Wall clock time and date at job start Tue Mar 31 2020 18:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34889 * 117.00023 * 2 1 4 4 O 1.21624 * 119.99989 * 0.02562 * 3 2 1 5 5 C 1.46492 * 119.99943 * 179.97438 * 3 2 1 6 6 C 1.37999 * 126.26188 * 179.97438 * 5 3 2 7 7 C 1.39797 * 106.96788 * 180.02562 * 6 5 3 8 8 C 1.50700 * 126.07898 * 180.02562 * 7 6 5 9 9 N 1.46896 * 109.47140 * 90.02308 * 8 7 6 10 10 C 1.46902 * 110.99821 * 294.29956 * 9 8 7 11 11 C 1.53241 * 109.33876 * 172.75171 * 10 9 8 12 12 H 1.09000 * 109.63027 * 173.54599 * 11 10 9 13 13 C 1.53004 * 109.78715 * 294.02322 * 11 10 9 14 14 N 1.47073 * 108.52359 * 53.83075 * 11 10 9 15 15 C 1.36929 * 120.88487 * 128.83898 * 14 11 10 16 16 H 1.08004 * 120.00336 * 307.71779 * 15 14 11 17 17 C 1.38820 * 120.00201 * 127.71198 * 15 14 11 18 18 N 1.31624 * 119.99874 * 156.43290 * 17 15 14 19 19 Si 1.86795 * 119.99979 * 336.43298 * 17 15 14 20 20 H 1.48497 * 109.47119 * 95.27185 * 19 17 15 21 21 H 1.48503 * 109.46974 * 215.26839 * 19 17 15 22 22 H 1.48500 * 109.47170 * 335.27026 * 19 17 15 23 23 C 1.47089 * 118.23691 * 308.81337 * 14 11 10 24 24 H 1.09004 * 109.62923 * 291.47562 * 23 14 11 25 25 C 1.52997 * 109.78857 * 170.99031 * 23 14 11 26 26 C 1.46906 * 110.99791 * 170.00214 * 9 8 7 27 27 C 1.35488 * 107.84085 * 0.26232 * 7 6 5 28 28 N 1.34962 * 108.98891 * 359.56613 * 27 7 6 29 29 C 1.46492 * 125.63736 * 180.19199 * 28 27 7 30 30 H 1.08995 * 109.47399 * 299.99625 * 1 2 3 31 31 H 1.09003 * 109.47253 * 59.99482 * 1 2 3 32 32 H 1.09000 * 109.47569 * 179.97438 * 1 2 3 33 33 H 1.08003 * 126.51666 * 0.03241 * 6 5 3 34 34 H 1.09004 * 109.46767 * 210.02334 * 8 7 6 35 35 H 1.09001 * 109.46747 * 330.01891 * 8 7 6 36 36 H 1.09004 * 109.49495 * 292.70880 * 10 9 8 37 37 H 1.08996 * 109.49450 * 52.79341 * 10 9 8 38 38 H 1.09003 * 109.47338 * 179.12665 * 13 11 10 39 39 H 1.09000 * 109.47263 * 299.12928 * 13 11 10 40 40 H 1.08999 * 109.47137 * 59.12981 * 13 11 10 41 41 H 0.96995 * 119.99998 * 180.02562 * 18 17 15 42 42 H 1.09007 * 109.47153 * 307.57235 * 25 23 14 43 43 H 1.08997 * 109.47267 * 67.57064 * 25 23 14 44 44 H 1.08999 * 109.47118 * 187.56836 * 25 23 14 45 45 H 1.08998 * 109.49037 * 307.21044 * 26 9 8 46 46 H 1.09000 * 109.49335 * 67.26849 * 26 9 8 47 47 H 1.08005 * 125.50444 * 179.72791 * 27 7 6 48 48 H 1.09001 * 109.47360 * 270.28672 * 29 28 27 49 49 H 1.08997 * 109.47288 * 30.28683 * 29 28 27 50 50 H 1.09000 * 109.47067 * 150.28675 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4020 2.2219 0.0005 5 6 3.5273 1.2785 0.0006 6 6 4.2842 2.4324 0.0001 7 6 5.6260 2.0402 0.0004 8 6 6.8196 2.9602 0.0006 9 7 7.2075 3.2587 1.3856 10 6 6.1620 4.0307 2.0704 11 6 6.5200 4.1650 3.5543 12 1 5.8097 4.8315 4.0435 13 6 6.4789 2.7898 4.2236 14 7 7.8759 4.7251 3.6589 15 6 8.1279 5.8127 4.4519 16 1 7.5342 6.7085 4.3446 17 6 9.1464 5.7638 5.3938 18 7 9.7030 6.8780 5.8196 19 14 9.7271 4.1169 6.0570 20 1 10.9098 3.6610 5.2834 21 1 10.0975 4.2623 7.4878 22 1 8.6356 3.1184 5.9272 23 6 8.9543 4.0858 2.8896 24 1 9.1599 3.0969 3.2995 25 6 10.2190 4.9439 2.9589 26 6 8.5004 3.9546 1.4318 27 6 5.6626 0.6858 -0.0050 28 7 4.3987 0.2123 0.0011 29 6 4.0171 -1.2020 0.0021 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.9109 3.4459 -0.0002 34 1 7.6506 2.4773 -0.5135 35 1 6.5639 3.8870 -0.5130 36 1 6.0894 5.0219 1.6226 37 1 5.2063 3.5159 1.9720 38 1 6.7494 2.8890 5.2749 39 1 5.4732 2.3771 4.1446 40 1 7.1850 2.1233 3.7282 41 1 10.4149 6.8439 6.4775 42 1 9.9806 5.9667 2.6668 43 1 10.6068 4.9380 3.9775 44 1 10.9707 4.5385 2.2816 45 1 9.2405 3.3846 0.8703 46 1 8.3954 4.9467 0.9926 47 1 6.5584 0.0825 -0.0104 48 1 3.9222 -1.5535 -1.0253 49 1 4.7817 -1.7843 0.5161 50 1 3.0633 -1.3206 0.5162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119450296.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:37 Heat of formation + Delta-G solvation = 8.303737 kcal Electronic energy + Delta-G solvation = -30416.368566 eV Core-core repulsion = 26446.108004 eV Total energy + Delta-G solvation = -3970.260562 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.67984 -40.07125 -38.56323 -36.65445 -35.22607 -33.06089 -32.52899 -31.50872 -30.24855 -28.55629 -27.80365 -27.34565 -26.02630 -25.45303 -23.82038 -23.08930 -21.81710 -21.01222 -20.11048 -19.79261 -18.35576 -17.50019 -17.17969 -16.74071 -16.61800 -15.81107 -15.53002 -15.22039 -14.66379 -14.56229 -14.27008 -14.13451 -13.90066 -13.55148 -13.52630 -13.20639 -12.97112 -12.71056 -12.60001 -12.37394 -12.35296 -12.24044 -12.03562 -11.94752 -11.50492 -11.27075 -11.14454 -11.10987 -10.93053 -10.85491 -10.62105 -10.37696 -10.34463 -9.95732 -9.71325 -9.46450 -9.39508 -8.74930 -8.33847 -8.28711 -7.74752 -6.38258 -5.97285 -3.49477 1.09358 2.37240 2.51355 2.65845 3.01582 3.39955 3.52824 3.63894 4.45334 4.56368 4.58438 4.60655 4.77104 4.86828 4.89272 4.92514 5.06432 5.16188 5.16242 5.26427 5.31409 5.33805 5.57175 5.74186 5.79980 5.88160 5.90467 6.03371 6.07114 6.17837 6.19351 6.24416 6.27722 6.42127 6.50603 6.55063 6.61459 6.64645 6.69457 6.83267 6.86316 7.01988 7.03720 7.12885 7.25995 7.45169 7.55331 7.64157 7.72664 8.17483 8.59859 9.13434 9.76653 10.35520 11.16582 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020004 B = 0.002941 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.349825 B = 9517.062586 C = 9803.351648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.366 6.366 3 C 0.538 3.462 4 O -0.501 6.501 5 C -0.059 4.059 6 C -0.080 4.080 7 C -0.162 4.162 8 C 0.125 3.875 9 N -0.528 5.528 10 C 0.050 3.950 11 C 0.168 3.832 12 H 0.068 0.932 13 C -0.152 4.152 14 N -0.595 5.595 15 C -0.272 4.272 16 H 0.067 0.933 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.865 3.135 20 H -0.282 1.282 21 H -0.304 1.304 22 H -0.258 1.258 23 C 0.172 3.828 24 H 0.029 0.971 25 C -0.144 4.144 26 C 0.049 3.951 27 C 0.056 3.944 28 N -0.421 5.421 29 C 0.068 3.932 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.148 0.852 34 H 0.075 0.925 35 H 0.037 0.963 36 H 0.027 0.973 37 H 0.069 0.931 38 H 0.047 0.953 39 H 0.033 0.967 40 H 0.054 0.946 41 H 0.262 0.738 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.032 0.968 45 H 0.061 0.939 46 H 0.033 0.967 47 H 0.172 0.828 48 H 0.075 0.925 49 H 0.086 0.914 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.772 -17.867 -14.741 25.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.283 6.283 3 C 0.384 3.616 4 O -0.389 6.389 5 C -0.168 4.168 6 C -0.107 4.107 7 C -0.168 4.168 8 C -0.003 4.003 9 N -0.252 5.252 10 C -0.079 4.079 11 C 0.061 3.939 12 H 0.086 0.914 13 C -0.211 4.211 14 N -0.319 5.319 15 C -0.401 4.401 16 H 0.085 0.915 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.693 3.307 20 H -0.209 1.209 21 H -0.232 1.232 22 H -0.182 1.182 23 C 0.066 3.934 24 H 0.047 0.953 25 C -0.202 4.202 26 C -0.080 4.080 27 C -0.081 4.081 28 N -0.096 5.096 29 C -0.073 4.073 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.119 0.881 33 H 0.166 0.834 34 H 0.093 0.907 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.051 0.949 45 H 0.079 0.921 46 H 0.051 0.949 47 H 0.189 0.811 48 H 0.094 0.906 49 H 0.105 0.895 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.000 -18.265 -14.367 26.154 hybrid contribution 0.116 -0.198 0.113 0.256 sum -11.884 -18.464 -14.254 26.179 Atomic orbital electron populations 1.23259 0.76004 1.03590 1.02816 1.86584 1.23705 1.32955 1.85075 1.19841 0.87054 0.81595 0.73083 1.90911 1.65497 1.35750 1.46758 1.19208 0.86254 0.88026 1.23285 1.21280 0.91939 0.96677 1.00800 1.19301 0.94115 0.92988 1.10373 1.20373 0.93594 0.95884 0.90483 1.61936 1.03203 1.46823 1.13264 1.22600 0.94037 0.94733 0.96531 1.20751 0.88527 0.93234 0.91357 0.91411 1.22170 0.99402 0.99014 1.00533 1.44425 1.02816 1.33805 1.50903 1.18495 1.18161 0.91008 1.12445 0.91525 1.25853 0.97193 0.95840 0.95609 1.69925 1.24511 1.27013 1.31882 0.87267 0.79044 0.87123 0.77267 1.20934 1.23204 1.18235 1.20642 0.89278 0.94870 0.88602 0.95300 1.22026 0.95422 1.00784 1.01926 1.22664 0.90017 0.95894 0.99451 1.21784 0.86646 0.94946 1.04752 1.43802 1.05730 1.06213 1.53838 1.22245 1.03372 0.78001 1.03688 0.91693 0.91812 0.88112 0.83422 0.90666 0.94499 0.95424 0.91297 0.93382 0.94770 0.92698 0.92801 0.91379 0.91435 0.94886 0.92097 0.94898 0.81107 0.90633 0.89512 0.88519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.57 101.05 1.07 1.32 16 2 O -0.37 -3.60 8.00 -41.01 -0.33 -3.93 16 3 C 0.54 6.90 7.92 34.06 0.27 7.17 16 4 O -0.50 -7.72 16.68 -19.36 -0.32 -8.04 16 5 C -0.06 -0.75 6.89 -81.99 -0.56 -1.32 16 6 C -0.08 -1.08 9.08 -39.09 -0.35 -1.43 16 7 C -0.16 -2.04 4.96 -105.02 -0.52 -2.56 16 8 C 0.12 1.66 5.45 -4.98 -0.03 1.64 16 9 N -0.53 -8.71 4.12 -235.76 -0.97 -9.69 16 10 C 0.05 0.90 4.84 -3.70 -0.02 0.88 16 11 C 0.17 3.51 3.30 -67.49 -0.22 3.29 16 12 H 0.07 1.47 7.95 -51.93 -0.41 1.06 16 13 C -0.15 -3.03 9.10 37.16 0.34 -2.69 16 14 N -0.59 -14.10 1.97 -157.00 -0.31 -14.41 16 15 C -0.27 -7.52 8.73 -15.06 -0.13 -7.65 16 16 H 0.07 2.03 8.06 -52.48 -0.42 1.61 16 17 C 0.06 1.61 3.87 -17.43 -0.07 1.55 16 18 N -0.89 -26.69 13.97 55.49 0.78 -25.91 16 19 Si 0.86 22.04 24.77 -169.99 -4.21 17.83 16 20 H -0.28 -7.00 6.45 56.52 0.36 -6.64 16 21 H -0.30 -7.94 7.11 56.52 0.40 -7.53 16 22 H -0.26 -6.50 5.55 56.52 0.31 -6.18 16 23 C 0.17 3.70 2.06 -67.49 -0.14 3.56 16 24 H 0.03 0.66 6.94 -51.93 -0.36 0.30 16 25 C -0.14 -3.18 7.83 37.16 0.29 -2.89 16 26 C 0.05 0.87 4.91 -3.70 -0.02 0.85 16 27 C 0.06 0.60 11.26 -17.16 -0.19 0.40 16 28 N -0.42 -4.36 3.15 -120.41 -0.38 -4.74 16 29 C 0.07 0.45 10.56 59.84 0.63 1.08 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.15 2.02 8.06 -52.48 -0.42 1.59 16 34 H 0.07 0.88 7.97 -51.93 -0.41 0.46 16 35 H 0.04 0.50 8.12 -51.93 -0.42 0.08 16 36 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 1.17 5.91 -51.93 -0.31 0.86 16 38 H 0.05 1.04 6.73 -51.93 -0.35 0.69 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 1.10 7.10 -51.93 -0.37 0.74 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.07 1.61 7.71 -51.93 -0.40 1.21 16 43 H 0.07 1.66 3.33 -51.93 -0.17 1.49 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.95 7.99 -51.93 -0.41 0.53 16 46 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.17 1.39 8.06 -52.48 -0.42 0.97 16 48 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.10 0.65 6.15 -51.93 -0.32 0.33 16 LS Contribution 384.73 15.07 5.80 5.80 Total: -1.00 -32.69 384.73 -7.88 -40.57 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -8.27 Total: -0.67 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 0.34 Total: 3.20 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.88 Total: -54.76 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -0.65 Total: -11.97 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.21 Total: 17.83 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.69 -7.88 -40.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119450296.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.874 kcal (2) G-P(sol) polarization free energy of solvation -32.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds