764 0.94537 1.03607 1.44036 1.05085 1.07268 1.52068 1.22579 1.04220 0.75833 1.05335 0.92340 0.91884 0.84293 0.84633 0.90157 0.93210 0.95387 0.89882 0.94673 0.91241 0.93054 0.94180 0.93925 0.93338 0.92304 0.90617 0.95398 0.78224 0.88725 0.86988 0.88642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.57 113.37 1.20 1.58 16 2 O -0.36 -6.81 8.00 -58.11 -0.46 -7.27 16 3 C 0.54 14.28 7.92 69.97 0.55 14.83 16 4 O -0.54 -17.54 16.68 19.45 0.32 -17.21 16 5 C -0.08 -2.04 6.88 40.32 0.28 -1.76 16 6 C -0.09 -2.59 10.60 22.59 0.24 -2.35 16 7 C -0.18 -4.62 4.99 -20.13 -0.10 -4.72 16 8 C 0.13 3.55 5.45 85.56 0.47 4.02 16 9 N -0.55 -19.17 4.62 -899.85 -4.16 -23.33 16 10 C 0.07 2.38 4.73 86.38 0.41 2.79 16 11 C 0.16 7.09 3.66 44.96 0.16 7.25 16 12 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 13 C -0.12 -4.52 8.18 71.98 0.59 -3.93 16 14 N -0.59 -29.79 2.82 -650.66 -1.83 -31.62 16 15 C -0.26 -13.78 6.76 84.03 0.57 -13.21 16 16 H 0.05 2.52 7.16 -2.91 -0.02 2.50 16 17 C -0.01 -0.38 3.36 84.86 0.29 -0.10 16 18 N -0.91 -53.60 11.71 21.65 0.25 -53.35 16 19 Si 0.94 43.66 29.59 68.60 2.03 45.69 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 21 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 23 C 0.20 9.36 3.14 44.96 0.14 9.50 16 24 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 25 C -0.13 -6.20 7.95 71.98 0.57 -5.62 16 26 C 0.06 2.24 4.91 86.38 0.42 2.66 16 27 C 0.06 1.14 9.72 83.58 0.81 1.95 16 28 N -0.41 -8.00 3.15 -534.86 -1.68 -9.68 16 29 C 0.06 0.63 10.56 127.77 1.35 1.98 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 34 H 0.08 2.10 7.97 -2.38 -0.02 2.08 16 35 H 0.05 1.19 8.12 -2.39 -0.02 1.17 16 36 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.08 2.49 5.93 -2.38 -0.01 2.47 16 38 H 0.03 1.53 7.65 -2.39 -0.02 1.51 16 39 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 40 H 0.05 1.92 7.61 -2.39 -0.02 1.90 16 41 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 42 H 0.04 1.95 7.68 -2.39 -0.02 1.93 16 43 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 44 H 0.06 3.09 4.94 -2.39 -0.01 3.08 16 45 H 0.08 2.58 7.99 -2.39 -0.02 2.56 16 46 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.20 2.64 8.06 -2.91 -0.02 2.61 16 48 H 0.09 0.69 8.14 -2.39 -0.02 0.68 16 49 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.10 1.09 6.15 -2.39 -0.01 1.07 16 Total: -1.00 -72.54 392.44 3.34 -69.20 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.92 Total: 12.72 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: 7.95 Total: 14.86 kcal Atomic # 7 Polarization: -110.56 SS G_CDS: -7.42 Total: -117.98 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.14 Total: -24.49 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -72.54 3.34 -69.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119450295.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.094 kcal (2) G-P(sol) polarization free energy of solvation -72.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds